FFCP PHASE1:Hg19::chr17:48264135..48264149,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=24bp_to_ENST00000510710_5end | |association_with_transcript=24bp_to_ENST00000510710_5end | ||
|cluster_id=chr17:48264135..48264149,- | |||
|coexpression_cluster_id=C59 | |coexpression_cluster_id=C59 | ||
|description=CAGE_peak_33_at_COL1A1_5end | |description=CAGE_peak_33_at_COL1A1_5end | ||
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|ontology_enrichment_celltype=CL:0000055!6.23e-40!180;CL:0000057!2.01e-26!75;CL:0000183!1.22e-17!59;CL:0000680!1.47e-16!57;CL:0000056!1.47e-16!57;CL:0000355!1.47e-16!57;CL:0000187!1.49e-16!54;CL:0000393!2.39e-14!60;CL:0000211!2.39e-14!60;CL:0000048!4.61e-13!430;CL:0000192!1.50e-12!42;CL:0000514!1.50e-12!42;CL:0000723!4.45e-12!436;CL:0000034!2.35e-11!444;CL:0002371!3.68e-10!591;CL:0002620!5.35e-10!23;CL:0000144!3.41e-09!625;CL:0000499!9.24e-09!27;CL:0002334!1.83e-08!12;CL:0000359!2.41e-08!32;CL:0000327!6.34e-07!14 | |ontology_enrichment_celltype=CL:0000055!6.23e-40!180;CL:0000057!2.01e-26!75;CL:0000183!1.22e-17!59;CL:0000680!1.47e-16!57;CL:0000056!1.47e-16!57;CL:0000355!1.47e-16!57;CL:0000187!1.49e-16!54;CL:0000393!2.39e-14!60;CL:0000211!2.39e-14!60;CL:0000048!4.61e-13!430;CL:0000192!1.50e-12!42;CL:0000514!1.50e-12!42;CL:0000723!4.45e-12!436;CL:0000034!2.35e-11!444;CL:0002371!3.68e-10!591;CL:0002620!5.35e-10!23;CL:0000144!3.41e-09!625;CL:0000499!9.24e-09!27;CL:0002334!1.83e-08!12;CL:0000359!2.41e-08!32;CL:0000327!6.34e-07!14 | ||
|ontology_enrichment_celltype_v019=CL:0000134;2.79e-11;55!CL:0000723;9.98e-11;61!CL:0002334;2.01e-10;12!CL:0000048;3.93e-10;58!CL:0000499;1.73e-09;28!CL:0002320;5.14e-09;188!CL:0000327;9.54e-09;15!CL:0000057;1.35e-08;73!CL:0002620;1.54e-08;23!CL:0002570;4.31e-08;8!CL:0000034;1.82e-07;69!CL:0000187;2.68e-07;55!CL:0000192;6.45e-07;43 | |ontology_enrichment_celltype_v019=CL:0000134;2.79e-11;55!CL:0000723;9.98e-11;61!CL:0002334;2.01e-10;12!CL:0000048;3.93e-10;58!CL:0000499;1.73e-09;28!CL:0002320;5.14e-09;188!CL:0000327;9.54e-09;15!CL:0000057;1.35e-08;73!CL:0002620;1.54e-08;23!CL:0002570;4.31e-08;8!CL:0000034;1.82e-07;69!CL:0000187;2.68e-07;55!CL:0000192;6.45e-07;43 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.29e-23,76;CL:0000048,2.37e-16,427;CL:0000723,1.71e-15,433;CL:0000034,2.14e-14,441;CL:0000680,3.44e-12,58;CL:0000056,3.44e-12,58;CL:0000355,3.44e-12,58;CL:0000187,7.20e-12,55;CL:0002334,1.94e-10,12;CL:0002320,5.91e-10,361;CL:0000192,9.65e-10,43;CL:0000514,9.65e-10,43;CL:0000393,1.25e-09,61;CL:0000211,1.25e-09,61;CL:0000499,1.55e-09,28;CL:0000327,7.94e-09,15;CL:0002620,1.75e-08,23;CL:0002570,4.29e-08,8;CL:0000134,5.23e-08,354 | |||
|ontology_enrichment_development_v019=CL:0000355;3.99e-07;58!CL:0000514;6.45e-07;43 | |ontology_enrichment_development_v019=CL:0000355;3.99e-07;58!CL:0000514;6.45e-07;43 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!9.42e-20!83;UBERON:0002329!9.42e-20!83;UBERON:0003077!9.42e-20!83;UBERON:0003059!9.42e-20!83;UBERON:0007282!9.42e-20!83;UBERON:0009618!9.42e-20!83;UBERON:0007285!9.42e-20!83;UBERON:0004290!2.73e-18!70;UBERON:0001134!3.51e-17!61;UBERON:0002036!3.51e-17!61;UBERON:0003082!3.51e-17!61;UBERON:0002385!1.08e-16!63;UBERON:0001015!1.08e-16!63;UBERON:0000383!1.08e-16!63;UBERON:0000486!3.12e-14!82;UBERON:0005256!3.14e-13!143;UBERON:0002100!4.52e-09!216;UBERON:0002199!1.10e-07!45;UBERON:0002416!1.10e-07!45;UBERON:0004872!1.41e-07!84;UBERON:0000490!1.63e-07!138;UBERON:0001013!3.41e-07!14;UBERON:0000475!3.79e-07!365 | |ontology_enrichment_uberon=UBERON:0000914!9.42e-20!83;UBERON:0002329!9.42e-20!83;UBERON:0003077!9.42e-20!83;UBERON:0003059!9.42e-20!83;UBERON:0007282!9.42e-20!83;UBERON:0009618!9.42e-20!83;UBERON:0007285!9.42e-20!83;UBERON:0004290!2.73e-18!70;UBERON:0001134!3.51e-17!61;UBERON:0002036!3.51e-17!61;UBERON:0003082!3.51e-17!61;UBERON:0002385!1.08e-16!63;UBERON:0001015!1.08e-16!63;UBERON:0000383!1.08e-16!63;UBERON:0000486!3.12e-14!82;UBERON:0005256!3.14e-13!143;UBERON:0002100!4.52e-09!216;UBERON:0002199!1.10e-07!45;UBERON:0002416!1.10e-07!45;UBERON:0004872!1.41e-07!84;UBERON:0000490!1.63e-07!138;UBERON:0001013!3.41e-07!14;UBERON:0000475!3.79e-07!365 | ||
|ontology_enrichment_uberon_v019=UBERON:0002384;2.04e-08;198!UBERON:0001013;1.81e-07;14!UBERON:0004457;5.73e-07;9!UBERON:0000042;5.73e-07;9 | |ontology_enrichment_uberon_v019=UBERON:0002384;2.04e-08;198!UBERON:0001013;1.81e-07;14!UBERON:0004457;5.73e-07;9!UBERON:0000042;5.73e-07;9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,1.03e-12,62;UBERON:0002036,1.03e-12,62;UBERON:0003082,1.03e-12,62;UBERON:0007524,1.52e-12,73;UBERON:0002329,2.56e-12,71;UBERON:0003059,2.56e-12,71;UBERON:0007282,2.56e-12,71;UBERON:0004290,2.56e-12,71;UBERON:0009618,2.56e-12,71;UBERON:0003077,5.80e-12,72;UBERON:0007285,5.80e-12,72;UBERON:0007503,5.91e-12,78;UBERON:0002385,6.30e-12,64;UBERON:0001015,6.30e-12,64;UBERON:0000383,6.30e-12,64;UBERON:0002384,1.65e-10,371;UBERON:0000486,3.63e-10,83;UBERON:0003104,1.06e-08,160;UBERON:0009142,1.06e-08,160;UBERON:0002199,3.17e-08,46;UBERON:0002416,3.17e-08,46;UBERON:0005256,3.70e-08,122;UBERON:0001013,1.85e-07,14;UBERON:0002097,2.65e-07,41 | |||
|phase1_expression=3.99692434395225,6.85121676451146,6.48390258841467,6.00439790118782,5.36353313312745,6.10636966870258,12.6649939084155,0,0.261185628199839,0.245733936501509,0,0.218441372130172,4.48403862988371,2.10402800032079,4.30816588446291,2.01697543935533,3.01347264011988,0.730310090387373,2.43966399395253,1.72369481307503,3.67201244239655,5.32873026512749,0.572471974262113,0.136874425072884,0.251085279189606,0,0,0,0,0,0.464448369948228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.6284119788377,4.02420515822182,2.9408389224012,3.61439152384566,6.51739283826656,8.98048417557107,11.9292892057665,5.83961844363163,0.661743720148475,4.21285855178871,2.19586964232815,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.8788780678127,3.79891534993739,0.662045904066094,12.0471380714502,4.965357350777,5.60677600142307,6.4049397437823,17.5133959376184,0.311211035399766,0.942974704487816,1.63461903113459,4.54072282934794,10.94734256512,0.937285727335186,1.24864030732128,0.570471821544449,1.34503812496621,0.352303495931295,0.161872944368132,0.421352420106746,0.408308342509787,0.61417158655884,0.929932030581889,3.56400857184616,13.8469480395992,7.28129089550421,12.2165084108761,0.168336113954066,0.625592599359821,0.277064115484183,3.5118209670467,6.74273150757843,4.05642759047811,1.58805056424029,7.35497506324334,8.11518077510556,5.51022943014861,4.80145753735044,3.7098910525838,7.47157566132325,4.65292140828975,6.58227695740938,4.18979122193154,7.32057945307932,4.05019554026117,4.36444353410792,9.58525899794859,2.41805035746337,1.86516651541536,0,0,0,0,0,0.232387885739037,0.207322110030741,0,0,1.56449532329816,8.36213219650751,0,3.25057549622385,4.33127689001751,0,0,0,0.110293972732394,0.217879444092406,0,0.134831308160164,0,0,0.738155454624648,0,8.231480226628,20.5812195939759,0,0,0,0,0,1.71567810298526,0,0,0,0,0,1.03993478527958,4.3299402607582,0.579652024875384,9.39269553886573,0.144366447761074,0,0,0,0,0,0,0,0,0.335964256397719,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,1.56983518083505,1.74384027533312,2.0534720029866,1.93907573636667,10.7296933755565,7.607724773004,3.98907174877306,1.04007436911366,3.34369586540785,1.41849132023278,1.3321108950805,8.721657613147,29.8441882965294,2.46972101034231,3.25736184293735,9.95097456479128,2.37585561880029,0.301439377059586,0.871533458600294,0.399891964728228,0,0,0,6.70949595376431,11.4861935834114,1.42636905040718,1.59259437334337,2.4657158706046,0,0,0,0,0,0,1.30139853857622,0,0.167516265334349,0,0,0,0,4.17151071845076,7.00238729483548,1.89885516589815,38.2666385216685,36.7563716922153,28.0710298760404,9.37131319941706,1.20378439891088,0,3.10419213877515,2.65690239414175,1.65932251687533,1.65078867489357,5.87403472388222,6.86286847621712,0,0,0,0,8.32177197552485,7.86214762657169,8.18755765801964,6.90578879796281,26.662708971142,8.84160129864337,7.67560873600055,17.8547852469404,4.45254199334973,3.08419387605311,8.16783936440384,2.46381468041427,2.07701771673448,3.7187321107187,0,0.200506470303285,0,3.55924789310281,5.28064387219479,5.11385218341754,0,0,0.784349769176855,0,0.105551628892876,0,0,1.94324324491925,0,1.62567862526312,2.00675909541941,0,0,0,0,0,0,0.328014645699706,0,0.103041011647722,1.55668090191184,0.660075999364704,0,1.95018073810956,6.42735719376638,0.580024309752732,0.308097234229289,0.767518373630648,0.964856007391714,2.25582514223375,4.0604674295984,1.44885266607372,11.1290044558422,0.165284915360978,0.192190067365106,0,0.2023155617111,0.929691098594572,16.6850543820239,1.3940745403212,4.00443654228915,0.532306030317022,1.73986598415015,0.55597265731176,0.143124886741991,1.116475108079,3.48017367190598,4.38449446024797,3.83846686967001,6.41908482050881,0.318203247925937,2.35484592059769,1.61885211824983,6.03981465419321,3.06312246098785,0.808729926293264,1.58510321173008,0,4.8763373908959,2.68084838594413,0,2.59349831675173,8.06010962136163,2.26016233240486,1.10273068709225,2.65375590096488,0.438450885253763,5.78775534266688,5.9030527684197,1.82619339266434,0.6196469961995,0.563391205064483,2.86822704408103,4.22470876356421,2.49669736036875,1.06428319221179,5.9110137883346,6.25660296623814,0.75894634753143,1.39973888097993,0,0.670302275535787,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0.307160702099232,0,0,0,0,0,0.996239941255349,0.276283915531148,0,0,0,11.1974251558251,0,0,0,0.789147245095469,0,3.33410970433911,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0.173624994933292,0,0.120596438625408,0,0,0,0,0,0,1.46205491157214,0.227884111694002,0,0,0,0,1.55715908783166,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0,1.83309043480088,0.296521128680622,0,0,0,21.6695964770673,0,0,0,0,0.394584402849391,3.62972148145992,0,0.379119477770928,0,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| ||
|short_description=p33@COL1A1 | |short_description=p33@COL1A1 | ||
}} | }} |
Latest revision as of 00:02, 16 September 2015
Short description: | p33@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_33_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 24bp_to_ENST00000510710_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.29e-23 | 76 |
multi fate stem cell | 2.37e-16 | 427 |
somatic stem cell | 1.71e-15 | 433 |
stem cell | 2.14e-14 | 441 |
muscle precursor cell | 3.44e-12 | 58 |
myoblast | 3.44e-12 | 58 |
multi-potent skeletal muscle stem cell | 3.44e-12 | 58 |
muscle cell | 7.20e-12 | 55 |
preadipocyte | 1.94e-10 | 12 |
connective tissue cell | 5.91e-10 | 361 |
smooth muscle cell | 9.65e-10 | 43 |
smooth muscle myoblast | 9.65e-10 | 43 |
electrically responsive cell | 1.25e-09 | 61 |
electrically active cell | 1.25e-09 | 61 |
stromal cell | 1.55e-09 | 28 |
extracellular matrix secreting cell | 7.94e-09 | 15 |
skin fibroblast | 1.75e-08 | 23 |
mesenchymal stem cell of adipose | 4.29e-08 | 8 |
mesenchymal cell | 5.23e-08 | 354 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 1.03e-12 | 62 |
striated muscle tissue | 1.03e-12 | 62 |
myotome | 1.03e-12 | 62 |
dense mesenchyme tissue | 1.52e-12 | 73 |
somite | 2.56e-12 | 71 |
presomitic mesoderm | 2.56e-12 | 71 |
presumptive segmental plate | 2.56e-12 | 71 |
dermomyotome | 2.56e-12 | 71 |
trunk paraxial mesoderm | 2.56e-12 | 71 |
paraxial mesoderm | 5.80e-12 | 72 |
presumptive paraxial mesoderm | 5.80e-12 | 72 |
epithelial vesicle | 5.91e-12 | 78 |
muscle tissue | 6.30e-12 | 64 |
musculature | 6.30e-12 | 64 |
musculature of body | 6.30e-12 | 64 |
connective tissue | 1.65e-10 | 371 |
multilaminar epithelium | 3.63e-10 | 83 |
mesenchyme | 1.06e-08 | 160 |
entire embryonic mesenchyme | 1.06e-08 | 160 |
integument | 3.17e-08 | 46 |
integumental system | 3.17e-08 | 46 |
trunk mesenchyme | 3.70e-08 | 122 |
adipose tissue | 1.85e-07 | 14 |
skin of body | 2.65e-07 | 41 |