FFCP PHASE1:Hg19::chr12:52595451..52595478,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:52595451..52595478,+ | |||
|coexpression_cluster_id=C53 | |coexpression_cluster_id=C53 | ||
|description=CAGE_peak_at_chr12:52595451..52595478,+ | |description=CAGE_peak_at_chr12:52595451..52595478,+ | ||
|id=chr12:52595451..52595478,+ | |id=chr12:52595451..52595478,+ | ||
|ontology_enrichment_celltype=CL:0000243!6.20e-13!15;CL:0000125!6.20e-13!15;CL:0000030!6.20e-13!15;CL:0000339!6.20e-13!15;CL:0002586!1.33e-12!3;CL:0000095!1.48e-11!17;CL:0000123!1.48e-11!17;CL:0000149!1.12e-09!4;CL:0002319!4.43e-08!25 | |ontology_enrichment_celltype=CL:0000243!6.20e-13!15;CL:0000125!6.20e-13!15;CL:0000030!6.20e-13!15;CL:0000339!6.20e-13!15;CL:0002586!1.33e-12!3;CL:0000095!1.48e-11!17;CL:0000123!1.48e-11!17;CL:0000149!1.12e-09!4;CL:0002319!4.43e-08!25 | ||
|ontology_enrichment_celltype_v019=CL:0000243;7.91e-09;15!CL:0000125;7.91e-09;15!CL:0000095;5.35e-08;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000243,7.91e-09,15;CL:0000125,7.91e-09,15;CL:0000030,7.91e-09,15;CL:0000339,7.91e-09,15;CL:0000095,5.35e-08,17;CL:0000123,5.35e-08,17 | |||
|ontology_enrichment_development_v019=UBERON:0006238;4.25e-13;10!UBERON:0003056;2.31e-12;3!CL:0000339;7.91e-09;15 | |||
|ontology_enrichment_disease=DOID:3093!2.27e-18!11 | |ontology_enrichment_disease=DOID:3093!2.27e-18!11 | ||
|ontology_enrichment_disease_v019=DOID:3093;4.30e-12;11!DOID:5409;1.22e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,4.30e-12,11;DOID:5409,1.22e-09,4 | |||
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|ontology_enrichment_uberon_v019=UBERON:0002784;1.16e-73;4!UBERON:0001905;7.72e-66;2!UBERON:0002757;7.72e-66;2!UBERON:0010134;7.72e-66;2!UBERON:0005408;7.72e-66;2!UBERON:0001899;7.72e-66;2!UBERON:0001894;1.42e-42;7!UBERON:0003296;1.38e-33;4!UBERON:0010133;1.38e-33;4!UBERON:0001897;1.07e-17;2!UBERON:0010225;1.07e-17;2!UBERON:0000955;3.08e-08;68!UBERON:0000966;6.13e-08;5!UBERON:0005388;6.13e-08;5!UBERON:0001802;6.13e-08;5 | |||
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|short_description=p@chr12:52595451..52595478,+ | |short_description=p@chr12:52595451..52595478,+ | ||
}} | }} |
Latest revision as of 09:29, 24 July 2015
Short description: | p@chr12:52595451..52595478, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52595451..52595478, + |
Coexpression cluster: | C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 7.91e-09 | 15 |
glial cell | 7.91e-09 | 15 |
glioblast | 7.91e-09 | 15 |
glioblast (sensu Vertebrata) | 7.91e-09 | 15 |
neuron associated cell | 5.35e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 5.35e-08 | 17 |
Ontology term | p-value | n |
---|---|---|
regional part of diencephalon | 1.16e-73 | 4 |
pineal body | 7.73e-66 | 2 |
regional part of epithalamus | 7.73e-66 | 2 |
secretory circumventricular organ | 7.73e-66 | 2 |
circumventricular organ | 7.73e-66 | 2 |
epithalamus | 7.73e-66 | 2 |
diencephalon | 1.42e-42 | 7 |
future diencephalon | 1.42e-42 | 7 |
gland of diencephalon | 1.38e-33 | 4 |
neuroendocrine gland | 1.38e-33 | 4 |
dorsal plus ventral thalamus | 1.07e-17 | 2 |
thalamic complex | 1.07e-17 | 2 |
brain | 3.09e-12 | 68 |
future brain | 3.09e-12 | 68 |
central nervous system | 2.17e-10 | 81 |
nervous system | 2.05e-09 | 89 |
pre-chordal neural plate | 4.72e-09 | 61 |
regional part of forebrain | 8.93e-08 | 41 |
forebrain | 8.93e-08 | 41 |
anterior neural tube | 8.93e-08 | 41 |
future forebrain | 8.93e-08 | 41 |
neural plate | 6.96e-07 | 82 |
presumptive neural plate | 6.96e-07 | 82 |
retina | 8.02e-07 | 6 |
photoreceptor array | 8.02e-07 | 6 |
posterior segment of eyeball | 8.02e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 4.30e-12 | 11 |
lung small cell carcinoma | 1.22e-09 | 4 |