FFCP PHASE1:Hg19::chr10:115939074..115939093,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56165 | |EntrezGene=56165 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11712 | |HGNC=11712 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=23bp_to_uc001lbh.1_5end | |association_with_transcript=23bp_to_uc001lbh.1_5end | ||
|cluster_id=chr10:115939074..115939093,+ | |||
|coexpression_cluster_id=C2981 | |coexpression_cluster_id=C2981 | ||
|description=CAGE_peak_3_at_TDRD1_5end | |description=CAGE_peak_3_at_TDRD1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000039;7.15e-10;7!CL:0000586;7.15e-10;7 | |ontology_enrichment_celltype_v019=CL:0000039;7.15e-10;7!CL:0000586;7.15e-10;7 | ||
|ontology_enrichment_celltype_v019_2=CL:0000039,7.31e-10,7;CL:0000586,7.31e-10,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;6.59e-25;10!UBERON:0005564;6.59e-25;10 | |ontology_enrichment_development_v019=UBERON:0009117;6.59e-25;10!UBERON:0005564;6.59e-25;10 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0050619;4.72e-17;1!DOID:1357;4.72e-17;1!DOID:3151;9.58e-17;1!DOID:3149;9.58e-17;1!DOID:3451;4.89e-09;2!DOID:4159;4.89e-09;2!DOID:0060122;4.89e-09;2 | |ontology_enrichment_disease_v019=DOID:0050619;4.72e-17;1!DOID:1357;4.72e-17;1!DOID:3151;9.58e-17;1!DOID:3149;9.58e-17;1!DOID:3451;4.89e-09;2!DOID:4159;4.89e-09;2!DOID:0060122;4.89e-09;2 | ||
|ontology_enrichment_disease_v019_2=DOID:0050619,4.72e-17,1;DOID:1357,4.72e-17,1;DOID:3151,1.04e-16,1;DOID:3149,1.04e-16,1;DOID:3451,5.08e-09,2;DOID:4159,5.08e-09,2;DOID:0060122,5.08e-09,2 | |||
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|ontology_enrichment_uberon_v019=UBERON:0000473;5.13e-31;8!UBERON:0003135;1.11e-22;11!UBERON:0001764;4.72e-17;1!UBERON:0001825;4.72e-17;1!UBERON:0000991;4.72e-12;21!UBERON:0003101;1.62e-11;22!UBERON:0000079;1.62e-11;22 | |ontology_enrichment_uberon_v019=UBERON:0000473;5.13e-31;8!UBERON:0003135;1.11e-22;11!UBERON:0001764;4.72e-17;1!UBERON:0001825;4.72e-17;1!UBERON:0000991;4.72e-12;21!UBERON:0003101;1.62e-11;22!UBERON:0000079;1.62e-11;22 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,5.34e-31,8;UBERON:0003135,1.14e-22,11;UBERON:0001764,4.72e-17,1;UBERON:0001825,4.72e-17,1;UBERON:0000991,4.79e-12,21;UBERON:0009196,4.79e-12,21;UBERON:0009117,4.79e-12,21;UBERON:0005564,4.79e-12,21;UBERON:0004176,1.64e-11,22;UBERON:0003101,1.64e-11,22;UBERON:0000079,1.64e-11,22 | |||
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| ||
|short_description=p3@TDRD1 | |short_description=p3@TDRD1 | ||
}} | }} |
Latest revision as of 12:24, 16 September 2015
Short description: | p3@TDRD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TDRD1_5end |
Coexpression cluster: | C2981_maxillary_testicular_testis_renal_keratoacanthoma_liposarcoma_breast |
Association with transcript: | 23bp_to_uc001lbh.1_5end |
EntrezGene: | TDRD1 |
HGNC: | 11712 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 7.31e-10 | 7 |
germ cell | 7.31e-10 | 7 |
Ontology term | p-value | n |
---|---|---|
testis | 5.34e-31 | 8 |
male reproductive organ | 1.14e-22 | 11 |
maxillary sinus | 4.72e-17 | 1 |
paranasal sinus | 4.72e-17 | 1 |
gonad | 4.79e-12 | 21 |
indifferent external genitalia | 4.79e-12 | 21 |
indifferent gonad | 4.79e-12 | 21 |
gonad primordium | 4.79e-12 | 21 |
external genitalia | 1.64e-11 | 22 |
male organism | 1.64e-11 | 22 |
male reproductive system | 1.64e-11 | 22 |
Ontology term | p-value | n |
---|---|---|
paranasal sinus cancer | 4.72e-17 | 1 |
maxillary sinus cancer | 4.72e-17 | 1 |
skin squamous cell carcinoma | 1.04e-16 | 1 |
keratoacanthoma | 1.04e-16 | 1 |
skin carcinoma | 5.08e-09 | 2 |
skin cancer | 5.08e-09 | 2 |
integumentary system cancer | 5.08e-09 | 2 |