FFCP PHASE1:Hg19::chrX:71497077..71497133,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6191 | |EntrezGene=6191 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10424 | |HGNC=10424 | ||
|TSSclassifier=strong | |||
|UniProt=A6NH36 | |UniProt=A6NH36 | ||
|association_with_transcript=0bp_to_ENST00000373626_5end | |association_with_transcript=0bp_to_ENST00000373626_5end | ||
|cluster_id=chrX:71497077..71497133,- | |||
|coexpression_cluster_id=C1162 | |coexpression_cluster_id=C1162 | ||
|description=CAGE_peak_1_at_RPS4X_5end | |description=CAGE_peak_1_at_RPS4X_5end | ||
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|ontology_enrichment_celltype=CL:0000012!4.20e-38!682;CL:0000548!1.16e-37!679;CL:0000004!1.16e-37!679;CL:0000255!1.16e-37!679;CL:0002321!1.61e-23!248;CL:0000220!9.96e-23!246;CL:0000003!1.39e-21!722;CL:0000066!3.70e-21!254;CL:0000144!1.52e-20!625;CL:0000055!9.16e-14!180;CL:0002371!4.01e-13!591;CL:0000063!2.26e-12!578;CL:0000393!3.70e-11!60;CL:0000211!3.70e-11!60;CL:0000222!3.48e-10!119;CL:0000680!3.52e-10!57;CL:0000056!3.52e-10!57;CL:0000355!3.52e-10!57;CL:0000187!8.13e-10!54;CL:0000076!3.82e-09!62;CL:0000183!1.61e-08!59;CL:0000192!3.49e-07!42;CL:0000514!3.49e-07!42 | |ontology_enrichment_celltype=CL:0000012!4.20e-38!682;CL:0000548!1.16e-37!679;CL:0000004!1.16e-37!679;CL:0000255!1.16e-37!679;CL:0002321!1.61e-23!248;CL:0000220!9.96e-23!246;CL:0000003!1.39e-21!722;CL:0000066!3.70e-21!254;CL:0000144!1.52e-20!625;CL:0000055!9.16e-14!180;CL:0002371!4.01e-13!591;CL:0000063!2.26e-12!578;CL:0000393!3.70e-11!60;CL:0000211!3.70e-11!60;CL:0000222!3.48e-10!119;CL:0000680!3.52e-10!57;CL:0000056!3.52e-10!57;CL:0000355!3.52e-10!57;CL:0000187!8.13e-10!54;CL:0000076!3.82e-09!62;CL:0000183!1.61e-08!59;CL:0000192!3.49e-07!42;CL:0000514!3.49e-07!42 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.16e-23,250;CL:0000066,3.96e-21,253;CL:0000393,4.14e-11,61;CL:0000211,4.14e-11,61;CL:0000222,2.86e-10,121;CL:0000680,3.90e-10,58;CL:0000056,3.90e-10,58;CL:0000355,3.90e-10,58;CL:0000187,9.05e-10,55;CL:0000076,2.52e-09,63;CL:0000192,3.81e-07,43;CL:0000514,3.81e-07,43 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:14566!2.40e-26!239;DOID:162!2.91e-25!235;DOID:0050687!1.21e-12!143;DOID:305!3.56e-12!106;DOID:0050686!3.05e-11!137 | |ontology_enrichment_disease=DOID:14566!2.40e-26!239;DOID:162!2.91e-25!235;DOID:0050687!1.21e-12!143;DOID:305!3.56e-12!106;DOID:0050686!3.05e-11!137 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:14566,2.40e-26,239;DOID:162,2.91e-25,235;DOID:0050687,1.21e-12,143;DOID:305,3.56e-12,106;DOID:0050686,3.05e-11,137 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.75e-11!83;UBERON:0002329!1.75e-11!83;UBERON:0003077!1.75e-11!83;UBERON:0003059!1.75e-11!83;UBERON:0007282!1.75e-11!83;UBERON:0009618!1.75e-11!83;UBERON:0007285!1.75e-11!83;UBERON:0004290!4.77e-11!70;UBERON:0000486!3.26e-10!82;UBERON:0003104!6.97e-10!238;UBERON:0009142!6.97e-10!238;UBERON:0000490!4.80e-09!138;UBERON:0001134!2.72e-08!61;UBERON:0002036!2.72e-08!61;UBERON:0003082!2.72e-08!61;UBERON:0001637!8.05e-08!42;UBERON:0003509!8.05e-08!42;UBERON:0004572!8.05e-08!42;UBERON:0002385!2.11e-07!63;UBERON:0001015!2.11e-07!63;UBERON:0000383!2.11e-07!63;UBERON:0001737!4.76e-07!9;UBERON:0005256!5.03e-07!143 | |ontology_enrichment_uberon=UBERON:0000914!1.75e-11!83;UBERON:0002329!1.75e-11!83;UBERON:0003077!1.75e-11!83;UBERON:0003059!1.75e-11!83;UBERON:0007282!1.75e-11!83;UBERON:0009618!1.75e-11!83;UBERON:0007285!1.75e-11!83;UBERON:0004290!4.77e-11!70;UBERON:0000486!3.26e-10!82;UBERON:0003104!6.97e-10!238;UBERON:0009142!6.97e-10!238;UBERON:0000490!4.80e-09!138;UBERON:0001134!2.72e-08!61;UBERON:0002036!2.72e-08!61;UBERON:0003082!2.72e-08!61;UBERON:0001637!8.05e-08!42;UBERON:0003509!8.05e-08!42;UBERON:0004572!8.05e-08!42;UBERON:0002385!2.11e-07!63;UBERON:0001015!2.11e-07!63;UBERON:0000383!2.11e-07!63;UBERON:0001737!4.76e-07!9;UBERON:0005256!5.03e-07!143 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.80e-07;9!UBERON:0001557;4.80e-07;9 | |ontology_enrichment_uberon_v019=UBERON:0001737;4.80e-07;9!UBERON:0001557;4.80e-07;9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000490,2.18e-11,148;UBERON:0002329,5.15e-11,71;UBERON:0003059,5.15e-11,71;UBERON:0007282,5.15e-11,71;UBERON:0004290,5.15e-11,71;UBERON:0009618,5.15e-11,71;UBERON:0003077,1.84e-10,72;UBERON:0007285,1.84e-10,72;UBERON:0007524,2.38e-10,73;UBERON:0000486,3.37e-10,83;UBERON:0007503,5.74e-10,78;UBERON:0001134,2.85e-08,62;UBERON:0002036,2.85e-08,62;UBERON:0003082,2.85e-08,62;UBERON:0001637,8.05e-08,42;UBERON:0003509,8.05e-08,42;UBERON:0004572,8.05e-08,42;UBERON:0002385,2.17e-07,64;UBERON:0001015,2.17e-07,64;UBERON:0000383,2.17e-07,64;UBERON:0001737,4.76e-07,9;UBERON:0005256,8.00e-07,122 | |||
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| ||
|short_description=p1@RPS4X | |short_description=p1@RPS4X | ||
}} | }} |
Latest revision as of 08:22, 16 September 2015
Short description: | p1@RPS4X |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RPS4X_5end |
Coexpression cluster: | C1162_embryonic_iPS_Keratinocyte_giant_teratocarcinoma_acute_chronic |
Association with transcript: | 0bp_to_ENST00000373626_5end |
EntrezGene: | RPS4X |
HGNC: | 10424 |
UniProt: | A6NH36 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.16e-23 | 250 |
epithelial cell | 3.96e-21 | 253 |
electrically responsive cell | 4.14e-11 | 61 |
electrically active cell | 4.14e-11 | 61 |
mesodermal cell | 2.86e-10 | 121 |
muscle precursor cell | 3.90e-10 | 58 |
myoblast | 3.90e-10 | 58 |
multi-potent skeletal muscle stem cell | 3.90e-10 | 58 |
muscle cell | 9.05e-10 | 55 |
squamous epithelial cell | 2.52e-09 | 63 |
smooth muscle cell | 3.81e-07 | 43 |
smooth muscle myoblast | 3.81e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
unilaminar epithelium | 2.18e-11 | 148 |
somite | 5.15e-11 | 71 |
presomitic mesoderm | 5.15e-11 | 71 |
presumptive segmental plate | 5.15e-11 | 71 |
dermomyotome | 5.15e-11 | 71 |
trunk paraxial mesoderm | 5.15e-11 | 71 |
paraxial mesoderm | 1.84e-10 | 72 |
presumptive paraxial mesoderm | 1.84e-10 | 72 |
dense mesenchyme tissue | 2.38e-10 | 73 |
multilaminar epithelium | 3.37e-10 | 83 |
epithelial vesicle | 5.74e-10 | 78 |
skeletal muscle tissue | 2.85e-08 | 62 |
striated muscle tissue | 2.85e-08 | 62 |
myotome | 2.85e-08 | 62 |
artery | 8.05e-08 | 42 |
arterial blood vessel | 8.05e-08 | 42 |
arterial system | 8.05e-08 | 42 |
muscle tissue | 2.17e-07 | 64 |
musculature | 2.17e-07 | 64 |
musculature of body | 2.17e-07 | 64 |
larynx | 4.76e-07 | 9 |
trunk mesenchyme | 8.00e-07 | 122 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 2.40e-26 | 239 |
cancer | 2.91e-25 | 235 |
cell type cancer | 1.21e-12 | 143 |
carcinoma | 3.56e-12 | 106 |
organ system cancer | 3.05e-11 | 137 |