FFCP PHASE1:Hg19::chr12:53343573..53343584,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3856 | |EntrezGene=3856 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6446 | |HGNC=6446 | ||
|TSSclassifier=strong | |||
|UniProt=F8W1U3 | |UniProt=F8W1U3 | ||
|association_with_transcript=-13bp_to_ENST00000548998_5end | |association_with_transcript=-13bp_to_ENST00000548998_5end | ||
|cluster_id=chr12:53343573..53343584,- | |||
|coexpression_cluster_id=C3291 | |coexpression_cluster_id=C3291 | ||
|description=CAGE_peak_6_at_KRT8_5end | |description=CAGE_peak_6_at_KRT8_5end | ||
|id=chr12:53343573..53343584,- | |id=chr12:53343573..53343584,- | ||
|ontology_enrichment_celltype=CL:0000071;6.21e-13;18!CL:0002139;6.81e-13;24!CL:0000115;1.54e-10;36!CL:0002543;2.20e-08;6!CL:0002494;5.65e-08;16 | |ontology_enrichment_celltype=CL:0000066!1.20e-33!254;CL:0002321!4.17e-18!248;CL:0000220!7.12e-18!246;CL:0000222!3.49e-13!119;CL:0000548!2.39e-11!679;CL:0000004!2.39e-11!679;CL:0000255!2.39e-11!679;CL:0000223!6.21e-11!59;CL:0000012!7.84e-11!682;CL:0000071!2.49e-10!18;CL:0002546!2.49e-10!18;CL:0002139!5.32e-10!24;CL:0000076!1.66e-09!62;CL:0000115!1.78e-09!35;CL:0000213!5.13e-09!57;CL:0000215!5.13e-09!57;CL:0000183!2.24e-08!59;CL:0002078!1.78e-07!44;CL:0002076!2.51e-07!43 | ||
| | |ontology_enrichment_celltype_v019=CL:0000071;6.21e-13;18!CL:0002139;6.81e-13;24!CL:0000115;1.54e-10;36!CL:0002543;2.20e-08;6!CL:0002494;5.65e-08;16 | ||
|ontology_enrichment_disease= | |ontology_enrichment_celltype_v019_2=CL:0000066,1.61e-14,253;CL:0000115,1.91e-13,36;CL:0000071,4.09e-13,18;CL:0002546,4.09e-13,18;CL:0002139,5.33e-13,24;CL:0000222,1.24e-12,121;CL:0002078,1.64e-10,45;CL:0000213,9.76e-10,58;CL:0000215,9.76e-10,58;CL:0002321,1.96e-09,250;CL:0002543,2.08e-08,6;CL:0002494,3.65e-08,16 | ||
|ontology_enrichment_uberon=UBERON:0000487;4.03e-13;22!UBERON:0004638;6.21e-13;18!UBERON:0001986;6.21e-13;18!UBERON:0004852;6.21e-13;18!UBERON:0000490;2.10e-12;33!UBERON:0006914;5.70e-11;25!UBERON:0003914;2.17e-09;74!UBERON:0010260;1.10e-08;9!UBERON:0000025;6.70e-08;93!UBERON:0007500;2.53e-07;56!UBERON:0001981;2.53e-07;56!UBERON:0004537;2.53e-07;56!UBERON:0002049;4.84e-07;75!UBERON:0007798;4.84e-07;75!UBERON:0001638;7.28e-07;9!UBERON:0003920;7.28e-07;9!UBERON:0004582;7.28e-07;9 | |ontology_enrichment_development_v019=CL:0002546;6.21e-13;18 | ||
|ontology_enrichment_disease=DOID:305!5.20e-12!106;DOID:0050687!2.79e-10!143;DOID:162!1.17e-08!235;DOID:14566!3.15e-08!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!8.41e-23!118;UBERON:0000490!2.77e-20!138;UBERON:0001048!1.51e-15!168;UBERON:0004119!2.70e-15!169;UBERON:0000925!2.70e-15!169;UBERON:0006595!2.70e-15!169;UBERON:0002049!2.23e-14!79;UBERON:0007798!2.23e-14!79;UBERON:0003104!3.26e-14!238;UBERON:0009142!3.26e-14!238;UBERON:0000466!1.65e-13!126;UBERON:0004872!2.12e-13!84;UBERON:0001007!1.92e-12!155;UBERON:0001555!1.92e-12!155;UBERON:0007026!1.92e-12!155;UBERON:0000481!2.85e-12!347;UBERON:0004921!3.94e-12!129;UBERON:0004185!3.94e-12!129;UBERON:0000477!5.66e-12!286;UBERON:0005911!6.73e-12!82;UBERON:0002100!7.93e-12!216;UBERON:0005177!9.01e-12!107;UBERON:0001981!1.89e-11!60;UBERON:0007500!1.89e-11!60;UBERON:0004537!1.89e-11!60;UBERON:0006965!1.89e-11!60;UBERON:0000055!3.63e-11!69;UBERON:0000487!1.14e-10!22;UBERON:0004535!1.95e-10!110;UBERON:0001986!2.49e-10!18;UBERON:0004638!2.49e-10!18;UBERON:0004852!2.49e-10!18;UBERON:0004111!4.10e-10!241;UBERON:0000077!6.18e-10!130;UBERON:0000926!6.50e-10!448;UBERON:0004120!6.50e-10!448;UBERON:0006603!6.50e-10!448;UBERON:0000119!9.48e-10!312;UBERON:0005256!1.15e-09!143;UBERON:0001041!1.32e-09!98;UBERON:0001009!1.63e-09!113;UBERON:0000483!2.71e-09!309;UBERON:0007499!8.15e-09!25;UBERON:0009569!1.01e-08!113;UBERON:0000464!2.83e-08!104;UBERON:0006914!3.01e-08!25;UBERON:0003929!3.19e-08!54;UBERON:0009856!4.07e-08!26;UBERON:0005172!5.88e-08!55;UBERON:0005173!5.88e-08!55;UBERON:0000025!6.46e-08!194;UBERON:0008835!1.57e-07!22;UBERON:0003894!1.57e-07!22;UBERON:0009497!2.36e-07!25;UBERON:0000015!2.36e-07!25;UBERON:0002423!2.36e-07!25;UBERON:0006235!2.36e-07!25;UBERON:0004161!2.36e-07!25;UBERON:0000922!5.88e-07!612;UBERON:0009854!7.26e-07!23;UBERON:0002107!7.52e-07!19;UBERON:0006925!7.52e-07!19;UBERON:0008836!7.52e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0000487;4.03e-13;22!UBERON:0004638;6.21e-13;18!UBERON:0001986;6.21e-13;18!UBERON:0004852;6.21e-13;18!UBERON:0000490;2.10e-12;33!UBERON:0006914;5.70e-11;25!UBERON:0003914;2.17e-09;74!UBERON:0010260;1.10e-08;9!UBERON:0000025;6.70e-08;93!UBERON:0007500;2.53e-07;56!UBERON:0001981;2.53e-07;56!UBERON:0004537;2.53e-07;56!UBERON:0002049;4.84e-07;75!UBERON:0007798;4.84e-07;75!UBERON:0001638;7.28e-07;9!UBERON:0003920;7.28e-07;9!UBERON:0004582;7.28e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,3.50e-23,117;UBERON:0002049,1.28e-14,78;UBERON:0007798,1.28e-14,78;UBERON:0004872,2.16e-14,83;UBERON:0000490,2.92e-14,148;UBERON:0004535,1.44e-13,109;UBERON:0000487,2.17e-13,22;UBERON:0004638,4.09e-13,18;UBERON:0001986,4.09e-13,18;UBERON:0004852,4.09e-13,18;UBERON:0001009,7.43e-13,112;UBERON:0000025,2.88e-12,192;UBERON:0007500,6.72e-12,59;UBERON:0001981,6.72e-12,59;UBERON:0004537,6.72e-12,59;UBERON:0006965,6.72e-12,59;UBERON:0000055,9.77e-12,68;UBERON:0006914,3.37e-11,25;UBERON:0000483,1.35e-10,306;UBERON:0000119,2.77e-10,309;UBERON:0010260,7.32e-09,9;UBERON:0004111,1.17e-08,240;UBERON:0001048,7.08e-08,160;UBERON:0005177,3.32e-07,101;UBERON:0002100,5.16e-07,199;UBERON:0001638,8.00e-07,9;UBERON:0003920,8.00e-07,9;UBERON:0004582,8.00e-07,9 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0.737201809504527,1.39560233594486,0.218441372130172,0.263766978228454,0.74259811776028,0.662794751455832,2.6893005858071,1.20538905604795,0.730310090387373,1.95173119516203,0.123121058076788,1.83600622119828,0.626909442956176,0,0,0.125542639594803,0,0,0,0,0,0,0.919421224478927,1.204823675113,1.84877005083394,0,0,0.293600439334847,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,2.01210257911091,1.66221330396589,0,0,0,0,0,0.756278537312543,2.88248216701333,2.19586964232815,0.0654895377488563,1.09288586487763,1.11235332835329,0,0,0,0,0,0,0.993812036833525,1.72046919021225,2.42998351125316,2.82653970962005,2.09749718104953,0.550236083880135,0.417989933073621,0.775250277507987,0,1.00416183829401,4.02829317109147,1.52054421143703,4.39311703586705,0.367663080345869,2.43042584364528,1.7859945656816,2.02076435363553,1.35133776579987,3.06633274931766,2.84779697870439,2.19842092716489,0,0,0.436094052142534,0.496971951695318,0.633152558322899,0.529636723252875,0.286836620748814,0.709336764396714,1.12135520028461,4.2699598291882,4.19334832309172,0.311211035399766,1.88594940897563,1.79808093424805,1.36221684880438,2.30470369792,0.234321431833797,0,0,0,0.117434498643765,0,0,0.408308342509787,0.245668634623536,0.103325781175765,0,0,0,0.718618141816238,0,0.125118519871964,0,0,0,0,0.907457465280168,0,0.213557388818567,0.211931901159562,0,0,0.257640540045629,0.18611685633159,0,0.0974370051611986,0,0.0920498986422993,0.323292113637624,0,0,0.847802961552438,0.386521706326594,0,0.573609190778008,0.487894824518382,0.265059536642971,0.580969714347592,0.518305275076852,0.756962552626885,0,0,0,1.38134921352481,0,0,0.591534000199219,0.168584690078102,0.482022059766964,0.220587945464788,0.435758888184812,0,0.539325232640658,0.196221465125346,1.15424147083917,2.21446636387394,2.80483547606892,4.115740113314,5.88034845542168,0,0.982827216677626,0.590789906681404,0,0.245976877086227,1.88724591328378,0.109750285408626,0,0,1.29623823221941,0.325808305310325,0,1.44331342025273,0.115930404975077,2.23076519048061,1.29929802984966,0,1.90254152234598,1.58040879591855,0,0,0,0.148631162288728,0.93733833986777,0.335964256397719,0.425325291727159,0.895585227028483,0.871901815541886,0,0,0,0,0,0,0,0,0,0,0,0,0,0.897048674762886,0.87192013766656,0.2933531432838,1.03417372606222,0,0,1.86156681609409,2.08014873822732,0.771622122786426,0,0.532844358032199,4.57529579706072,2.71310802695722,1.64648067356154,0.65147236858747,4.26470338491055,1.58390374586686,1.20575750823834,0,0.499864955910285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,2.00068208423871,0.813795071099207,0.415941723061614,0,0.315404830067869,0,0,0,0,0.664225598535437,1.10621501125022,0.0868836144680828,2.34961388955289,1.02943027143257,0,0,0,0.606255142892519,1.66435439510497,1.5119514666484,0,0,0,0.256278298511402,0,0.160853921143607,1.48418066444991,0.462629081407967,0.355123450626254,0.164254312027618,0.519254429183621,0.116210378459959,0.120859449591622,0.601519410909855,0.736647911487171,0.459257792658427,0.728364672026868,0.655622074797121,0.902399225814824,0.924184045252977,2.35304930753057,2.92278449306521,1.79437769117889,0,2.55140557914773,0.215915916102139,3.08454505380579,1.89662506280697,3.01013864312912,0.509752546090077,0,1.79099803777743,0,0,0.256450125116389,1.64007322849853,3.90454073597164,0.103041011647722,0,0.165018999841176,0,0,0,0.290012154876366,0,0.15350367472613,0.275673144969061,0.214840489736547,0,0.170453254832202,0,0.826424576804891,0.960950336825531,0.255225424989168,0.50578890427775,0,0,0,0.616067160352178,2.12922412126809,0,0,0,0.372158369359667,1.2655176988749,0.190630193923825,0.767693373934002,0,0,0.78494864019923,0.539617372749944,1.37268514868027,1.29593642580255,1.2130948894399,1.58510321173008,1.68503382495592,2.43816869544795,0,1.05650146756755,0.9554993798559,0.848432591722276,0,0.551365343546124,0.66343897524122,0,0.578775534266688,1.9676842561399,1.82619339266434,4.02770547529675,5.63391205064483,0.717056761020258,1.27723753317057,1.78335525740625,0.354761064070598,0,0,0,0.699869440489966,0.865999014529609,1.34060455107157,0,0.470719003883896,0.86101074534246,0,2.21715076768338,2.06751060186264,0,0,0,0,0,0,0,0,1.06824071127473,0,0,0,0,0,0,0,0,1.05836791361941,0,0,0,0,0,1.86220955581764,0,0,0,0,0,0,0,0,0.835218521685727,0,0.270455678475983,0.99921590399346,0,0.18714054040822,0.146508179271894,0,0.222886768554957,1.98895302764489,0,0.593929361665277,0.921482106297696,0,0,5.56543525114529,0,0.63337622438398,0.19924798825107,0,0,0.715880777515084,0,0,0.898683511473268,0.537063524026827,0,0.197286811273867,0,3.33410970433911,0,0,0,2.3438498497671,0.349839999984783,0,0.682760689712998,2.03402920234213,0,0,0,0,0,0,0,0,0,0,2.28770773389879,0.557694977114413,0,0.91153644677601,0,0,0,0,0,0,0,1.2558420511602,0,0.22559566061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| ||
|short_description=p6@KRT8 | |short_description=p6@KRT8 | ||
}} | }} |
Latest revision as of 01:12, 19 September 2015
Short description: | p6@KRT8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_KRT8_5end |
Coexpression cluster: | C3291_large_Fibroblast_Mesenchymal_anaplastic_Renal_cervical_Pericytes |
Association with transcript: | -13bp_to_ENST00000548998_5end |
EntrezGene: | KRT8 |
HGNC: | 6446 |
UniProt: | F8W1U3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.61e-14 | 253 |
endothelial cell | 1.91e-13 | 36 |
blood vessel endothelial cell | 4.09e-13 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.09e-13 | 18 |
endothelial cell of vascular tree | 5.33e-13 | 24 |
mesodermal cell | 1.24e-12 | 121 |
meso-epithelial cell | 1.64e-10 | 45 |
lining cell | 9.76e-10 | 58 |
barrier cell | 9.76e-10 | 58 |
embryonic cell | 1.96e-09 | 250 |
vein endothelial cell | 2.08e-08 | 6 |
cardiocyte | 3.65e-08 | 16 |
Ontology term | p-value | n |
---|---|---|
epithelial tube | 3.50e-23 | 117 |
vasculature | 1.28e-14 | 78 |
vascular system | 1.28e-14 | 78 |
splanchnic layer of lateral plate mesoderm | 2.16e-14 | 83 |
unilaminar epithelium | 2.92e-14 | 148 |
cardiovascular system | 1.44e-13 | 109 |
simple squamous epithelium | 2.17e-13 | 22 |
blood vessel endothelium | 4.09e-13 | 18 |
endothelium | 4.09e-13 | 18 |
cardiovascular system endothelium | 4.09e-13 | 18 |
circulatory system | 7.43e-13 | 112 |
tube | 2.88e-12 | 192 |
epithelial tube open at both ends | 6.72e-12 | 59 |
blood vessel | 6.72e-12 | 59 |
blood vasculature | 6.72e-12 | 59 |
vascular cord | 6.72e-12 | 59 |
vessel | 9.77e-12 | 68 |
squamous epithelium | 3.37e-11 | 25 |
epithelium | 1.35e-10 | 306 |
cell layer | 2.77e-10 | 309 |
umbilical blood vessel | 7.32e-09 | 9 |
anatomical conduit | 1.17e-08 | 240 |
primordium | 7.08e-08 | 160 |
trunk region element | 3.32e-07 | 101 |
trunk | 5.16e-07 | 199 |
vein | 8.00e-07 | 9 |
venous blood vessel | 8.00e-07 | 9 |
venous system | 8.00e-07 | 9 |