FFCP PHASE1:Hg19::chr5:52083991..52084021,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3672 | |EntrezGene=3672 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6134 | |HGNC=6134 | ||
|TSSclassifier=strong | |||
|UniProt=P56199 | |UniProt=P56199 | ||
|association_with_transcript=-114bp_to_NM_181501_5end | |association_with_transcript=-114bp_to_NM_181501_5end | ||
|cluster_id=chr5:52083991..52084021,+ | |||
|coexpression_cluster_id=C1277 | |coexpression_cluster_id=C1277 | ||
|description=CAGE_peak_3_at_ITGA1_5end | |description=CAGE_peak_3_at_ITGA1_5end | ||
|id=chr5:52083991..52084021,+ | |id=chr5:52083991..52084021,+ | ||
|ontology_enrichment_celltype=CL:0000136;9.96e-08;13 | |ontology_enrichment_celltype= | ||
| | |ontology_enrichment_celltype_v019=CL:0000136;9.96e-08;13 | ||
|ontology_enrichment_celltype_v019_2=CL:0000136,2.51e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0003104;4.70e-07;31!UBERON:0004161;9.66e-07;11 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0002107;2.57e-11;19!UBERON:0006925;2.57e-11;19!UBERON:0002423;1.69e-08;25!UBERON:0002368;2.13e-08;33!UBERON:0001737;1.23e-07;9!UBERON:0001557;1.23e-07;9 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!8.54e-15!347;UBERON:0000468!1.25e-14!659;UBERON:0007023!1.17e-13!115;UBERON:0000477!1.41e-12!286;UBERON:0000467!6.53e-11!625;UBERON:0000480!9.82e-11!626;UBERON:0000475!4.51e-10!365;UBERON:0003104!1.47e-09!238;UBERON:0009142!1.47e-09!238;UBERON:0000062!3.61e-09!511;UBERON:0002107!2.35e-08!19;UBERON:0006925!2.35e-08!19;UBERON:0008836!2.35e-08!19;UBERON:0001007!3.07e-08!155;UBERON:0001555!3.07e-08!155;UBERON:0007026!3.07e-08!155;UBERON:0004921!3.76e-08!129;UBERON:0004185!3.76e-08!129;UBERON:0005256!4.58e-08!143;UBERON:0009856!9.38e-08!26;UBERON:0002100!1.02e-07!216;UBERON:0009854!1.18e-07!23;UBERON:0002050!1.96e-07!605;UBERON:0005423!1.96e-07!605;UBERON:0000922!2.79e-07!612;UBERON:0007499!2.84e-07!25;UBERON:0000923!2.87e-07!604;UBERON:0005291!2.87e-07!604;UBERON:0006598!2.87e-07!604;UBERON:0002532!2.87e-07!604;UBERON:0008835!3.67e-07!22;UBERON:0003894!3.67e-07!22;UBERON:0001048!3.78e-07!168;UBERON:0002385!4.56e-07!63;UBERON:0001015!4.56e-07!63;UBERON:0000383!4.56e-07!63;UBERON:0004111!5.33e-07!241;UBERON:0004119!6.06e-07!169;UBERON:0000925!6.06e-07!169;UBERON:0006595!6.06e-07!169;UBERON:0000490!8.85e-07!138;UBERON:0005057!9.41e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;2.57e-11;19!UBERON:0006925;2.57e-11;19!UBERON:0002423;1.69e-08;25!UBERON:0002368;2.13e-08;33!UBERON:0001737;1.23e-07;9!UBERON:0001557;1.23e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,1.70e-14,145;UBERON:0001555,1.70e-14,145;UBERON:0007026,1.70e-14,145;UBERON:0004921,1.90e-14,118;UBERON:0004119,7.68e-12,160;UBERON:0000925,7.68e-12,160;UBERON:0006595,7.68e-12,160;UBERON:0002107,2.67e-11,19;UBERON:0006925,2.67e-11,19;UBERON:0008836,2.67e-11,19;UBERON:0001048,1.18e-10,160;UBERON:0009856,3.47e-10,26;UBERON:0009854,1.04e-09,23;UBERON:0007499,1.69e-09,25;UBERON:0008835,5.18e-09,22;UBERON:0003894,5.18e-09,22;UBERON:0003104,6.09e-09,160;UBERON:0009142,6.09e-09,160;UBERON:0001041,1.37e-08,87;UBERON:0009497,1.81e-08,25;UBERON:0000015,1.81e-08,25;UBERON:0002423,1.81e-08,25;UBERON:0006235,1.81e-08,25;UBERON:0004161,1.81e-08,25;UBERON:0005256,2.40e-08,122;UBERON:0002100,4.21e-08,199;UBERON:0002368,6.33e-08,35;UBERON:0007023,7.74e-08,114;UBERON:0001737,1.47e-07,9;UBERON:0003929,2.93e-07,54;UBERON:0011216,3.20e-07,223;UBERON:0002417,6.10e-07,60;UBERON:0000916,6.10e-07,60 | |||
|phase1_expression=13.2625216867506,4.92431204949261,9.72585388262201,7.00513088471913,5.81049422755474,0.872338524100369,40.5279805069297,0,0,1.22866968250754,0,0,0,0.247532705920093,0.331397375727916,3.36162573225888,1.20538905604795,0,0.975865597581014,0,0.204000691244253,0,0.572471974262113,0.136874425072884,2.13422487311165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0.145398238779565,0,0,0.232429036905685,0,0,0,0,0,0,1.29096936716765,0,0.188242339542605,0,0,0,0,0,0,0,0,0.290209238628584,0,0.622822248995575,0,0,0.434377689410233,1.81619850790011,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328875809207352,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,2.81297636055767,0.361439152384566,2.50668955317945,0.869079113764942,0,1.45990461090791,0.661743720148475,0.443458794925128,0,4.12584087817795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516833518338658,0.35576626268671,0,0,0.760272105718513,1.22031028774085,0,0,0.17859945656816,0,0,0,0,0,0,0,0,4.96971951695318,0.506522046658319,0.264818361626438,0.573673241497627,0.354668382198357,1.12135520028461,3.20246987189115,1.2333377420858,0.622422070799533,0.538842688278752,0.653847612453835,0.151357427644931,2.88087962239999,0,0,0,0,0,0,0,0.204154171254893,0,1.03325781175765,1.18800285728205,2.47266929278557,0.910161361938026,0,0.168336113954066,0,0.277064115484183,0.877955241761676,1.5324389789951,5.55880817954408,1.70148274740032,3.7671823494661,7.26095121983129,1.05965950579781,0.300091096084402,0.309157587715317,4.3798891807757,4.83903826462134,0.843881661206331,0.0974370051611986,1.00973509697646,3.77404584433427,0.161646056818812,6.39017266529906,2.82105875037393,0.508681776931463,0,0,0,0.121973706129595,0,0,0,0,0,6.25798129319264,4.5026865673502,0,1.39310378409594,0,4.8505788016336,2.86593973132773,4.82022059766964,6.50734439121124,4.13970943775572,3.08451804844426,4.44943316928543,3.13954344200554,5.00171304030308,0,4.20725321410337,1.2347220339942,1.47008711385542,35.4914097501126,52.0898424839142,41.9460833743797,0,0.245976877086227,4.80389868835872,0,0,0,0,0,0,0,0.34779121492523,4.93116515790451,0.144366447761074,0.462985512576611,1.90254152234598,0,0,0,0,0,0,0,0,0.179117045405697,0.290633938513962,0,0,0,0,0,0,0.063497894292169,0.381988425558278,0,0,0,0,0,0.224262168690721,0,0.51336800074665,13.5735301545667,0,2.535908257668,25.7959973087324,5.2003718455683,0.514414748524284,0,0,21.8756330296966,4.34097284313154,0.823240336780769,1.30294473717494,19.54655718084,2.37585561880029,2.41151501647669,4.35766729300147,0.899756920638513,0,0,0,4.31324739884849,5.7430967917057,0,1.30303176000821,0.410952645100767,0.716243852959582,0,0,0,0,0.254094624222463,2.60279707715243,0,0.167516265334349,1.27587750330633,0,0,0,0.613457458595699,0,0,9.56665963041713,1.07057393278297,1.41932173530541,1.28855556491985,0,0,0,0,0,0.0868836144680828,0,0.686286847621712,0,0,0,0,0,0,8.18755765801964,8.13348458426731,3.64858122762996,3.20347873139252,4.60536524160033,2.57366273829772,1.48418066444991,0.308419387605311,1.06537035187876,0.164254312027618,0,0.464841513839837,0.241718899183244,0,0,0.918515585316854,0.546273504020151,3.14698595902618,0,0.0770153371044148,0,0,0.211103257785751,0,0.170093705276516,0.863663664408557,0,0,0.501689773854853,0,0.831076008928724,0,0,0,0.256450125116389,0,0.325378394664303,15.6622337704538,0.183138929636687,0.41254749960294,0,0,0,0,0.154048617114644,0.15350367472613,0.551346289938122,0.751941714077915,0.290033387828457,0.340906509664404,0.0890320356467374,0.165284915360978,0.192190067365106,0.382838137483752,0.2023155617111,0,0,0.6970372701606,1.23213432070436,0,0.869932992075073,3.89180860118232,1.5743737541619,4.46590043231601,2.21465597303108,15.8223060956775,0.511795582622668,0.855877976067841,0,0.78494864019923,17.9872457583315,7.96157386234559,5.41937050790158,0.202182481573316,1.58510321173008,0,1.46290121726877,1.94970791705028,0,1.22849920267187,3.81794666275024,2.26016233240486,0,0,0.438450885253763,0,3.27947376023316,4.46402829317949,0.6196469961995,0.563391205064483,2.29458163526482,5.40369725572166,1.78335525740625,0,0.633322905892992,0.658589785919804,0,0.699869440489966,0,0,0,16.4751651359364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.12778627451629,0,0,11.3654458722565,0,0,0,0,0.422008249231538,3.33926115068718,0,0,11.357135330311,5.24939439509181,1.25966373927138,0.20453736500431,0,10.2643063928396,0.269605053441981,0,0,34.0319749447421,0,1.11136990144637,1.93866549219044,0.834912883456661,1.99613798001194,0,0,0.724999575434793,0,0,0,0,0,3.81974988853243,1.77148277162768,0.361789315876224,0,0.331737779793674,0.295547618953547,0.438770794307945,0.544692317594951,0.278847488557207,5.54041861227339,22.7884111694002,0,0,0,0.957003479195758,6.22863635132664,2.13213910407454,0,0,0,0,0,0,0,0,0,0.163232808159148,0.565412285735763,0,11.9431431729421,15.9223616106011,9.16545217400438,0,0,0,0.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|phase1_expression=13.2625216867506,4.92431204949261,9.72585388262201,7.00513088471913,5.81049422755474,0.872338524100369,40.5279805069297,0,0,1.22866968250754,0,0,0,0.247532705920093,0.331397375727916,3.36162573225888,1.20538905604795,0,0.975865597581014,0,0.204000691244253,0,0.572471974262113,0.136874425072884,2.13422487311165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0.145398238779565,0,0,0.232429036905685,0,0,0,0,0,0,1.29096936716765,0,0.188242339542605,0,0,0,0,0,0,0,0,0.290209238628584,0,0.622822248995575,0,0,0.434377689410233,1.81619850790011,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328875809207352,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,2.81297636055767,0.361439152384566,2.50668955317945,0.869079113764942,0,1.45990461090791,0.661743720148475,0.443458794925128,0,4.12584087817795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516833518338658,0.35576626268671,0,0,0.760272105718513,1.22031028774085,0,0,0.17859945656816,0,0,0,0,0,0,0,0,4.96971951695318,0.506522046658319,0.264818361626438,0.573673241497627,0.354668382198357,1.12135520028461,3.20246987189115,1.2333377420858,0.622422070799533,0.538842688278752,0.653847612453835,0.151357427644931,2.88087962239999,0,0,0,0,0,0,0,0.204154171254893,0,1.03325781175765,1.18800285728205,2.47266929278557,0.910161361938026,0,0.168336113954066,0,0.277064115484183,0.877955241761676,1.5324389789951,5.55880817954408,1.70148274740032,3.7671823494661,7.26095121983129,1.05965950579781,0.300091096084402,0.309157587715317,4.3798891807757,4.83903826462134,0.843881661206331,0.0974370051611986,1.00973509697646,3.77404584433427,0.161646056818812,6.39017266529906,2.82105875037393,0.508681776931463,0,0,0,0.121973706129595,0,0,0,0,0,6.25798129319264,4.5026865673502,0,1.39310378409594,0,4.8505788016336,2.86593973132773,4.82022059766964,6.50734439121124,4.13970943775572,3.08451804844426,4.44943316928543,3.13954344200554,5.00171304030308,0,4.20725321410337,1.2347220339942,1.47008711385542,35.4914097501126,52.0898424839142,41.9460833743797,0,0.245976877086227,4.80389868835872,0,0,0,0,0,0,0,0.34779121492523,4.93116515790451,0.144366447761074,0.462985512576611,1.90254152234598,0,0,0,0,0,0,0,0,0.179117045405697,0.290633938513962,0,0,0,0,0,0,0.063497894292169,0.381988425558278,0,0,0,0,0,0.224262168690721,0,0.51336800074665,13.5735301545667,0,2.535908257668,25.7959973087324,5.2003718455683,0.514414748524284,0,0,21.8756330296966,4.34097284313154,0.823240336780769,1.30294473717494,19.54655718084,2.37585561880029,2.41151501647669,4.35766729300147,0.899756920638513,0,0,0,4.31324739884849,5.7430967917057,0,1.30303176000821,0.410952645100767,0.716243852959582,0,0,0,0,0.254094624222463,2.60279707715243,0,0.167516265334349,1.27587750330633,0,0,0,0.613457458595699,0,0,9.56665963041713,1.07057393278297,1.41932173530541,1.28855556491985,0,0,0,0,0,0.0868836144680828,0,0.686286847621712,0,0,0,0,0,0,8.18755765801964,8.13348458426731,3.64858122762996,3.20347873139252,4.60536524160033,2.57366273829772,1.48418066444991,0.308419387605311,1.06537035187876,0.164254312027618,0,0.464841513839837,0.241718899183244,0,0,0.918515585316854,0.546273504020151,3.14698595902618,0,0.0770153371044148,0,0,0.211103257785751,0,0.170093705276516,0.863663664408557,0,0,0.501689773854853,0,0.831076008928724,0,0,0,0.256450125116389,0,0.325378394664303,15.6622337704538,0.183138929636687,0.41254749960294,0,0,0,0,0.154048617114644,0.15350367472613,0.551346289938122,0.751941714077915,0.290033387828457,0.340906509664404,0.0890320356467374,0.165284915360978,0.192190067365106,0.382838137483752,0.2023155617111,0,0,0.6970372701606,1.23213432070436,0,0.869932992075073,3.89180860118232,1.5743737541619,4.46590043231601,2.21465597303108,15.8223060956775,0.511795582622668,0.855877976067841,0,0.78494864019923,17.9872457583315,7.96157386234559,5.41937050790158,0.202182481573316,1.58510321173008,0,1.46290121726877,1.94970791705028,0,1.22849920267187,3.81794666275024,2.26016233240486,0,0,0.438450885253763,0,3.27947376023316,4.46402829317949,0.6196469961995,0.563391205064483,2.29458163526482,5.40369725572166,1.78335525740625,0,0.633322905892992,0.658589785919804,0,0.699869440489966,0,0,0,16.4751651359364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.12778627451629,0,0,11.3654458722565,0,0,0,0,0.422008249231538,3.33926115068718,0,0,11.357135330311,5.24939439509181,1.25966373927138,0.20453736500431,0,10.2643063928396,0.269605053441981,0,0,34.0319749447421,0,1.11136990144637,1.93866549219044,0.834912883456661,1.99613798001194,0,0,0.724999575434793,0,0,0,0,0,3.81974988853243,1.77148277162768,0.361789315876224,0,0.331737779793674,0.295547618953547,0.438770794307945,0.544692317594951,0.278847488557207,5.54041861227339,22.7884111694002,0,0,0,0.957003479195758,6.22863635132664,2.13213910407454,0,0,0,0,0,0,0,0,0,0.163232808159148,0.565412285735763,0,11.9431431729421,15.9223616106011,9.16545217400438,0,0,0,0.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| ||
|short_description=p3@ITGA1 | |short_description=p3@ITGA1 | ||
}} | }} |
Latest revision as of 02:20, 18 September 2015
Short description: | p3@ITGA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ITGA1_5end |
Coexpression cluster: | C1277_Hepatocyte_mature_mesenchymal_smooth_bladder_normal_cholangiocellular |
Association with transcript: | -114bp_to_NM_181501_5end |
EntrezGene: | ITGA1 |
HGNC: | 6134 |
UniProt: | P56199 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 2.51e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
digestive system | 1.70e-14 | 145 |
digestive tract | 1.70e-14 | 145 |
primitive gut | 1.70e-14 | 145 |
subdivision of digestive tract | 1.90e-14 | 118 |
endoderm-derived structure | 7.68e-12 | 160 |
endoderm | 7.68e-12 | 160 |
presumptive endoderm | 7.68e-12 | 160 |
liver | 2.67e-11 | 19 |
digestive gland | 2.67e-11 | 19 |
liver bud | 2.67e-11 | 19 |
primordium | 1.18e-10 | 160 |
sac | 3.47e-10 | 26 |
digestive tract diverticulum | 1.04e-09 | 23 |
epithelial sac | 1.69e-09 | 25 |
hepatic diverticulum | 5.18e-09 | 22 |
liver primordium | 5.18e-09 | 22 |
mesenchyme | 6.09e-09 | 160 |
entire embryonic mesenchyme | 6.09e-09 | 160 |
foregut | 1.37e-08 | 87 |
epithelium of foregut-midgut junction | 1.81e-08 | 25 |
anatomical boundary | 1.81e-08 | 25 |
hepatobiliary system | 1.81e-08 | 25 |
foregut-midgut junction | 1.81e-08 | 25 |
septum transversum | 1.81e-08 | 25 |
trunk mesenchyme | 2.40e-08 | 122 |
trunk | 4.21e-08 | 199 |
endocrine gland | 6.33e-08 | 35 |
adult organism | 7.74e-08 | 114 |
larynx | 1.47e-07 | 9 |
gut epithelium | 2.93e-07 | 54 |
organ system subdivision | 3.20e-07 | 223 |
abdominal segment of trunk | 6.10e-07 | 60 |
abdomen | 6.10e-07 | 60 |