FFCP PHASE1:Hg19::chr1:170632959..170632987,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5396 | |EntrezGene=5396 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9142 | |HGNC=9142 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-59bp_to_ENST00000239461_5end | |association_with_transcript=-59bp_to_ENST00000239461_5end | ||
|cluster_id=chr1:170632959..170632987,+ | |||
|coexpression_cluster_id=C851 | |coexpression_cluster_id=C851 | ||
|description=CAGE_peak_4_at_PRRX1_5end | |description=CAGE_peak_4_at_PRRX1_5end | ||
|id=chr1:170632959..170632987,+ | |id=chr1:170632959..170632987,+ | ||
|ontology_enrichment_celltype=CL:0002620;1.64e-12;23!CL:0000359;3.98e-10;32!CL:0000057;4.15e-10;73!CL:0000187;2.97e-09;55!CL:0002334;6.57e-09;12!CL:0000192;1.15e-08;43!CL:0000393;1.79e-07;61!CL:0000211;1.79e-07;61!CL:0002320;1.93e-07;188!CL:0002494;5.28e-07;16 | |ontology_enrichment_celltype=CL:0000055!4.41e-42!180;CL:0000057!5.43e-24!75;CL:0000680!7.68e-17!57;CL:0000056!7.68e-17!57;CL:0000355!7.68e-17!57;CL:0000187!9.89e-16!54;CL:0000183!1.00e-14!59;CL:0000393!1.14e-13!60;CL:0000211!1.14e-13!60;CL:0000192!1.16e-11!42;CL:0000514!1.16e-11!42;CL:0002620!5.04e-11!23;CL:0000359!1.73e-10!32;CL:0002334!4.74e-08!12 | ||
| | |ontology_enrichment_celltype_v019=CL:0002620;1.64e-12;23!CL:0000359;3.98e-10;32!CL:0000057;4.15e-10;73!CL:0000187;2.97e-09;55!CL:0002334;6.57e-09;12!CL:0000192;1.15e-08;43!CL:0000393;1.79e-07;61!CL:0000211;1.79e-07;61!CL:0002320;1.93e-07;188!CL:0002494;5.28e-07;16 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.38e-26,76;CL:0000680,2.37e-17,58;CL:0000056,2.37e-17,58;CL:0000355,2.37e-17,58;CL:0000187,4.12e-16,55;CL:0000393,1.89e-13,61;CL:0000211,1.89e-13,61;CL:0002620,1.81e-12,23;CL:0000192,1.40e-11,43;CL:0000514,1.40e-11,43;CL:0000359,1.23e-10,32;CL:0000048,2.91e-10,427;CL:0000723,1.99e-09,433;CL:0002334,6.09e-09,12;CL:0000034,2.20e-08,441;CL:0002494,5.51e-07,16 | |||
|ontology_enrichment_development_v019=CL:0000355;2.81e-09;58!CL:0000514;1.15e-08;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0002385;2.08e-11;31!UBERON:0001015;2.08e-11;31!UBERON:0000383;2.08e-11;31!UBERON:0007100;7.79e-10;25!UBERON:0002204;1.42e-09;70!UBERON:0000948;1.55e-09;22!UBERON:0002384;2.92e-09;198!UBERON:0001134;2.77e-08;16!UBERON:0002036;2.77e-08;16!UBERON:0001013;4.33e-08;14!UBERON:0004573;1.18e-07;33!UBERON:0004571;1.18e-07;33!UBERON:0002199;1.36e-07;46!UBERON:0002416;1.36e-07;46!UBERON:0002097;9.99e-07;41 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.16e-25!83;UBERON:0002329!2.16e-25!83;UBERON:0003077!2.16e-25!83;UBERON:0003059!2.16e-25!83;UBERON:0007282!2.16e-25!83;UBERON:0009618!2.16e-25!83;UBERON:0007285!2.16e-25!83;UBERON:0004290!4.91e-22!70;UBERON:0001134!1.10e-18!61;UBERON:0002036!1.10e-18!61;UBERON:0003082!1.10e-18!61;UBERON:0002385!1.51e-18!63;UBERON:0001015!1.51e-18!63;UBERON:0000383!1.51e-18!63;UBERON:0000486!3.97e-18!82;UBERON:0000475!1.79e-17!365;UBERON:0003102!3.27e-12!95;UBERON:0005256!3.87e-11!143;UBERON:0000468!1.92e-10!659;UBERON:0004872!3.15e-10!84;UBERON:0002199!7.64e-10!45;UBERON:0002416!7.64e-10!45;UBERON:0000481!9.73e-10!347;UBERON:0007100!1.70e-09!27;UBERON:0000948!3.45e-09!24;UBERON:0005498!3.45e-09!24;UBERON:0004140!3.45e-09!24;UBERON:0009881!3.45e-09!24;UBERON:0004141!3.45e-09!24;UBERON:0003084!3.45e-09!24;UBERON:0007005!3.45e-09!24;UBERON:0004139!3.45e-09!24;UBERON:0004291!3.45e-09!24;UBERON:0000479!4.02e-09!787;UBERON:0007023!2.50e-08!115;UBERON:0004573!3.72e-08!33;UBERON:0004571!3.72e-08!33;UBERON:0001637!4.50e-08!42;UBERON:0003509!4.50e-08!42;UBERON:0004572!4.50e-08!42;UBERON:0000119!4.60e-08!312;UBERON:0002097!9.16e-08!40;UBERON:0002100!1.79e-07!216;UBERON:0000483!1.79e-07!309;UBERON:0001013!1.96e-07!14;UBERON:0000467!4.57e-07!625;UBERON:0000480!6.29e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;2.08e-11;31!UBERON:0001015;2.08e-11;31!UBERON:0000383;2.08e-11;31!UBERON:0007100;7.79e-10;25!UBERON:0002204;1.42e-09;70!UBERON:0000948;1.55e-09;22!UBERON:0002384;2.92e-09;198!UBERON:0001134;2.77e-08;16!UBERON:0002036;2.77e-08;16!UBERON:0001013;4.33e-08;14!UBERON:0004573;1.18e-07;33!UBERON:0004571;1.18e-07;33!UBERON:0002199;1.36e-07;46!UBERON:0002416;1.36e-07;46!UBERON:0002097;9.99e-07;41 | |||
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| ||
|short_description=p4@PRRX1 | |short_description=p4@PRRX1 | ||
}} | }} |
Latest revision as of 14:18, 18 September 2015
Short description: | p4@PRRX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PRRX1_5end |
Coexpression cluster: | C851_Fibroblast_mesenchymal_Myoblast_normal_Olfactory_skeletal_Osteoblast |
Association with transcript: | -59bp_to_ENST00000239461_5end |
EntrezGene: | PRRX1 |
HGNC: | 9142 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.38e-26 | 76 |
muscle precursor cell | 2.37e-17 | 58 |
myoblast | 2.37e-17 | 58 |
multi-potent skeletal muscle stem cell | 2.37e-17 | 58 |
muscle cell | 4.12e-16 | 55 |
electrically responsive cell | 1.89e-13 | 61 |
electrically active cell | 1.89e-13 | 61 |
skin fibroblast | 1.81e-12 | 23 |
smooth muscle cell | 1.40e-11 | 43 |
smooth muscle myoblast | 1.40e-11 | 43 |
vascular associated smooth muscle cell | 1.23e-10 | 32 |
multi fate stem cell | 2.91e-10 | 427 |
somatic stem cell | 1.99e-09 | 433 |
preadipocyte | 6.09e-09 | 12 |
stem cell | 2.20e-08 | 441 |
cardiocyte | 5.51e-07 | 16 |