FFCP PHASE1:Hg19::chr6:21666683..21666690,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=401237 | |EntrezGene=401237 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=28245 | |HGNC=28245 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=8bp_to_NR_015410,uc003ndj.2,uc011djj.1_5end | |association_with_transcript=8bp_to_NR_015410,uc003ndj.2,uc011djj.1_5end | ||
|cluster_id=chr6:21666683..21666690,+ | |||
|coexpression_cluster_id=C724 | |coexpression_cluster_id=C724 | ||
|description=CAGE_peak_9_at_LINC00340_5end | |description=CAGE_peak_9_at_LINC00340_5end | ||
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|ontology_enrichment_celltype=CL:0000047!3.31e-11!8;CL:0000540!6.37e-11!6;CL:0000031!6.37e-11!6;CL:0000404!6.37e-11!6;CL:0002319!1.79e-10!25;CL:0002322!3.17e-08!5;CL:0000064!8.06e-08!3;CL:0005012!8.06e-08!3;CL:0000067!8.06e-08!3;CL:0002304!8.06e-08!3;CL:0002605!1.15e-07!3;CL:0000133!2.78e-07!59 | |ontology_enrichment_celltype=CL:0000047!3.31e-11!8;CL:0000540!6.37e-11!6;CL:0000031!6.37e-11!6;CL:0000404!6.37e-11!6;CL:0002319!1.79e-10!25;CL:0002322!3.17e-08!5;CL:0000064!8.06e-08!3;CL:0005012!8.06e-08!3;CL:0000067!8.06e-08!3;CL:0002304!8.06e-08!3;CL:0002605!1.15e-07!3;CL:0000133!2.78e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:1001319;2.66e-18;1!CL:1000600;2.66e-18;1!CL:0002138;6.70e-12;6!CL:0002139;8.34e-07;24 | |ontology_enrichment_celltype_v019=CL:1001319;2.66e-18;1!CL:1000600;2.66e-18;1!CL:0002138;6.70e-12;6!CL:0002139;8.34e-07;24 | ||
|ontology_enrichment_celltype_v019_2=CL:1001319,2.66e-18,1;CL:1000600,2.66e-18,1;CL:0005020,7.08e-12,6;CL:0002138,7.08e-12,6;CL:0005022,7.08e-12,6;CL:0002139,8.59e-07,24 | |||
|ontology_enrichment_development_v019=CL:0005022;6.70e-12;6 | |ontology_enrichment_development_v019=CL:0005022;6.70e-12;6 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000488!1.00e-09!4;UBERON:0001778!8.06e-08!3;UBERON:0001775!8.06e-08!3;UBERON:0005743!9.38e-08!86;UBERON:0000956!1.58e-07!25;UBERON:0000203!1.58e-07!25;UBERON:0001017!1.77e-07!82;UBERON:0003056!4.54e-07!61;UBERON:0003075!7.89e-07!86;UBERON:0007284!7.89e-07!86;UBERON:0004121!8.93e-07!169 | |ontology_enrichment_uberon=UBERON:0000488!1.00e-09!4;UBERON:0001778!8.06e-08!3;UBERON:0001775!8.06e-08!3;UBERON:0005743!9.38e-08!86;UBERON:0000956!1.58e-07!25;UBERON:0000203!1.58e-07!25;UBERON:0001017!1.77e-07!82;UBERON:0003056!4.54e-07!61;UBERON:0003075!7.89e-07!86;UBERON:0007284!7.89e-07!86;UBERON:0004121!8.93e-07!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0004645;2.66e-18;1!UBERON:0001256;2.66e-18;1!UBERON:0001259;2.66e-18;1!UBERON:0001950;5.78e-13;20!UBERON:0000922;8.81e-13;49!UBERON:0002619;7.25e-12;22!UBERON:0000956;1.56e-10;25!UBERON:0000203;1.56e-10;25!UBERON:0001871;2.46e-10;6!UBERON:0001255;7.98e-10;2!UBERON:0001556;7.98e-10;2!UBERON:0001473;3.70e-09;8!UBERON:0004536;3.70e-09;8!UBERON:0006558;3.70e-09;8!UBERON:0002791;3.47e-08;32!UBERON:0001869;4.45e-08;32!UBERON:0002465;1.67e-07;10!UBERON:0003528;1.81e-07;34!UBERON:0002020;1.81e-07;34!UBERON:0002114;7.08e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0004645;2.66e-18;1!UBERON:0001256;2.66e-18;1!UBERON:0001259;2.66e-18;1!UBERON:0001950;5.78e-13;20!UBERON:0000922;8.81e-13;49!UBERON:0002619;7.25e-12;22!UBERON:0000956;1.56e-10;25!UBERON:0000203;1.56e-10;25!UBERON:0001871;2.46e-10;6!UBERON:0001255;7.98e-10;2!UBERON:0001556;7.98e-10;2!UBERON:0001473;3.70e-09;8!UBERON:0004536;3.70e-09;8!UBERON:0006558;3.70e-09;8!UBERON:0002791;3.47e-08;32!UBERON:0001869;4.45e-08;32!UBERON:0002465;1.67e-07;10!UBERON:0003528;1.81e-07;34!UBERON:0002020;1.81e-07;34!UBERON:0002114;7.08e-07;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004645,2.66e-18,1;UBERON:0001256,2.66e-18,1;UBERON:0001259,2.66e-18,1;UBERON:0001950,5.78e-13,20;UBERON:0002619,7.25e-12,22;UBERON:0000956,1.56e-10,25;UBERON:0000203,1.56e-10,25;UBERON:0001871,2.58e-10,6;UBERON:0001255,7.98e-10,2;UBERON:0001556,7.98e-10,2;UBERON:0001473,3.86e-09,8;UBERON:0004536,3.86e-09,8;UBERON:0006558,3.86e-09,8;UBERON:0002791,2.34e-08,32;UBERON:0001869,2.34e-08,32;UBERON:0003528,6.80e-08,34;UBERON:0002020,6.80e-08,34;UBERON:0001893,6.80e-08,34;UBERON:0002465,1.73e-07,10;UBERON:0002114,7.28e-07,2 | |||
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| ||
|short_description=p9@LINC00340 | |short_description=p9@LINC00340 | ||
}} | }} |
Latest revision as of 04:07, 17 September 2015
Short description: | p9@LINC00340 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_LINC00340_5end |
Coexpression cluster: | C724_transitionalcell_parietal_occipital_duodenum_temporal_non_CD34 |
Association with transcript: | 8bp_to_NR_015410, uc003ndj.2, uc011djj.1_5end |
EntrezGene: | LINC00340 |
HGNC: | 28245 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bladder cell | 2.66e-18 | 1 |
lower urinary tract cell | 2.66e-18 | 1 |
lymphangioblast | 7.08e-12 | 6 |
endothelial cell of lymphatic vessel | 7.08e-12 | 6 |
vascular lymphangioblast | 7.08e-12 | 6 |
endothelial cell of vascular tree | 8.59e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
urinary bladder urothelium | 2.66e-18 | 1 |
wall of urinary bladder | 2.66e-18 | 1 |
mucosa of urinary bladder | 2.66e-18 | 1 |
neocortex | 5.78e-13 | 20 |
regional part of cerebral cortex | 7.25e-12 | 22 |
cerebral cortex | 1.56e-10 | 25 |
pallium | 1.56e-10 | 25 |
temporal lobe | 2.58e-10 | 6 |
urinary bladder | 7.98e-10 | 2 |
lower urinary tract | 7.98e-10 | 2 |
lymphatic vessel | 3.86e-09 | 8 |
lymph vasculature | 3.86e-09 | 8 |
lymphatic part of lymphoid system | 3.86e-09 | 8 |
regional part of telencephalon | 2.34e-08 | 32 |
cerebral hemisphere | 2.34e-08 | 32 |
brain grey matter | 6.80e-08 | 34 |
gray matter | 6.80e-08 | 34 |
telencephalon | 6.80e-08 | 34 |
lymphoid system | 1.73e-07 | 10 |
duodenum | 7.28e-07 | 2 |