FFCP PHASE1:Hg19::chr1:11751574..11751662,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10459 | |EntrezGene=10459 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6764 | |HGNC=6764 | ||
|TSSclassifier=strong | |||
|UniProt=B1AK47 | |UniProt=B1AK47 | ||
|association_with_transcript=0bp_to_ENST00000376655_5end | |association_with_transcript=0bp_to_ENST00000376655_5end | ||
|cluster_id=chr1:11751574..11751662,- | |||
|coexpression_cluster_id=C49 | |coexpression_cluster_id=C49 | ||
|description=CAGE_peak_3_at_MAD2L2_5end | |description=CAGE_peak_3_at_MAD2L2_5end | ||
|id=chr1:11751574..11751662,- | |id=chr1:11751574..11751662,- | ||
|ontology_enrichment_celltype=CL:0002319!6.98e-11!25;CL:0000047!7.75e-08!8;CL:0000133!1.26e-07!59 | |ontology_enrichment_celltype=CL:0002319!6.98e-11!25;CL:0000047!7.75e-08!8;CL:0000133!1.26e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002319;4.96e-17;25!CL:0000540;1.98e-10;6!CL:0000404;1.98e-10;6!CL:0000128;2.59e-10;7!CL:0000126;2.59e-10;7!CL:0000127;2.59e-10;7!CL:0002322;1.42e-09;5!CL:0000095;1.20e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,4.16e-17,25;CL:0000047,3.24e-13,8;CL:0000133,7.03e-11,59;CL:0000540,2.00e-10,6;CL:0000031,2.00e-10,6;CL:0000404,2.00e-10,6;CL:0000128,2.49e-10,7;CL:0000126,2.49e-10,7;CL:0000127,2.49e-10,7;CL:0002453,2.49e-10,7;CL:0002322,1.42e-09,5;CL:0000095,1.08e-07,17;CL:0000123,1.08e-07,17;CL:0000221,1.17e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000031;1.98e-10;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!2.94e-22!86;UBERON:0000073!8.13e-22!94;UBERON:0001016!8.13e-22!94;UBERON:0001017!1.23e-21!82;UBERON:0002346!1.30e-15!90;UBERON:0000955!5.75e-15!69;UBERON:0006238!5.75e-15!69;UBERON:0003075!6.42e-15!86;UBERON:0007284!6.42e-15!86;UBERON:0000924!3.70e-14!173;UBERON:0006601!3.70e-14!173;UBERON:0003056!1.50e-13!61;UBERON:0004121!1.74e-13!169;UBERON:0001049!7.05e-13!57;UBERON:0005068!7.05e-13!57;UBERON:0006241!7.05e-13!57;UBERON:0007135!7.05e-13!57;UBERON:0000033!9.52e-13!123;UBERON:0000153!2.39e-12!129;UBERON:0007811!2.39e-12!129;UBERON:0002616!2.59e-12!59;UBERON:0001893!3.17e-12!34;UBERON:0002791!7.98e-12!33;UBERON:0002020!1.40e-11!34;UBERON:0003528!1.40e-11!34;UBERON:0001869!2.32e-11!32;UBERON:0003080!2.10e-10!42;UBERON:0002780!4.33e-10!41;UBERON:0001890!4.33e-10!41;UBERON:0006240!4.33e-10!41;UBERON:0000119!1.91e-08!312;UBERON:0000956!2.12e-08!25;UBERON:0000203!2.12e-08!25;UBERON:0000483!6.73e-08!309;UBERON:0001950!7.98e-07!20 | |ontology_enrichment_uberon=UBERON:0005743!2.94e-22!86;UBERON:0000073!8.13e-22!94;UBERON:0001016!8.13e-22!94;UBERON:0001017!1.23e-21!82;UBERON:0002346!1.30e-15!90;UBERON:0000955!5.75e-15!69;UBERON:0006238!5.75e-15!69;UBERON:0003075!6.42e-15!86;UBERON:0007284!6.42e-15!86;UBERON:0000924!3.70e-14!173;UBERON:0006601!3.70e-14!173;UBERON:0003056!1.50e-13!61;UBERON:0004121!1.74e-13!169;UBERON:0001049!7.05e-13!57;UBERON:0005068!7.05e-13!57;UBERON:0006241!7.05e-13!57;UBERON:0007135!7.05e-13!57;UBERON:0000033!9.52e-13!123;UBERON:0000153!2.39e-12!129;UBERON:0007811!2.39e-12!129;UBERON:0002616!2.59e-12!59;UBERON:0001893!3.17e-12!34;UBERON:0002791!7.98e-12!33;UBERON:0002020!1.40e-11!34;UBERON:0003528!1.40e-11!34;UBERON:0001869!2.32e-11!32;UBERON:0003080!2.10e-10!42;UBERON:0002780!4.33e-10!41;UBERON:0001890!4.33e-10!41;UBERON:0006240!4.33e-10!41;UBERON:0000119!1.91e-08!312;UBERON:0000956!2.12e-08!25;UBERON:0000203!2.12e-08!25;UBERON:0000483!6.73e-08!309;UBERON:0001950!7.98e-07!20 | ||
|ontology_enrichment_uberon_v019=UBERON:0001869;2.75e-08;32!UBERON:0001893;6.25e-08;34!UBERON:0002791;1.25e-07;32!UBERON:0002780;1.90e-07;41!UBERON:0001890;1.90e-07;41!UBERON:0000488;2.49e-07;4!UBERON:0000922;6.14e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.17e-16,81;UBERON:0001016,2.96e-15,89;UBERON:0002346,1.39e-12,86;UBERON:0003056,1.00e-11,61;UBERON:0003075,1.04e-11,82;UBERON:0007284,1.04e-11,82;UBERON:0004121,2.42e-10,171;UBERON:0000924,2.42e-10,171;UBERON:0006601,2.42e-10,171;UBERON:0000955,7.35e-10,68;UBERON:0006238,7.35e-10,68;UBERON:0001049,7.43e-09,56;UBERON:0005068,7.43e-09,56;UBERON:0006241,7.43e-09,56;UBERON:0007135,7.43e-09,56;UBERON:0010371,7.99e-09,104;UBERON:0001893,1.00e-08,34;UBERON:0000073,1.07e-08,53;UBERON:0002616,1.07e-08,53;UBERON:0001869,2.31e-08,32;UBERON:0002780,2.97e-08,41;UBERON:0001890,2.97e-08,41;UBERON:0003080,2.97e-08,41;UBERON:0006240,2.97e-08,41;UBERON:0002791,2.01e-07,32;UBERON:0000488,2.52e-07,4;UBERON:0011216,5.28e-07,223;UBERON:0003528,9.03e-07,34;UBERON:0002020,9.03e-07,34 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0.655324116390517,0.527533956456907,0,0,0,0,0,0.487932798790507,11.0808952269109,9.58803248847989,6.89600387251793,9.73202356245593,5.47497700291537,7.90918629447258,0,0,0,0.393364276848904,0.767658796194425,0,0,0,0,0,0,0,0,0.401088894940283,0.651032612147555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.545812300115692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31692042387539,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0.822189523018381,1.10540007114339,0.579606171470105,0,0,0,0.113309342697566,0,0,0,0,0,0,0.301150238155546,0,0,0,0,0.201606743224732,0,0.579297615531196,0,0,0,0,0,0.289693037921647,3.1811437882044,0.486634870302636,16.4490581865478,17.29489300208,10.9793482116408,0.589405839739707,0.728590576585084,0,1.29818957461873,0.870648686496336,3.0580330919339,0,0,0,0,0.860234595106124,0.347140501607594,0,0.419499436209906,0.550236083880135,0.835979866147242,0.516833518338658,0.35576626268671,0,3.62546385398232,1.52054421143703,2.4406205754817,0,0.81014194788176,0.17859945656816,0.673588117878509,0.337834441449967,1.53316637465883,0.949265659568129,3.48083313467774,0,0,0,0,0.759783069987479,0.132409180813219,0,0.354668382198357,1.68203280042692,0,1.2333377420858,0.311211035399766,0.134710672069688,0,0.605429710579726,2.30470369792,0.468642863667593,0,0,0,0.23486899728753,0.161872944368132,0,0,0.245668634623536,0,0,0,0,0,0.168336113954066,0.625592599359821,0,0,0,0,0.113432183160021,0,0,0,0.300091096084402,0,0,0,0.168776332241266,0.0974370051611986,0,0,0,0,0.10075209822764,0.169560592310488,0.193260853163297,0,0,77.8192245106819,60.6986338912402,62.5123412638009,42.812015721348,56.7721914470164,44.5272378072513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,1.47008711385542,0,0,0,4.85609409356116,1.10689594688802,12.3528823414938,0,0,0,0.370353780634118,0,0,2.88662684050547,17.2736303412864,1.6437217193015,3.75352764178792,5.09284063834272,7.99067439385313,0.790204397959275,1.71697232418975,0,3.51006397708857,1.63494278517601,0,0,0.141775097242386,0.0895585227028483,0,0,0,0,0.207328115540772,0.144119953416961,0.12624243342638,0.190493682876507,0.381988425558278,0,0,0,0,0,0.448524337381443,1.30788020649984,0.5867062865676,0,0,0,0,0,0.257207374262142,0,0.799266537048298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0,0,0.179060963239896,0,0.591092280605782,0.431255149719035,1.66845947163673,11.6883527142333,11.712586847186,11.5993321916654,12.3962036347418,8.29320377149112,0,0,0,0.12269149171914,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0.587403472388222,2.05886054286514,0,0,0.213455115606889,1.21251028578504,4.99306318531491,1.81434175997808,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,1.81289174387433,3.00759705454927,0.276242966807689,0,0,0.131124414959424,2.25599806453706,1.92538342761037,0.784349769176855,0,0.844413031143006,1.13733384070897,0,0,0,0.541892875087706,1.00337954770971,0,0,0,0,0,0.256450125116389,0.656029291399411,0.325378394664303,0,0.183138929636687,0.247528499761764,0,0,0,1.83674364755032,0.308097234229289,0.15350367472613,0.413509717453592,0.107420244868274,0.290033387828457,0.681813019328807,2.1367688555217,0.165284915360978,0,0.382838137483752,0.2023155617111,0,0,0.6970372701606,0,0,0.869932992075073,0,0,0.372158369359667,0,0.190630193923825,0.255897791311334,0,0,0,0,0,0.117812402345686,0.202182481573316,3.17020642346017,0,0,0.487426979262569,0,0.136499911407986,0,5.65040583101214,0,0,0,0,0,0.202910376962704,0.30982349809975,0.281695602532241,0,0,0,0,0,0,0,0.699869440489966,0,0.670302275535787,0,0.188287601553558,1.72202149068492,0,0,0.229723400206959,0,0,0,0.238231775457789,0.411362273086194,0,0,0,0.320472213382419,0,0,0.185803175125719,11.2529986121627,0,1.27541018183058,0,0,0,0.324621940274555,0,3.19528550646469,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,1.23087398947712,0,0,0,0,0,0.36408156524854,0,0.284136146806413,0,0.296964680832639,0,0,2.11004124615769,0,0,1.26675244876796,0.19924798825107,0,0.251932747854276,1.43176155503017,0,0,0,0,0,0,0,0,1.93866549219044,0.927680981618513,9.98068990005971,1.5625665665114,0,0.724999575434793,0,0,0.472775363535873,18.2713987817976,0.583209226766509,16.3207495237295,0.885741385813839,1.4471572635049,0,0.221158519862449,0,0.87754158861589,0,0.139423744278603,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.0884575645033392,0.611030144933625,0,0,0,2.29163852134302,0,1.40558667435203,0,0.586993856796269,0,0,1.20990716048664,11.6307649419586,0.063186579628488,1.80388103297391,0.829505531177977,0,0,0,0,0,0,0.173559738335131,0,0,0,0.51595809741485,0,0,0,0.0969890164884194,0,0.90392296312213,0,0,0.823040347426423,1.36885967914362,0,0.213452994739353,0,0.72045208577053,3.09248809647972,0,0,0.124252535565433,1.17847017308398,0.67952103036807,0.836822770498666,0,0,1.80126086612937,1.09524303113594,0,0,0,0,0,0,0,0,0,0.134366944973453,0,8.15471646692177,0,0,0,0,0,0,1.22583065500418,42.117324897835,46.7634084430595,44.4521161691228,0.6749216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| ||
|short_description=p3@MAD2L2 | |short_description=p3@MAD2L2 | ||
}} | }} |
Latest revision as of 09:53, 16 September 2015
Short description: | p3@MAD2L2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_MAD2L2_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000376655_5end |
EntrezGene: | MAD2L2 |
HGNC: | 6764 |
UniProt: | B1AK47 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 4.16e-17 | 25 |
neuronal stem cell | 3.24e-13 | 8 |
neurectodermal cell | 7.03e-11 | 59 |
neuron | 2.00e-10 | 6 |
neuroblast | 2.00e-10 | 6 |
electrically signaling cell | 2.00e-10 | 6 |
oligodendrocyte | 2.49e-10 | 7 |
macroglial cell | 2.49e-10 | 7 |
astrocyte | 2.49e-10 | 7 |
oligodendrocyte precursor cell | 2.49e-10 | 7 |
embryonic stem cell | 1.42e-09 | 5 |
neuron associated cell | 1.08e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 1.08e-07 | 17 |
ectodermal cell | 1.17e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.17e-16 | 81 |
nervous system | 2.96e-15 | 89 |
neurectoderm | 1.39e-12 | 86 |
pre-chordal neural plate | 1.00e-11 | 61 |
neural plate | 1.04e-11 | 82 |
presumptive neural plate | 1.04e-11 | 82 |
ectoderm-derived structure | 2.42e-10 | 171 |
ectoderm | 2.42e-10 | 171 |
presumptive ectoderm | 2.42e-10 | 171 |
brain | 7.35e-10 | 68 |
future brain | 7.35e-10 | 68 |
neural tube | 7.43e-09 | 56 |
neural rod | 7.43e-09 | 56 |
future spinal cord | 7.43e-09 | 56 |
neural keel | 7.43e-09 | 56 |
ecto-epithelium | 7.99e-09 | 104 |
telencephalon | 1.00e-08 | 34 |
regional part of nervous system | 1.07e-08 | 53 |
regional part of brain | 1.07e-08 | 53 |
cerebral hemisphere | 2.31e-08 | 32 |
regional part of forebrain | 2.97e-08 | 41 |
forebrain | 2.97e-08 | 41 |
anterior neural tube | 2.97e-08 | 41 |
future forebrain | 2.97e-08 | 41 |
regional part of telencephalon | 2.01e-07 | 32 |
atypical epithelium | 2.52e-07 | 4 |
organ system subdivision | 5.28e-07 | 223 |
brain grey matter | 9.03e-07 | 34 |
gray matter | 9.03e-07 | 34 |