FFCP PHASE1:Hg19::chr5:98109355..98109380,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=285704 | |EntrezGene=285704 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26896 | |HGNC=26896 | ||
|TSSclassifier=strong | |||
|UniProt=Q6NW40 | |UniProt=Q6NW40 | ||
|association_with_transcript=16bp_to_ENST00000513185_5end | |association_with_transcript=16bp_to_ENST00000513185_5end | ||
|cluster_id=chr5:98109355..98109380,+ | |||
|description=CAGE_peak_1_at_RGMB_5end | |description=CAGE_peak_1_at_RGMB_5end | ||
|id=chr5:98109355..98109380,+ | |id=chr5:98109355..98109380,+ | ||
|ontology_enrichment_celltype=CL:0002620;4.13e-12;23!CL:0000359;1.13e-08;32!CL:0000192;1.85e-07;43 | |ontology_enrichment_celltype=CL:0000055!6.72e-22!180;CL:0000057!1.09e-13!75;CL:0002620!4.16e-12!23;CL:0000680!1.26e-10!57;CL:0000056!1.26e-10!57;CL:0000355!1.26e-10!57;CL:0000220!2.61e-10!246;CL:0002321!2.78e-10!248;CL:0000183!5.30e-10!59;CL:0000393!1.01e-09!60;CL:0000211!1.01e-09!60;CL:0000187!1.38e-09!54;CL:0000359!4.51e-09!32;CL:0000192!5.13e-09!42;CL:0000514!5.13e-09!42;CL:0000222!3.67e-08!119 | ||
| | |ontology_enrichment_celltype_v019=CL:0002620;4.13e-12;23!CL:0000359;1.13e-08;32!CL:0000192;1.85e-07;43 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.23e-14,76;CL:0002620,4.01e-12,23;CL:0000680,7.36e-11,58;CL:0000056,7.36e-11,58;CL:0000355,7.36e-11,58;CL:0002321,1.40e-10,250;CL:0000393,5.97e-10,61;CL:0000211,5.97e-10,61;CL:0000187,8.15e-10,55;CL:0000192,3.04e-09,43;CL:0000514,3.04e-09,43;CL:0000359,4.39e-09,32;CL:0000222,1.87e-08,121 | |||
|ontology_enrichment_development_v019=CL:0000514;1.85e-07;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0002097;4.00e-10;41!UBERON:0002199;3.60e-09;46!UBERON:0002416;3.60e-09;46!UBERON:0003102;3.87e-09;50!UBERON:0002385;2.88e-08;31!UBERON:0001015;2.88e-08;31!UBERON:0000383;2.88e-08;31!UBERON:0004573;1.91e-07;33!UBERON:0004571;1.91e-07;33!UBERON:0001637;5.94e-07;42!UBERON:0003509;5.94e-07;42!UBERON:0004572;5.94e-07;42 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!3.26e-29!365;UBERON:0000481!3.66e-21!347;UBERON:0003102!3.74e-19!95;UBERON:0000119!2.50e-18!312;UBERON:0000483!3.64e-18!309;UBERON:0000914!5.86e-18!83;UBERON:0002329!5.86e-18!83;UBERON:0003077!5.86e-18!83;UBERON:0003059!5.86e-18!83;UBERON:0007282!5.86e-18!83;UBERON:0009618!5.86e-18!83;UBERON:0007285!5.86e-18!83;UBERON:0000486!4.28e-16!82;UBERON:0004290!9.58e-16!70;UBERON:0000468!5.00e-14!659;UBERON:0004111!1.72e-13!241;UBERON:0002199!2.00e-13!45;UBERON:0002416!2.00e-13!45;UBERON:0000467!4.26e-13!625;UBERON:0000480!4.99e-13!626;UBERON:0005256!5.24e-13!143;UBERON:0002097!8.49e-13!40;UBERON:0002385!1.59e-12!63;UBERON:0001015!1.59e-12!63;UBERON:0000383!1.59e-12!63;UBERON:0002100!2.21e-12!216;UBERON:0001134!2.32e-12!61;UBERON:0002036!2.32e-12!61;UBERON:0003082!2.32e-12!61;UBERON:0000477!2.62e-12!286;UBERON:0003104!3.24e-11!238;UBERON:0009142!3.24e-11!238;UBERON:0004121!1.96e-10!169;UBERON:0001981!7.17e-10!60;UBERON:0007500!7.17e-10!60;UBERON:0004537!7.17e-10!60;UBERON:0006965!7.17e-10!60;UBERON:0000025!9.93e-10!194;UBERON:0000924!1.10e-09!173;UBERON:0006601!1.10e-09!173;UBERON:0001637!1.19e-09!42;UBERON:0003509!1.19e-09!42;UBERON:0004572!1.19e-09!42;UBERON:0000055!2.31e-09!69;UBERON:0000490!6.14e-09!138;UBERON:0002049!1.77e-08!79;UBERON:0007798!1.77e-08!79;UBERON:0004573!4.14e-08!33;UBERON:0004571!4.14e-08!33;UBERON:0000922!7.74e-08!612;UBERON:0000033!7.83e-08!123;UBERON:0000923!1.34e-07!604;UBERON:0005291!1.34e-07!604;UBERON:0006598!1.34e-07!604;UBERON:0002532!1.34e-07!604;UBERON:0002050!1.46e-07!605;UBERON:0005423!1.46e-07!605;UBERON:0000153!5.01e-07!129;UBERON:0007811!5.01e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;4.00e-10;41!UBERON:0002199;3.60e-09;46!UBERON:0002416;3.60e-09;46!UBERON:0003102;3.87e-09;50!UBERON:0002385;2.88e-08;31!UBERON:0001015;2.88e-08;31!UBERON:0000383;2.88e-08;31!UBERON:0004573;1.91e-07;33!UBERON:0004571;1.91e-07;33!UBERON:0001637;5.94e-07;42!UBERON:0003509;5.94e-07;42!UBERON:0004572;5.94e-07;42 | |||
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| ||
|short_description=p1@RGMB | |short_description=p1@RGMB | ||
}} | }} |
Latest revision as of 10:39, 19 September 2015
Short description: | p1@RGMB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RGMB_5end |
Coexpression cluster: | NA |
Association with transcript: | 16bp_to_ENST00000513185_5end |
EntrezGene: | RGMB |
HGNC: | 26896 |
UniProt: | Q6NW40 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.23e-14 | 76 |
skin fibroblast | 4.01e-12 | 23 |
muscle precursor cell | 7.36e-11 | 58 |
myoblast | 7.36e-11 | 58 |
multi-potent skeletal muscle stem cell | 7.36e-11 | 58 |
embryonic cell | 1.40e-10 | 250 |
electrically responsive cell | 5.97e-10 | 61 |
electrically active cell | 5.97e-10 | 61 |
muscle cell | 8.15e-10 | 55 |
smooth muscle cell | 3.04e-09 | 43 |
smooth muscle myoblast | 3.04e-09 | 43 |
vascular associated smooth muscle cell | 4.39e-09 | 32 |
mesodermal cell | 1.87e-08 | 121 |