FFCP PHASE1:Hg19::chr13:28494375..28494416,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3651 | |EntrezGene=3651 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6107 | |HGNC=6107 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=101bp_to_BC111592_5end | |association_with_transcript=101bp_to_BC111592_5end | ||
|cluster_id=chr13:28494375..28494416,+ | |||
|coexpression_cluster_id=C1110 | |coexpression_cluster_id=C1110 | ||
|description=CAGE_peak_4_at_PDX1_5end | |description=CAGE_peak_4_at_PDX1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000080!4.46e-11!6;CL:1001319!1.21e-07!1;CL:1000600!1.21e-07!1 | |ontology_enrichment_celltype=CL:0000080!4.46e-11!6;CL:1001319!1.21e-07!1;CL:1000600!1.21e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0002535;7.05e-18;2 | |ontology_enrichment_celltype_v019=CL:0002535;7.05e-18;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002535,7.67e-18,2 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:4929!5.65e-14!2;DOID:3493!7.36e-14!2;DOID:0060060!2.52e-08!1;DOID:0060061!2.52e-08!1;DOID:8691!2.52e-08!1;DOID:3119!8.17e-08!14;DOID:225!8.69e-08!1 | |ontology_enrichment_disease=DOID:4929!5.65e-14!2;DOID:3493!7.36e-14!2;DOID:0060060!2.52e-08!1;DOID:0060061!2.52e-08!1;DOID:8691!2.52e-08!1;DOID:3119!8.17e-08!14;DOID:225!8.69e-08!1 | ||
|ontology_enrichment_disease_v019=DOID:4362;5.92e-08;5 | |ontology_enrichment_disease_v019=DOID:4362;5.92e-08;5 | ||
|ontology_enrichment_disease_v019_2=DOID:4362,6.13e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0002108!5.26e-11!14;UBERON:0000160!5.46e-11!27;UBERON:0005409!8.91e-11!35;UBERON:0001046!1.95e-08!19;UBERON:0002114!2.08e-08!12;UBERON:0004913!5.40e-08!1;UBERON:0003703!5.40e-08!1;UBERON:0001174!5.40e-08!1;UBERON:0004914!5.40e-08!1;UBERON:0004645!1.21e-07!1;UBERON:0001256!1.21e-07!1;UBERON:0001259!1.21e-07!1;UBERON:0000162!1.33e-07!14;UBERON:0001353!1.33e-07!14;UBERON:0000163!1.33e-07!14;UBERON:0006866!1.33e-07!14;UBERON:0000164!1.33e-07!14;UBERON:0000931!1.33e-07!14;UBERON:0004122!4.20e-07!15;UBERON:0002331!8.07e-07!10;UBERON:0000358!8.07e-07!10;UBERON:0000307!8.07e-07!10;UBERON:0000091!8.07e-07!10;UBERON:0000087!8.07e-07!10;UBERON:0007806!8.07e-07!10;UBERON:0008780!8.07e-07!10;UBERON:0005728!8.07e-07!10 | |ontology_enrichment_uberon=UBERON:0002108!5.26e-11!14;UBERON:0000160!5.46e-11!27;UBERON:0005409!8.91e-11!35;UBERON:0001046!1.95e-08!19;UBERON:0002114!2.08e-08!12;UBERON:0004913!5.40e-08!1;UBERON:0003703!5.40e-08!1;UBERON:0001174!5.40e-08!1;UBERON:0004914!5.40e-08!1;UBERON:0004645!1.21e-07!1;UBERON:0001256!1.21e-07!1;UBERON:0001259!1.21e-07!1;UBERON:0000162!1.33e-07!14;UBERON:0001353!1.33e-07!14;UBERON:0000163!1.33e-07!14;UBERON:0006866!1.33e-07!14;UBERON:0000164!1.33e-07!14;UBERON:0000931!1.33e-07!14;UBERON:0004122!4.20e-07!15;UBERON:0002331!8.07e-07!10;UBERON:0000358!8.07e-07!10;UBERON:0000307!8.07e-07!10;UBERON:0000091!8.07e-07!10;UBERON:0000087!8.07e-07!10;UBERON:0007806!8.07e-07!10;UBERON:0008780!8.07e-07!10;UBERON:0005728!8.07e-07!10 | ||
|ontology_enrichment_uberon_v019=UBERON:0006955;7.05e-18;2!UBERON:0004801;7.05e-18;2!UBERON:0002331;3.04e-14;10!UBERON:0000178;7.75e-10;15!UBERON:0000179;7.75e-10;15!UBERON:0000463;7.75e-10;15!UBERON:0000002;7.80e-07;6!UBERON:0001560;7.80e-07;6 | |ontology_enrichment_uberon_v019=UBERON:0006955;7.05e-18;2!UBERON:0004801;7.05e-18;2!UBERON:0002331;3.04e-14;10!UBERON:0000178;7.75e-10;15!UBERON:0000179;7.75e-10;15!UBERON:0000463;7.75e-10;15!UBERON:0000002;7.80e-07;6!UBERON:0001560;7.80e-07;6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,7.67e-18,2;UBERON:0004801,7.67e-18,2;UBERON:0002331,2.84e-14,10;UBERON:0000358,2.84e-14,10;UBERON:0000307,2.84e-14,10;UBERON:0000091,2.84e-14,10;UBERON:0000087,2.84e-14,10;UBERON:0007010,2.84e-14,10;UBERON:0007806,2.84e-14,10;UBERON:0008780,2.84e-14,10;UBERON:0005728,2.84e-14,10;UBERON:0000178,7.41e-10,15;UBERON:0000179,7.41e-10,15;UBERON:0000463,7.41e-10,15;UBERON:0000002,8.02e-07,6;UBERON:0001560,8.02e-07,6 | |||
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|short_description=p4@PDX1 | |short_description=p4@PDX1 | ||
}} | }} |
Latest revision as of 23:29, 16 September 2015
Short description: | p4@PDX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PDX1_5end |
Coexpression cluster: | C1110_cord_mycosis_colon_embryonic_argyrophil_xeroderma_CD19 |
Association with transcript: | 101bp_to_BC111592_5end |
EntrezGene: | PDX1 |
HGNC: | 6107 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 7.67e-18 | 2 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 7.67e-18 | 2 |
cervix epithelium | 7.67e-18 | 2 |
umbilical cord | 2.84e-14 | 10 |
blastocyst | 2.84e-14 | 10 |
blastula | 2.84e-14 | 10 |
bilaminar disc | 2.84e-14 | 10 |
inner cell mass | 2.84e-14 | 10 |
cleaving embryo | 2.84e-14 | 10 |
connecting stalk | 2.84e-14 | 10 |
inner cell mass derived epiblast | 2.84e-14 | 10 |
extraembryonic mesoderm | 2.84e-14 | 10 |
blood | 7.41e-10 | 15 |
haemolymphatic fluid | 7.41e-10 | 15 |
organism substance | 7.41e-10 | 15 |
uterine cervix | 8.02e-07 | 6 |
neck of organ | 8.02e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
cervical cancer | 6.13e-08 | 5 |