FFCP PHASE1:Hg19::chr1:152670815..152670829,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:152670815..152670829,+
|short_description=p1@LCE2A
|description=CAGE_peak_1_at_LCE2A_5end
|association_with_transcript=-10bp_to_ENST00000368779,NM_178428,u...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=353139 | |EntrezGene=353139 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29469 | |HGNC=29469 | ||
|TSSclassifier=strong | |||
|UniProt=Q5TA79 | |UniProt=Q5TA79 | ||
|association_with_transcript=-10bp_to_ENST00000368779,NM_178428,uc001faj.2_5end | |||
|cluster_id=chr1:152670815..152670829,+ | |||
|coexpression_cluster_id=C530 | |||
|description=CAGE_peak_1_at_LCE2A_5end | |||
|id=chr1:152670815..152670829,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.68e-16!180;CL:0002539!3.41e-15!10;CL:0002334!6.82e-14!12;CL:0000057!8.17e-11!75;CL:0000622!8.40e-10!5;CL:0002620!9.20e-10!23;CL:0000154!4.49e-08!6;CL:0000359!3.02e-07!32;CL:0000680!4.31e-07!57;CL:0000056!4.31e-07!57;CL:0000355!4.31e-07!57;CL:0000346!5.17e-07!3;CL:1000428!5.17e-07!3;CL:0002582!6.04e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002539;1.38e-24;10!CL:0000346;7.16e-13;3!CL:1000428;7.16e-13;3!CL:0002582;1.56e-12;3!CL:0002334;4.77e-11;12!CL:0002583;1.72e-08;2!CL:0000359;2.01e-08;32!CL:0000622;4.24e-08;5!CL:0002559;6.82e-08;5!CL:0000154;8.26e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002539,1.18e-24,10;CL:0000346,6.48e-13,3;CL:1000428,6.48e-13,3;CL:0002582,8.95e-13,3;CL:0002334,3.08e-11,12;CL:0002583,1.31e-08,2;CL:0000359,1.64e-08,32;CL:0000622,4.09e-08,5;CL:0002559,6.43e-08,5;CL:0000680,1.88e-07,58;CL:0000056,1.88e-07,58;CL:0000355,1.88e-07,58;CL:0000192,1.88e-07,43;CL:0000514,1.88e-07,43;CL:0000154,8.03e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0060072!3.59e-08!4;DOID:0060084!5.48e-07!3;DOID:127!5.48e-07!3 | |||
|ontology_enrichment_disease_v019=DOID:0060084;1.03e-12;3!DOID:127;1.03e-12;3!DOID:0060072;1.20e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,7.32e-13,3;DOID:127,7.32e-13,3;DOID:0060072,9.30e-10,4 | |||
|ontology_enrichment_uberon=UBERON:0002199!1.86e-26!45;UBERON:0002416!1.86e-26!45;UBERON:0002097!8.65e-24!40;UBERON:0003102!8.49e-22!95;UBERON:0004237!3.41e-15!10;UBERON:0004695!3.41e-15!10;UBERON:0002111!3.41e-15!10;UBERON:0004178!3.41e-15!10;UBERON:0001003!2.26e-12!14;UBERON:0007376!2.26e-12!14;UBERON:0007383!2.26e-12!14;UBERON:0001135!1.91e-11!15;UBERON:0004290!3.41e-11!70;UBERON:0000475!4.51e-10!365;UBERON:0000914!2.87e-09!83;UBERON:0002329!2.87e-09!83;UBERON:0003077!2.87e-09!83;UBERON:0003059!2.87e-09!83;UBERON:0007282!2.87e-09!83;UBERON:0009618!2.87e-09!83;UBERON:0007285!2.87e-09!83;UBERON:0000486!1.55e-08!82;UBERON:0000014!6.83e-08!4;UBERON:0002385!1.28e-07!63;UBERON:0001015!1.28e-07!63;UBERON:0000383!1.28e-07!63;UBERON:0000947!1.91e-07!21;UBERON:0010191!1.91e-07!21;UBERON:0002067!2.45e-07!9;UBERON:0004016!2.45e-07!9;UBERON:0010083!2.45e-07!9;UBERON:0001134!3.55e-07!61;UBERON:0002036!3.55e-07!61;UBERON:0003082!3.55e-07!61;UBERON:0000412!5.17e-07!3;UBERON:0001992!5.17e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0004237;1.38e-24;10!UBERON:0004695;1.38e-24;10!UBERON:0002111;1.38e-24;10!UBERON:0004178;1.38e-24;10!UBERON:0001135;5.98e-16;15!UBERON:0000412;7.16e-13;3!UBERON:0001992;7.16e-13;3!UBERON:0001003;1.28e-12;15!UBERON:0007376;1.28e-12;15!UBERON:0002385;4.98e-11;31!UBERON:0001015;4.98e-11;31!UBERON:0000383;4.98e-11;31!UBERON:0000947;5.16e-11;21!UBERON:0010191;5.16e-11;21!UBERON:0002097;8.90e-11;41!UBERON:0002199;1.21e-10;46!UBERON:0002416;1.21e-10;46!UBERON:0003102;2.35e-08;50!UBERON:0002073;6.82e-08;5!UBERON:0002072;1.87e-07;5!UBERON:0004573;2.49e-07;33!UBERON:0004571;2.49e-07;33!UBERON:0002067;2.93e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004237,1.18e-24,10;UBERON:0004695,1.18e-24,10;UBERON:0002111,1.18e-24,10;UBERON:0004178,1.18e-24,10;UBERON:0001135,5.41e-16,15;UBERON:0002199,5.77e-16,46;UBERON:0002416,5.77e-16,46;UBERON:0000412,6.48e-13,3;UBERON:0001992,6.48e-13,3;UBERON:0001003,1.31e-12,15;UBERON:0007376,1.31e-12,15;UBERON:0007383,1.31e-12,15;UBERON:0003102,1.40e-12,99;UBERON:0002097,1.62e-11,41;UBERON:0000947,4.82e-11,21;UBERON:0010191,4.82e-11,21;UBERON:0002329,1.07e-10,71;UBERON:0003059,1.07e-10,71;UBERON:0007282,1.07e-10,71;UBERON:0004290,1.07e-10,71;UBERON:0009618,1.07e-10,71;UBERON:0003077,1.69e-10,72;UBERON:0007285,1.69e-10,72;UBERON:0007524,2.64e-10,73;UBERON:0007503,2.04e-09,78;UBERON:0000486,1.23e-08,83;UBERON:0004573,3.32e-08,33;UBERON:0004571,3.32e-08,33;UBERON:0002073,6.43e-08,5;UBERON:0005086,6.43e-08,5;UBERON:0002072,1.60e-07,5;UBERON:0002067,2.98e-07,9;UBERON:0004016,2.98e-07,9;UBERON:0010083,2.98e-07,9;UBERON:0001134,8.08e-07,62;UBERON:0002036,8.08e-07,62;UBERON:0003082,8.08e-07,62 | |||
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| ||
|short_description=p1@LCE2A | |||
}} | }} |
Latest revision as of 03:41, 17 September 2015
Short description: | p1@LCE2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LCE2A_5end |
Coexpression cluster: | C530_papillary_salivary_skin_Smooth_leiomyoma_lung_Keratinocyte |
Association with transcript: | -10bp_to_ENST00000368779, NM_178428, uc001faj.2_5end |
EntrezGene: | LCE2A |
HGNC: | 29469 |
UniProt: | Q5TA79 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
aortic smooth muscle cell | 1.18e-24 | 10 |
hair follicle dermal papilla cell | 6.48e-13 | 3 |
stem cell of epidermis | 6.48e-13 | 3 |
visceral preadipocyte | 8.95e-13 | 3 |
preadipocyte | 3.08e-11 | 12 |
subcutaneous preadipocyte | 1.31e-08 | 2 |
vascular associated smooth muscle cell | 1.64e-08 | 32 |
acinar cell | 4.09e-08 | 5 |
hair follicle cell | 6.43e-08 | 5 |
muscle precursor cell | 1.88e-07 | 58 |
myoblast | 1.88e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.88e-07 | 58 |
smooth muscle cell | 1.88e-07 | 43 |
smooth muscle myoblast | 1.88e-07 | 43 |
protein secreting cell | 8.03e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 7.32e-13 | 3 |
leiomyoma | 7.32e-13 | 3 |
benign neoplasm | 9.30e-10 | 4 |