FFCP PHASE1:Hg19::chr1:163044933..163044955,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:163044933..163044955,+
|short_description=p@chr1:163044933..163044955,+
|description=CAGE_peak_at_chr1:163044933..163044955,+
|association_with_transcript=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:163044933..163044955,+ | |||
|description=CAGE_peak_at_chr1:163044933..163044955,+ | |||
|id=chr1:163044933..163044955,+ | |||
|ontology_enrichment_celltype=CL:0000359!2.76e-15!32;CL:0000192!1.42e-14!42;CL:0000514!1.42e-14!42;CL:0000680!2.48e-12!57;CL:0000056!2.48e-12!57;CL:0000355!2.48e-12!57;CL:0000187!4.75e-11!54;CL:0000183!1.34e-09!59;CL:0000393!2.43e-09!60;CL:0000211!2.43e-09!60;CL:0002594!1.61e-08!4;CL:1000306!5.56e-08!4;CL:0002547!5.56e-08!4;CL:0000569!1.25e-07!4;CL:0000011!1.25e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002595;2.43e-20;5!CL:0002594;6.02e-12;4!CL:0000359;1.09e-11;32!CL:0000192;3.11e-08;43!CL:0002593;8.52e-07;2!CL:0002535;8.52e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002595,3.17e-20,5;CL:0000359,6.19e-12,32;CL:0002594,7.52e-12,4;CL:0000192,8.71e-09,43;CL:0000514,8.71e-09,43;CL:0002535,6.80e-07,2;CL:0002593,7.20e-07,2;CL:0000187,8.81e-07,55 | |||
|ontology_enrichment_development_v019=CL:0000514;3.11e-08;43 | |||
|ontology_enrichment_disease=DOID:2394!1.25e-09!14;DOID:0060084!2.78e-07!3;DOID:127!2.78e-07!3 | |||
|ontology_enrichment_disease_v019=DOID:0060084;3.69e-16;3!DOID:127;3.69e-16;3!DOID:2394;4.94e-13;14!DOID:0060072;2.33e-12;4!DOID:120;3.04e-10;27!DOID:193;1.57e-09;29 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,3.18e-16,3;DOID:127,3.18e-16,3;DOID:2394,6.76e-13,14;DOID:0060072,2.08e-12,4;DOID:120,3.43e-10,27;DOID:193,1.76e-09,29 | |||
|ontology_enrichment_uberon=UBERON:0001637!1.78e-16!42;UBERON:0003509!1.78e-16!42;UBERON:0004572!1.78e-16!42;UBERON:0004573!7.53e-13!33;UBERON:0004571!7.53e-13!33;UBERON:0000200!3.48e-11!6;UBERON:0001134!4.42e-11!61;UBERON:0002036!4.42e-11!61;UBERON:0003082!4.42e-11!61;UBERON:0004872!8.35e-11!84;UBERON:0001981!1.33e-10!60;UBERON:0007500!1.33e-10!60;UBERON:0004537!1.33e-10!60;UBERON:0006965!1.33e-10!60;UBERON:0002385!1.61e-10!63;UBERON:0001015!1.61e-10!63;UBERON:0000383!1.61e-10!63;UBERON:0002049!8.74e-10!79;UBERON:0007798!8.74e-10!79;UBERON:0004290!1.05e-09!70;UBERON:0002619!1.16e-09!22;UBERON:0000055!2.58e-09!69;UBERON:0001950!2.81e-09!20;UBERON:0004535!3.59e-09!110;UBERON:0000025!9.12e-09!194;UBERON:0000914!9.80e-09!83;UBERON:0002329!9.80e-09!83;UBERON:0003077!9.80e-09!83;UBERON:0003059!9.80e-09!83;UBERON:0007282!9.80e-09!83;UBERON:0009618!9.80e-09!83;UBERON:0007285!9.80e-09!83;UBERON:0001009!1.06e-08!113;UBERON:0001310!1.61e-08!4;UBERON:0000956!3.41e-08!25;UBERON:0000203!3.41e-08!25;UBERON:0001869!4.74e-08!32;UBERON:0000415!5.56e-08!4;UBERON:0007240!5.56e-08!4;UBERON:0005742!5.56e-08!4;UBERON:0005734!5.56e-08!4;UBERON:0004664!5.56e-08!4;UBERON:0004663!5.56e-08!4;UBERON:0000119!8.78e-08!312;UBERON:0001893!2.17e-07!34;UBERON:0000486!2.41e-07!82;UBERON:0000947!2.47e-07!21;UBERON:0010191!2.47e-07!21;UBERON:0000483!4.30e-07!309;UBERON:0004111!5.19e-07!241;UBERON:0003056!9.67e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0003834;2.43e-20;5!UBERON:0001533;2.43e-20;5!UBERON:0003513;1.02e-14;7!UBERON:0001310;6.02e-12;4!UBERON:0001637;2.42e-10;42!UBERON:0003509;2.42e-10;42!UBERON:0004572;2.42e-10;42!UBERON:0003134;4.86e-08;33!UBERON:0004573;8.67e-08;33!UBERON:0004571;8.67e-08;33!UBERON:0002771;4.55e-07;2!UBERON:0006955;8.52e-07;2!UBERON:0004801;8.52e-07;2!UBERON:0002456;8.52e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003834,3.17e-20,5;UBERON:0001533,3.17e-20,5;UBERON:0003513,1.24e-14,7;UBERON:0001637,4.18e-12,42;UBERON:0003509,4.18e-12,42;UBERON:0004572,4.18e-12,42;UBERON:0001310,7.52e-12,4;UBERON:0007500,1.96e-08,59;UBERON:0001981,1.96e-08,59;UBERON:0004537,1.96e-08,59;UBERON:0006965,1.96e-08,59;UBERON:0004573,3.25e-08,33;UBERON:0004571,3.25e-08,33;UBERON:0003134,1.65e-07,37;UBERON:0000474,1.65e-07,37;UBERON:0000055,3.14e-07,68;UBERON:0002771,4.56e-07,2;UBERON:0006955,6.80e-07,2;UBERON:0004801,6.80e-07,2;UBERON:0002456,7.20e-07,2;UBERON:0003100,9.24e-07,41 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0.602694528023977,1.46062018077475,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443458794925128,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,1.2663051166458,0.264818361626438,0.286836620748814,0.709336764396714,0.560677600142307,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0.204154171254893,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0.323292113637624,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.4400297149257,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59956785891291,0,0,0,1.4377491329495,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0.271265023699736,0.831883446123229,0.356857977594324,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0.482561763430822,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0.325378394664303,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0.127612712494584,0,0.464845549297286,0,0,0.616067160352178,0.532306030317022,0,0,0.429374660225974,0,0,0,0,0,0.318203247925937,0.78494864019923,0.179872457583315,0,0,0.404364963146632,0,0,0,1.46228093778771,0,0.272999822815972,0,0,1.10273068709225,0,1.31535265576129,0,0,0.811641507850816,1.239293992399,1.40847801266121,0.143411352204052,0,0.35667105148125,0.354761064070598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,1.51159648712566,0,0,0.933118762985422,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411125773940253,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,2.71499800876856,2.5926644736038,0.979762080328227,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0.886068179966986,3.17268288745104,0.1251909307065,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0.251567901752575,0,0.457680136793847,0.453692771289717,0.15543720058278,0.443565449968902,0.159296767163702,0,0,1.24411862352257,2.12673371646396,0,0.450772826991655,1.14241563650639,2.44122439922797,0.363697318405119,0.214821114084977,0,0.398095888698616,0,0.343395705182793,0,0,0,0,0,0,0.463044948647668,0,0.358177682162975,0,0,0.176689145945881,0.38582807654183,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0,0,0,0,0,0,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0.472763092328763,1.56215619722769,0.206686796501184,0.253663240775627,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328863867814245,0,0,0.078493092850514,0,0,0,0,0,0,0,0.23248285073625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0.126166424835079,0,0.126698501011437,0,0,0,0,0,0,0.829169439458779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 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|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0.602694528023977,1.46062018077475,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443458794925128,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,1.2663051166458,0.264818361626438,0.286836620748814,0.709336764396714,0.560677600142307,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0.161872944368132,0,0.204154171254893,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0.323292113637624,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.4400297149257,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59956785891291,0,0,0,1.4377491329495,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0.271265023699736,0.831883446123229,0.356857977594324,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0.482561763430822,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0.325378394664303,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0.127612712494584,0,0.464845549297286,0,0,0.616067160352178,0.532306030317022,0,0,0.429374660225974,0,0,0,0,0,0.318203247925937,0.78494864019923,0.179872457583315,0,0,0.404364963146632,0,0,0,1.46228093778771,0,0.272999822815972,0,0,1.10273068709225,0,1.31535265576129,0,0,0.811641507850816,1.239293992399,1.40847801266121,0.143411352204052,0,0.35667105148125,0.354761064070598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,1.51159648712566,0,0,0.933118762985422,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411125773940253,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,2.71499800876856,2.5926644736038,0.979762080328227,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0.886068179966986,3.17268288745104,0.1251909307065,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0.251567901752575,0,0.457680136793847,0.453692771289717,0.15543720058278,0.443565449968902,0.159296767163702,0,0,1.24411862352257,2.12673371646396,0,0.450772826991655,1.14241563650639,2.44122439922797,0.363697318405119,0.214821114084977,0,0.398095888698616,0,0.343395705182793,0,0,0,0,0,0,0.463044948647668,0,0.358177682162975,0,0,0.176689145945881,0.38582807654183,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0,0,0,0,0,0,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0.472763092328763,1.56215619722769,0.206686796501184,0.253663240775627,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328863867814245,0,0,0.078493092850514,0,0,0,0,0,0,0,0.23248285073625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0.126166424835079,0,0.126698501011437,0,0,0,0,0,0,0.829169439458779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:163044933..163044955,+ | |||
}} | }} |
Latest revision as of 23:46, 27 July 2015
Short description: | p@chr1:163044933..163044955, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:163044933..163044955, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the subclavian artery | 3.17e-20 | 5 |
vascular associated smooth muscle cell | 6.19e-12 | 32 |
smooth muscle cell of the umbilical artery | 7.52e-12 | 4 |
smooth muscle cell | 8.71e-09 | 43 |
smooth muscle myoblast | 8.71e-09 | 43 |
epithelial cell of cervix | 6.80e-07 | 2 |
smooth muscle cell of the internal thoracic artery | 7.20e-07 | 2 |
muscle cell | 8.81e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
thoracic segment blood vessel | 3.17e-20 | 5 |
subclavian artery | 3.17e-20 | 5 |
trunk blood vessel | 1.24e-14 | 7 |
artery | 4.18e-12 | 42 |
arterial blood vessel | 4.18e-12 | 42 |
arterial system | 4.18e-12 | 42 |
umbilical artery | 7.52e-12 | 4 |
epithelial tube open at both ends | 1.96e-08 | 59 |
blood vessel | 1.96e-08 | 59 |
blood vasculature | 1.96e-08 | 59 |
vascular cord | 1.96e-08 | 59 |
systemic artery | 3.25e-08 | 33 |
systemic arterial system | 3.25e-08 | 33 |
female reproductive organ | 1.65e-07 | 37 |
female reproductive system | 1.65e-07 | 37 |
vessel | 3.14e-07 | 68 |
middle temporal gyrus | 4.56e-07 | 2 |
uterine epithelium | 6.80e-07 | 2 |
cervix epithelium | 6.80e-07 | 2 |
internal thoracic artery | 7.20e-07 | 2 |
female organism | 9.24e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 3.18e-16 | 3 |
leiomyoma | 3.18e-16 | 3 |
ovarian cancer | 6.76e-13 | 14 |
benign neoplasm | 2.08e-12 | 4 |
female reproductive organ cancer | 3.43e-10 | 27 |
reproductive organ cancer | 1.76e-09 | 29 |