FFCP PHASE1:Hg19::chr6:31544315..31544327,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7124 | |EntrezGene=7124 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=11892 | |HGNC=11892 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=23bp_to_uc003nuj.2_5end | |association_with_transcript=23bp_to_uc003nuj.2_5end | ||
|cluster_id=chr6:31544315..31544327,+ | |||
|coexpression_cluster_id=C0 | |coexpression_cluster_id=C0 | ||
|description=CAGE_peak_5_at_TNF_5end | |description=CAGE_peak_5_at_TNF_5end | ||
|id=chr6:31544315..31544327,+ | |id=chr6:31544315..31544327,+ | ||
|ontology_enrichment_celltype=CL:0000860;7.99e-76;33!CL:0002057;7.99e-76;33!CL:0000473;3.04e-57;39!CL:0000234;3.04e-57;39!CL:0000576;2.88e-33;48!CL:0000766;5.87e-29;69!CL:0002087;1.73e-14;104!CL:0000763;3.19e-13;100 | |ontology_enrichment_celltype=CL:0002057!1.86e-62!42;CL:0000860!1.17e-57!45;CL:0002087!3.78e-50!119;CL:0000557!4.16e-50!71;CL:0002031!6.34e-50!124;CL:0002009!1.01e-49!65;CL:0000738!9.65e-49!140;CL:0002194!1.89e-48!63;CL:0000576!1.89e-48!63;CL:0000040!1.89e-48!63;CL:0000559!1.89e-48!63;CL:0000839!5.66e-48!70;CL:0000766!4.47e-46!76;CL:0000037!1.12e-38!172;CL:0000566!1.12e-38!172;CL:0002032!1.74e-37!165;CL:0000837!1.74e-37!165;CL:0000988!8.96e-36!182;CL:0000763!1.97e-31!112;CL:0000049!1.97e-31!112;CL:0000134!1.68e-13!358;CL:0002320!5.73e-13!365;CL:0000219!4.26e-11!390;CL:0002393!1.77e-10!9;CL:0002397!1.77e-10!9;CL:0000048!7.06e-09!430;CL:0000723!1.45e-08!436;CL:0000034!3.67e-08!444 | ||
| | |ontology_enrichment_celltype_v019=CL:0000860;7.99e-76;33!CL:0002057;7.99e-76;33!CL:0000473;3.04e-57;39!CL:0000234;3.04e-57;39!CL:0000576;2.88e-33;48!CL:0000766;5.87e-29;69!CL:0002087;1.73e-14;104!CL:0000763;3.19e-13;100 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.37e-70,42;CL:0002057,1.37e-70,42;CL:0000473,1.13e-68,48;CL:0000234,1.13e-68,48;CL:0000557,1.22e-58,67;CL:0002009,1.80e-58,61;CL:0002194,1.95e-54,59;CL:0000576,1.95e-54,59;CL:0000040,1.95e-54,59;CL:0000559,1.95e-54,59;CL:0000839,7.91e-54,66;CL:0000766,3.42e-49,72;CL:0000763,1.35e-35,108;CL:0000049,1.35e-35,108;CL:0002031,8.50e-32,120;CL:0000738,9.17e-28,136;CL:0002087,6.88e-27,115;CL:0002032,4.74e-23,161;CL:0000837,4.74e-23,161;CL:0000037,5.58e-22,168;CL:0000988,1.00e-20,177;CL:0000134,6.59e-09,354;CL:0002320,1.13e-08,361;CL:0000219,7.44e-08,386;CL:0000048,7.57e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;1.55e-49;42!CL:0000049;1.37e-07;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.66e-43!80;UBERON:0002390!1.35e-39!102;UBERON:0003061!1.35e-39!102;UBERON:0001474!1.50e-39!86;UBERON:0002193!4.85e-35!112;UBERON:0004765!5.67e-34!101;UBERON:0001434!5.67e-34!101;UBERON:0002405!1.78e-28!115;UBERON:0002204!2.33e-16!167;UBERON:0003081!1.45e-14!216;UBERON:0002384!3.05e-12!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.74e-51,76;UBERON:0001474,1.41e-47,82;UBERON:0004765,3.66e-43,90;UBERON:0002405,1.06e-41,93;UBERON:0002390,1.84e-39,98;UBERON:0003061,1.84e-39,98;UBERON:0001434,1.26e-38,100;UBERON:0002193,1.35e-35,108;UBERON:0002204,3.97e-22,167;UBERON:0003081,1.01e-17,203;UBERON:0000926,2.18e-10,315;UBERON:0004120,2.18e-10,315;UBERON:0006603,2.18e-10,315;UBERON:0002384,2.34e-08,371 | |||
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| ||
|short_description=p5@TNF | |short_description=p5@TNF | ||
}} | }} |
Latest revision as of 21:27, 17 September 2015
Short description: | p5@TNF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_TNF_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 23bp_to_uc003nuj.2_5end |
EntrezGene: | TNF |
HGNC: | 11892 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.37e-70 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.37e-70 | 42 |
defensive cell | 1.13e-68 | 48 |
phagocyte | 1.13e-68 | 48 |
granulocyte monocyte progenitor cell | 1.22e-58 | 67 |
macrophage dendritic cell progenitor | 1.80e-58 | 61 |
monopoietic cell | 1.95e-54 | 59 |
monocyte | 1.95e-54 | 59 |
monoblast | 1.95e-54 | 59 |
promonocyte | 1.95e-54 | 59 |
myeloid lineage restricted progenitor cell | 7.91e-54 | 66 |
myeloid leukocyte | 3.42e-49 | 72 |
myeloid cell | 1.35e-35 | 108 |
common myeloid progenitor | 1.35e-35 | 108 |
hematopoietic lineage restricted progenitor cell | 8.50e-32 | 120 |
leukocyte | 9.17e-28 | 136 |
nongranular leukocyte | 6.88e-27 | 115 |
hematopoietic oligopotent progenitor cell | 4.74e-23 | 161 |
hematopoietic multipotent progenitor cell | 4.74e-23 | 161 |
hematopoietic stem cell | 5.58e-22 | 168 |
hematopoietic cell | 1.00e-20 | 177 |
mesenchymal cell | 6.59e-09 | 354 |
connective tissue cell | 1.13e-08 | 361 |
motile cell | 7.44e-08 | 386 |
multi fate stem cell | 7.57e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.74e-51 | 76 |
bone element | 1.41e-47 | 82 |
skeletal element | 3.66e-43 | 90 |
immune system | 1.06e-41 | 93 |
hematopoietic system | 1.84e-39 | 98 |
blood island | 1.84e-39 | 98 |
skeletal system | 1.26e-38 | 100 |
hemolymphoid system | 1.35e-35 | 108 |
musculoskeletal system | 3.97e-22 | 167 |
lateral plate mesoderm | 1.01e-17 | 203 |
mesoderm | 2.18e-10 | 315 |
mesoderm-derived structure | 2.18e-10 | 315 |
presumptive mesoderm | 2.18e-10 | 315 |
connective tissue | 2.34e-08 | 371 |