FFCP PHASE1:Hg19::chr5:149493012..149493025,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1436 | |EntrezGene=1436 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2433 | |HGNC=2433 | ||
|TSSclassifier=strong | |||
|UniProt=P07333,D6RGW1 | |UniProt=P07333,D6RGW1 | ||
|association_with_transcript=-77bp_to_ENST00000286301,ENST00000511344,NM_005211,uc003lrm.2_5end | |association_with_transcript=-77bp_to_ENST00000286301,ENST00000511344,NM_005211,uc003lrm.2_5end | ||
|cluster_id=chr5:149493012..149493025,- | |||
|description=CAGE_peak_8_at_CSF1R_5end | |description=CAGE_peak_8_at_CSF1R_5end | ||
|id=chr5:149493012..149493025,- | |id=chr5:149493012..149493025,- | ||
|ontology_enrichment_celltype=CL:0002541!5.28e-10!3;CL:0002580!2.15e-09!3;CL:0002536!5.96e-07!2 | |ontology_enrichment_celltype=CL:0002541!5.28e-10!3;CL:0002580!2.15e-09!3;CL:0002536!5.96e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0002541;8.03e-23;3!CL:0000039;1.72e-10;7!CL:0000586;1.72e-10;7!CL:0000349;2.11e-08;19!CL:0002521;6.69e-07;3!CL:0002577;8.86e-07;3!CL:0002586;8.86e-07;3 | |ontology_enrichment_celltype_v019=CL:0002541;8.03e-23;3!CL:0000039;1.72e-10;7!CL:0000586;1.72e-10;7!CL:0000349;2.11e-08;19!CL:0002521;6.69e-07;3!CL:0002577;8.86e-07;3!CL:0002586;8.86e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002541,1.56e-22,3;CL:0000039,1.68e-10,7;CL:0000586,1.68e-10,7;CL:0000349,2.37e-08,19;CL:0002521,6.88e-07,3;CL:0002586,7.28e-07,3;CL:0002577,8.15e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0003124;9.48e-18;1!UBERON:0003056;5.80e-07;3 | |ontology_enrichment_development_v019=UBERON:0003124;9.48e-18;1!UBERON:0003056;5.80e-07;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1799;9.48e-18;1!DOID:10165;9.48e-18;1!DOID:1798;9.48e-18;1 | |ontology_enrichment_disease_v019=DOID:1799;9.48e-18;1!DOID:10165;9.48e-18;1!DOID:1798;9.48e-18;1 | ||
|ontology_enrichment_disease_v019_2=DOID:1799,1.03e-17,1;DOID:10165,1.03e-17,1;DOID:1798,1.03e-17,1 | |||
|ontology_enrichment_uberon=UBERON:0003124!7.36e-16!7;UBERON:0005631!5.59e-13!14;UBERON:0000158!5.59e-13!14;UBERON:0000476!5.28e-10!3;UBERON:0000920!5.28e-10!3;UBERON:0004923!4.25e-08!57;UBERON:0001987!7.63e-08!4;UBERON:0004340!7.63e-08!4;UBERON:0003296!1.93e-07!4;UBERON:0010133!1.93e-07!4;UBERON:0001905!2.83e-07!2;UBERON:0002757!2.83e-07!2;UBERON:0010134!2.83e-07!2;UBERON:0002784!2.83e-07!2;UBERON:0005408!2.83e-07!2;UBERON:0001899!2.83e-07!2;UBERON:0000478!6.10e-07!24 | |ontology_enrichment_uberon=UBERON:0003124!7.36e-16!7;UBERON:0005631!5.59e-13!14;UBERON:0000158!5.59e-13!14;UBERON:0000476!5.28e-10!3;UBERON:0000920!5.28e-10!3;UBERON:0004923!4.25e-08!57;UBERON:0001987!7.63e-08!4;UBERON:0004340!7.63e-08!4;UBERON:0003296!1.93e-07!4;UBERON:0010133!1.93e-07!4;UBERON:0001905!2.83e-07!2;UBERON:0002757!2.83e-07!2;UBERON:0010134!2.83e-07!2;UBERON:0002784!2.83e-07!2;UBERON:0005408!2.83e-07!2;UBERON:0001899!2.83e-07!2;UBERON:0000478!6.10e-07!24 | ||
|ontology_enrichment_uberon_v019=UBERON:0003124;8.03e-23;3!UBERON:0000920;8.03e-23;3!UBERON:0001987;2.19e-17;4!UBERON:0000966;2.49e-14;5!UBERON:0005388;2.49e-14;5!UBERON:0001802;2.49e-14;5!UBERON:0000478;2.80e-11;24!UBERON:0001905;9.87e-10;2!UBERON:0002757;9.87e-10;2!UBERON:0010134;9.87e-10;2!UBERON:0005408;9.87e-10;2!UBERON:0001899;9.87e-10;2!UBERON:0005631;1.62e-07;10!UBERON:0000158;1.62e-07;10!UBERON:0002190;6.69e-07;3!UBERON:0001781;8.86e-07;3!UBERON:0001782;8.86e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0003124;8.03e-23;3!UBERON:0000920;8.03e-23;3!UBERON:0001987;2.19e-17;4!UBERON:0000966;2.49e-14;5!UBERON:0005388;2.49e-14;5!UBERON:0001802;2.49e-14;5!UBERON:0000478;2.80e-11;24!UBERON:0001905;9.87e-10;2!UBERON:0002757;9.87e-10;2!UBERON:0010134;9.87e-10;2!UBERON:0005408;9.87e-10;2!UBERON:0001899;9.87e-10;2!UBERON:0005631;1.62e-07;10!UBERON:0000158;1.62e-07;10!UBERON:0002190;6.69e-07;3!UBERON:0001781;8.86e-07;3!UBERON:0001782;8.86e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003124,1.42e-37,7;UBERON:0000920,1.56e-22,3;UBERON:0005631,4.94e-19,14;UBERON:0000158,4.94e-19,14;UBERON:0001987,1.57e-17,4;UBERON:0004340,1.57e-17,4;UBERON:0000966,3.44e-12,6;UBERON:0005388,3.44e-12,6;UBERON:0001802,3.44e-12,6;UBERON:0000478,2.96e-11,24;UBERON:0001905,9.46e-10,2;UBERON:0002757,9.46e-10,2;UBERON:0010134,9.46e-10,2;UBERON:0005408,9.46e-10,2;UBERON:0001899,9.46e-10,2;UBERON:0002190,6.88e-07,3;UBERON:0001782,7.28e-07,3;UBERON:0005424,7.28e-07,3 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,2.53299878168311,0,0,0,0,0.436882744260345,0.263766978228454,0,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0,0,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0.643240938192885,0,0,0,0.118306800039844,0.337169380156203,0,0,0,0,0,0,0.38474715694639,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0.845302752556,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0.157702415033935,0,0,0,0,0,0.184369168541703,0,0.195801157462741,0,0,0,0,0,1.66435439510497,0.907170879989041,0.248107807818777,0.153461973288062,0.841980283299221,0,0,0,0,0.154209693802656,0,0.0821271560138091,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.656029291399411,1.95227036798582,1.44257416306811,0,0,0,0,0,0.096670718292122,0,0,0,0.107420244868274,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61394733071642,4.66739750930815,0.108647371922008,0.31900115973192,1.09917112082235,1.06606955203727,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677942222341597,0,0,0,0,0,0,0.19980960958213,0,0,0,0,0,0,0.135904206073614,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.674921674654501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385239660814607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,1.57144016688853,0,0.295712172434091,0,0,0,0,0,0,0,0,0.127762427639595,2.67850917939143,0.336283722218824,0,0.227662191351298,1.77404740325278,0,0,0,0,0,0,0,0,0,0,0,0,6.36141243172241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.128915775947154,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639701945702943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0.214100523890983,0,0,0,0,2.53299878168311,0,0,0,0,0.436882744260345,0.263766978228454,0,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0,0,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0.643240938192885,0,0,0,0.118306800039844,0.337169380156203,0,0,0,0,0,0,0.38474715694639,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0.845302752556,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0.157702415033935,0,0,0,0,0,0.184369168541703,0,0.195801157462741,0,0,0,0,0,1.66435439510497,0.907170879989041,0.248107807818777,0.153461973288062,0.841980283299221,0,0,0,0,0.154209693802656,0,0.0821271560138091,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.656029291399411,1.95227036798582,1.44257416306811,0,0,0,0,0,0.096670718292122,0,0,0,0.107420244868274,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61394733071642,4.66739750930815,0.108647371922008,0.31900115973192,1.09917112082235,1.06606955203727,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677942222341597,0,0,0,0,0,0,0.19980960958213,0,0,0,0,0,0,0.135904206073614,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.674921674654501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385239660814607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.150420656698515,0,0,1.57144016688853,0,0.295712172434091,0,0,0,0,0,0,0,0,0.127762427639595,2.67850917939143,0.336283722218824,0,0.227662191351298,1.77404740325278,0,0,0,0,0,0,0,0,0,0,0,0,6.36141243172241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.128915775947154,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639701945702943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p8@CSF1R | |short_description=p8@CSF1R | ||
}} | }} |
Latest revision as of 02:57, 16 September 2015
Short description: | p8@CSF1R |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_CSF1R_5end |
Coexpression cluster: | NA |
Association with transcript: | -77bp_to_ENST00000286301, ENST00000511344, NM_005211, uc003lrm.2_5end |
EntrezGene: | CSF1R |
HGNC: | 2433 |
UniProt: | P07333D6RGW1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 1.56e-22 | 3 |
germ line cell | 1.68e-10 | 7 |
germ cell | 1.68e-10 | 7 |
extraembryonic cell | 2.37e-08 | 19 |
subcutaneous fat cell | 6.88e-07 | 3 |
retinal pigment epithelial cell | 7.28e-07 | 3 |
placental epithelial cell | 8.15e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
chorion | 1.42e-37 | 7 |
egg chorion | 1.56e-22 | 3 |
extraembryonic membrane | 4.94e-19 | 14 |
membranous layer | 4.94e-19 | 14 |
placenta | 1.57e-17 | 4 |
allantois | 1.57e-17 | 4 |
retina | 3.44e-12 | 6 |
photoreceptor array | 3.44e-12 | 6 |
posterior segment of eyeball | 3.44e-12 | 6 |
extraembryonic structure | 2.96e-11 | 24 |
pineal body | 9.46e-10 | 2 |
regional part of epithalamus | 9.46e-10 | 2 |
secretory circumventricular organ | 9.46e-10 | 2 |
circumventricular organ | 9.46e-10 | 2 |
epithalamus | 9.46e-10 | 2 |
subcutaneous adipose tissue | 6.88e-07 | 3 |
pigmented layer of retina | 7.28e-07 | 3 |
presumptive retinal pigmented epithelium | 7.28e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 1.03e-17 | 1 |
endocrine pancreas cancer | 1.03e-17 | 1 |
pancreatic endocrine carcinoma | 1.03e-17 | 1 |