FFCP PHASE1:Hg19::chr13:78109804..78109815,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8796 | |EntrezGene=8796 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10573 | |HGNC=10573 | ||
|TSSclassifier=strong | |||
|UniProt=F8W725,F5H651,B7Z797,O95171 | |UniProt=F8W725,F5H651,B7Z797,O95171 | ||
|association_with_transcript=0bp_to_ENST00000348770,ENST00000535157,NM_001160706,NM_003843,NM_144777,uc001vki.2,uc001vkj.2,uc010thx.1_5end | |association_with_transcript=0bp_to_ENST00000348770,ENST00000535157,NM_001160706,NM_003843,NM_144777,uc001vki.2,uc001vkj.2,uc010thx.1_5end | ||
|cluster_id=chr13:78109804..78109815,+ | |||
|description=CAGE_peak_5_at_SCEL_5end | |description=CAGE_peak_5_at_SCEL_5end | ||
|id=chr13:78109804..78109815,+ | |id=chr13:78109804..78109815,+ | ||
|ontology_enrichment_celltype=CL:0000349;1.72e-12;19!CL:0002537;2.10e-10;5!CL:0002149;2.91e-08;6!CL:0002255;2.91e-08;6!CL:0002577;1.36e-07;3!CL:0000342;7.35e-07;1!CL:0002565;7.35e-07;1 | |ontology_enrichment_celltype=CL:0002076!4.34e-22!43;CL:0000066!2.07e-21!254;CL:0000223!1.45e-15!59;CL:0002251!7.69e-10!21;CL:0000349!6.69e-07!3;CL:0002577!6.69e-07!3 | ||
| | |ontology_enrichment_celltype_v019=CL:0000349;1.72e-12;19!CL:0002537;2.10e-10;5!CL:0002149;2.91e-08;6!CL:0002255;2.91e-08;6!CL:0002577;1.36e-07;3!CL:0000342;7.35e-07;1!CL:0002565;7.35e-07;1 | ||
|ontology_enrichment_disease=DOID:4468;5.29e-12;2!DOID:3001;2.91e-08;6!DOID:299;4.97e-07;25!DOID:178;8.90e-07;1!DOID:326;8.90e-07;1!DOID:3978;8.90e-07;1!DOID:3394;8.90e-07;1!DOID:5844;8.90e-07;1 | |ontology_enrichment_celltype_v019_2=CL:0000349,1.97e-12,19;CL:0002537,1.95e-10,5;CL:0002149,3.10e-08,6;CL:0002255,3.10e-08,6;CL:0002577,1.32e-07,3;CL:0000342,7.35e-07,1;CL:0002565,7.35e-07,1 | ||
|ontology_enrichment_uberon=UBERON:0005631;5.31e-13;10!UBERON:0000158;5.31e-13;10!UBERON:0000478;1.10e-12;24!UBERON:0000305;2.07e-12;7!UBERON:0006562;5.79e-11;2!UBERON:0002294;3.48e-07;7!UBERON:0001173;3.48e-07;7!UBERON:0002171;6.23e-07;1!UBERON:0006518;6.23e-07;1!UBERON:0008949;6.23e-07;1!UBERON:0000101;6.23e-07;1!UBERON:0002167;6.23e-07;1!UBERON:0002506;7.35e-07;1!UBERON:0001769;7.35e-07;1 | |ontology_enrichment_development_v019=UBERON:0000358;8.90e-07;1!UBERON:0009143;8.90e-07;1 | ||
|ontology_enrichment_disease=DOID:305!1.14e-16!106;DOID:1749!1.08e-11!14;DOID:0050687!1.91e-10!143;DOID:299!3.23e-07!25;DOID:1324!5.18e-07!15 | |||
|ontology_enrichment_disease_v019=DOID:4468;5.29e-12;2!DOID:3001;2.91e-08;6!DOID:299;4.97e-07;25!DOID:178;8.90e-07;1!DOID:326;8.90e-07;1!DOID:3978;8.90e-07;1!DOID:3394;8.90e-07;1!DOID:5844;8.90e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,5.45e-12,2;DOID:305,5.87e-09,106;DOID:3001,3.10e-08,6;DOID:299,5.54e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.91e-19!169;UBERON:0000925!1.91e-19!169;UBERON:0006595!1.91e-19!169;UBERON:0005631!1.17e-15!14;UBERON:0000158!1.17e-15!14;UBERON:0001004!2.47e-15!72;UBERON:0000065!3.22e-14!53;UBERON:0001007!1.18e-13!155;UBERON:0001555!1.18e-13!155;UBERON:0007026!1.18e-13!155;UBERON:0000077!2.84e-13!130;UBERON:0000161!7.35e-13!35;UBERON:0005911!1.88e-12!82;UBERON:0005153!3.43e-12!37;UBERON:0000344!3.03e-11!12;UBERON:0005178!1.03e-10!34;UBERON:0002224!1.03e-10!34;UBERON:0002048!2.02e-10!22;UBERON:0000117!2.02e-10!22;UBERON:0000171!2.02e-10!22;UBERON:0000170!2.02e-10!22;UBERON:0005597!2.02e-10!22;UBERON:0000118!2.02e-10!22;UBERON:0005181!2.76e-10!35;UBERON:0003124!8.62e-10!7;UBERON:0004921!9.66e-10!129;UBERON:0004185!9.66e-10!129;UBERON:0000478!1.01e-09!24;UBERON:0003729!3.22e-09!5;UBERON:0000064!3.86e-09!219;UBERON:0003975!1.40e-08!22;UBERON:0005157!1.66e-08!51;UBERON:0004923!1.79e-08!57;UBERON:0004807!2.32e-08!28;UBERON:0001987!2.62e-08!4;UBERON:0004340!2.62e-08!4;UBERON:0003343!8.08e-08!4;UBERON:0004785!8.08e-08!4;UBERON:0008947!8.64e-08!38;UBERON:0003258!8.64e-08!38;UBERON:0000305!1.41e-07!7;UBERON:0000072!1.45e-07!46;UBERON:0000995!1.74e-07!21;UBERON:0000166!2.88e-07!21;UBERON:0004175!3.03e-07!25;UBERON:0000162!3.60e-07!14;UBERON:0001353!3.60e-07!14;UBERON:0000163!3.60e-07!14;UBERON:0006866!3.60e-07!14;UBERON:0000164!3.60e-07!14;UBERON:0000931!3.60e-07!14;UBERON:0002294!4.40e-07!7;UBERON:0001173!4.40e-07!7;UBERON:0004912!4.40e-07!7;UBERON:0001041!4.79e-07!98;UBERON:0005795!4.80e-07!22;UBERON:0001723!7.53e-07!3;UBERON:0001033!7.53e-07!3;UBERON:0010056!7.53e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;5.31e-13;10!UBERON:0000158;5.31e-13;10!UBERON:0000478;1.10e-12;24!UBERON:0000305;2.07e-12;7!UBERON:0006562;5.79e-11;2!UBERON:0002294;3.48e-07;7!UBERON:0001173;3.48e-07;7!UBERON:0002171;6.23e-07;1!UBERON:0006518;6.23e-07;1!UBERON:0008949;6.23e-07;1!UBERON:0000101;6.23e-07;1!UBERON:0002167;6.23e-07;1!UBERON:0002506;7.35e-07;1!UBERON:0001769;7.35e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.44e-17,14;UBERON:0000158,3.44e-17,14;UBERON:0000478,1.23e-12,24;UBERON:0000305,2.51e-12,7;UBERON:0004871,8.49e-11,8;UBERON:0004119,2.45e-07,160;UBERON:0000925,2.45e-07,160;UBERON:0006595,2.45e-07,160;UBERON:0003124,6.06e-07,7;UBERON:0002171,6.23e-07,1;UBERON:0006518,6.23e-07,1;UBERON:0008949,6.23e-07,1;UBERON:0000101,6.23e-07,1;UBERON:0002167,6.23e-07,1;UBERON:0002506,7.35e-07,1;UBERON:0001769,7.35e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0.697801167972428,0.655324116390517,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.527008714158756,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0.272746120590835,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,5.66173773985134,0.439001141634502,0,0.100528972411631,0.370353780634118,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.283550194484773,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.909382714338778,1.66435439510497,1.20956117331872,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.200506470303285,1.56537681191024,0,0,0,0,0.231046011313244,0,0,0.633309773357254,0,0,0,0,0,0,0.509752546090077,0,0,0,0,0,0,0,1.95777922130672,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15699440752685,0.192190067365106,0.510450849978337,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,1.41215701165169,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,7.87856799634377,2.96964680832639,6.75753544618311,0,0,0,0,0,0,0,0,0,0,0,0.629078458031288,1.25314822272926,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.1137934482855,4.57656570526979,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0.83654246567162,0.153900517007594,0,0,0,0,1.27600463892768,0,0.533034776018635,0,0,0,0,0,0,0,0,13.9258722588498,3.26465616318295,0,0,0,0,0,0,0,0,0,0,0,0,2.15231080825299,0,0,0,0,0,0,0,0,0,0,0,0.853828638089378,1.52542140314453,4.85967267338367,0.783939179315021,0,0,0,0,0,0,4.55848377495571,0,0.225980740780532,0,0,0,2.54216797555244,0.480952921509202,0,0,0.144090417154106,0,0,1.87271237384595,0,0.707082103850386,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,4.3929380109778,0,0,0.0671834724867263,0,0,0,0,0,0,0.169346664131569,0,0,0,0.137539436597234,0,0,0,0,0.335434687599266,0,0,0.528001682597033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.513260513652988,1.40963004463334,10.3583790190664,1.25763444079733,8.69902016229111,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633936370075881,0,0,0,0,0,0.839277046316667,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0.471878893390961,1.28400018965175,0.924205329202706,0,0,0,0,0,0,0,0,2.06998520703863,0,0,0,0,0,0,0,0,1.14986184875636,0,0,0,0,0.443511850813194,0,0,0,0,2.6002644994473,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14553434272025,0,0,0,0.196300467230486,0,0,0,0,1.94284397223656,0,0,0,0,0,0.603851374266694,0,0,0,0,0,0,0,0,0,0,0,0,1.42843150884526,0,0.722172300202514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,4.90438158372256,0,0,0.0620747142958579,0.112131862580613,0,0,3.26575121845442,0.684466602170562,1.41439311330634,0.573777643141411,0.332660356546013,2.36069478971826,0,0,0,4.69281884806909,0,0,0.665756774185513,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0.697801167972428,0.655324116390517,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.527008714158756,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0.272746120590835,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,5.66173773985134,0.439001141634502,0,0.100528972411631,0.370353780634118,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.283550194484773,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.909382714338778,1.66435439510497,1.20956117331872,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.200506470303285,1.56537681191024,0,0,0,0,0.231046011313244,0,0,0.633309773357254,0,0,0,0,0,0,0.509752546090077,0,0,0,0,0,0,0,1.95777922130672,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15699440752685,0.192190067365106,0.510450849978337,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,1.41215701165169,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,7.87856799634377,2.96964680832639,6.75753544618311,0,0,0,0,0,0,0,0,0,0,0,0.629078458031288,1.25314822272926,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.1137934482855,4.57656570526979,0.472775363535873,0,0,0,0,0,0,0,0,0,0,0.83654246567162,0.153900517007594,0,0,0,0,1.27600463892768,0,0.533034776018635,0,0,0,0,0,0,0,0,13.9258722588498,3.26465616318295,0,0,0,0,0,0,0,0,0,0,0,0,2.15231080825299,0,0,0,0,0,0,0,0,0,0,0,0.853828638089378,1.52542140314453,4.85967267338367,0.783939179315021,0,0,0,0,0,0,4.55848377495571,0,0.225980740780532,0,0,0,2.54216797555244,0.480952921509202,0,0,0.144090417154106,0,0,1.87271237384595,0,0.707082103850386,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,4.3929380109778,0,0,0.0671834724867263,0,0,0,0,0,0,0.169346664131569,0,0,0,0.137539436597234,0,0,0,0,0.335434687599266,0,0,0.528001682597033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.513260513652988,1.40963004463334,10.3583790190664,1.25763444079733,8.69902016229111,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633936370075881,0,0,0,0,0,0.839277046316667,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0.471878893390961,1.28400018965175,0.924205329202706,0,0,0,0,0,0,0,0,2.06998520703863,0,0,0,0,0,0,0,0,1.14986184875636,0,0,0,0,0.443511850813194,0,0,0,0,2.6002644994473,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14553434272025,0,0,0,0.196300467230486,0,0,0,0,1.94284397223656,0,0,0,0,0,0.603851374266694,0,0,0,0,0,0,0,0,0,0,0,0,1.42843150884526,0,0.722172300202514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,4.90438158372256,0,0,0.0620747142958579,0.112131862580613,0,0,3.26575121845442,0.684466602170562,1.41439311330634,0.573777643141411,0.332660356546013,2.36069478971826,0,0,0,4.69281884806909,0,0,0.665756774185513,0.201273793591026,0 | ||
|short_description=p5@SCEL | |short_description=p5@SCEL | ||
}} | }} |
Latest revision as of 01:29, 18 September 2015
Short description: | p5@SCEL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SCEL_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000348770, ENST00000535157, NM_001160706, NM_003843, NM_144777, uc001vki.2, uc001vkj.2, uc010thx.1_5end |
EntrezGene: | SCEL |
HGNC: | 10573 |
UniProt: | F8W725F5H651B7Z797O95171 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.97e-12 | 19 |
amnion mesenchymal stem cell | 1.95e-10 | 5 |
epithelial cell of uterus | 3.10e-08 | 6 |
stromal cell of endometrium | 3.10e-08 | 6 |
placental epithelial cell | 1.32e-07 | 3 |
pigment cell (sensu Vertebrata) | 7.35e-07 | 1 |
iris pigment epithelial cell | 7.35e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 3.44e-17 | 14 |
membranous layer | 3.44e-17 | 14 |
extraembryonic structure | 1.23e-12 | 24 |
amnion | 2.51e-12 | 7 |
somatic layer of lateral plate mesoderm | 8.49e-11 | 8 |
endoderm-derived structure | 2.45e-07 | 160 |
endoderm | 2.45e-07 | 160 |
presumptive endoderm | 2.45e-07 | 160 |
chorion | 6.06e-07 | 7 |
lower lobe of right lung | 6.23e-07 | 1 |
right lung lobe | 6.23e-07 | 1 |
lower lobe of lung | 6.23e-07 | 1 |
lobe of lung | 6.23e-07 | 1 |
right lung | 6.23e-07 | 1 |
iris epithelium | 7.35e-07 | 1 |
iris | 7.35e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 5.45e-12 | 2 |
carcinoma | 5.87e-09 | 106 |
female reproductive endometrioid cancer | 3.10e-08 | 6 |
adenocarcinoma | 5.54e-07 | 25 |