FFCP PHASE1:Hg19::chr1:26737253..26737268,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79727 | |EntrezGene=79727 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15986 | |HGNC=15986 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H9Z2 | |UniProt=Q9H9Z2 | ||
|association_with_transcript=0bp_to_ENST00000326279,NM_024674,uc001bmi.1,uc001bmj.2_5end | |association_with_transcript=0bp_to_ENST00000326279,NM_024674,uc001bmi.1,uc001bmj.2_5end | ||
|cluster_id=chr1:26737253..26737268,+ | |||
|coexpression_cluster_id=C49 | |coexpression_cluster_id=C49 | ||
|description=CAGE_peak_2_at_LIN28A_5end | |description=CAGE_peak_2_at_LIN28A_5end | ||
|id=chr1:26737253..26737268,+ | |id=chr1:26737253..26737268,+ | ||
|ontology_enrichment_celltype=CL:0000039;1.01e-54;7!CL:0000586;1.01e-54;7!CL:0002322;1.05e-40;5!CL:0002321;1.62e-13;15!CL:0000540;6.01e-13;6!CL:0000404;6.01e-13;6!CL:0000148;7.51e-08;10 | |ontology_enrichment_celltype=CL:0000039!4.67e-34!7;CL:0000586!4.67e-34!7;CL:0002322!1.71e-25!5;CL:0000540!2.87e-08!6;CL:0000031!2.87e-08!6;CL:0000404!2.87e-08!6 | ||
| | |ontology_enrichment_celltype_v019=CL:0000039;1.01e-54;7!CL:0000586;1.01e-54;7!CL:0002322;1.05e-40;5!CL:0002321;1.62e-13;15!CL:0000540;6.01e-13;6!CL:0000404;6.01e-13;6!CL:0000148;7.51e-08;10 | ||
|ontology_enrichment_disease=DOID:3095;1.64e-34;22!DOID:2994;1.64e-34;22!DOID:1799;1.69e-09;1!DOID:10165;1.69e-09;1!DOID:1798;1.69e-09;1 | |ontology_enrichment_celltype_v019_2=CL:0000039,8.58e-55,7;CL:0000586,8.58e-55,7;CL:0002322,1.01e-40,5;CL:0000540,5.89e-13,6;CL:0000031,5.89e-13,6;CL:0000404,5.89e-13,6;CL:0000047,7.61e-10,8;CL:0000148,7.60e-08,10;CL:0000541,7.60e-08,10 | ||
|ontology_enrichment_uberon=UBERON:0000473;1.93e-16;8!UBERON:0003135;5.18e-12;11!UBERON:0000991;1.72e-09;21!UBERON:0000922;6.66e-08;49 | |ontology_enrichment_development_v019=UBERON:0009117;4.37e-20;10!UBERON:0005564;4.37e-20;10!CL:0000031;6.01e-13;6 | ||
|ontology_enrichment_disease=DOID:3095!9.45e-21!22;DOID:2994!9.45e-21!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.64e-34;22!DOID:2994;1.64e-34;22!DOID:1799;1.69e-09;1!DOID:10165;1.69e-09;1!DOID:1798;1.69e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.61e-34,22;DOID:2994,1.61e-34,22;DOID:1799,1.69e-09,1;DOID:10165,1.69e-09,1;DOID:1798,1.69e-09,1;DOID:0050687,4.32e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0000473!1.64e-21!8;UBERON:0003135!1.73e-15!11;UBERON:0000991!1.52e-10!21;UBERON:0009196!1.52e-10!21;UBERON:0009117!1.52e-10!21;UBERON:0005564!1.52e-10!21;UBERON:0004176!5.06e-10!22;UBERON:0003101!6.09e-10!22;UBERON:0000079!6.09e-10!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.93e-16;8!UBERON:0003135;5.18e-12;11!UBERON:0000991;1.72e-09;21!UBERON:0000922;6.66e-08;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.89e-16,8;UBERON:0003135,5.11e-12,11;UBERON:0000991,1.72e-09,21;UBERON:0009196,1.72e-09,21;UBERON:0009117,1.72e-09,21;UBERON:0005564,1.72e-09,21;UBERON:0004176,4.75e-09,22 | |||
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|short_description=p2@LIN28A | |short_description=p2@LIN28A | ||
}} | }} |
Latest revision as of 05:43, 17 September 2015
Short description: | p2@LIN28A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LIN28A_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000326279, NM_024674, uc001bmi.1, uc001bmj.2_5end |
EntrezGene: | LIN28A |
HGNC: | 15986 |
UniProt: | Q9H9Z2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 8.58e-55 | 7 |
germ cell | 8.58e-55 | 7 |
embryonic stem cell | 1.01e-40 | 5 |
neuron | 5.89e-13 | 6 |
neuroblast | 5.89e-13 | 6 |
electrically signaling cell | 5.89e-13 | 6 |
neuronal stem cell | 7.61e-10 | 8 |
melanocyte | 7.60e-08 | 10 |
melanoblast | 7.60e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
testis | 1.89e-16 | 8 |
male reproductive organ | 5.11e-12 | 11 |
gonad | 1.72e-09 | 21 |
indifferent external genitalia | 1.72e-09 | 21 |
indifferent gonad | 1.72e-09 | 21 |
gonad primordium | 1.72e-09 | 21 |
external genitalia | 4.75e-09 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.61e-34 | 22 |
germ cell cancer | 1.61e-34 | 22 |
islet cell tumor | 1.69e-09 | 1 |
endocrine pancreas cancer | 1.69e-09 | 1 |
pancreatic endocrine carcinoma | 1.69e-09 | 1 |
cell type cancer | 4.32e-07 | 143 |