FFCP PHASE1:Hg19::chr5:145316120..145316174,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=153769 | |EntrezGene=153769 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26299 | |HGNC=26299 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TEC5,Q08AM8 | |UniProt=Q8TEC5,Q08AM8 | ||
|association_with_transcript=0bp_to_ENST00000359120,NM_152550,uc003lnt.2_5end | |association_with_transcript=0bp_to_ENST00000359120,NM_152550,uc003lnt.2_5end | ||
|cluster_id=chr5:145316120..145316174,+ | |||
|description=CAGE_peak_1_at_SH3RF2_5end | |description=CAGE_peak_1_at_SH3RF2_5end | ||
|id=chr5:145316120..145316174,+ | |id=chr5:145316120..145316174,+ | ||
|ontology_enrichment_celltype=CL:0002076;6.35e-13;42!CL:0002368;5.71e-09;13!CL:0002251;7.13e-09;20!CL:0000077;2.77e-07;19 | |ontology_enrichment_celltype=CL:0000066!1.08e-25!254;CL:0000223!1.48e-15!59;CL:0002076!2.55e-15!43;CL:0000220!1.10e-10!246;CL:0002321!2.02e-10!248;CL:0002368!2.68e-08!13;CL:0000076!4.24e-08!62;CL:0002251!7.17e-08!21;CL:0000077!9.80e-07!19 | ||
| | |ontology_enrichment_celltype_v019=CL:0002076;6.35e-13;42!CL:0002368;5.71e-09;13!CL:0002251;7.13e-09;20!CL:0000077;2.77e-07;19 | ||
|ontology_enrichment_disease= | |ontology_enrichment_celltype_v019_2=CL:0000066,4.71e-27,253;CL:0000223,1.17e-17,58;CL:0002076,1.99e-17,42;CL:0002321,1.78e-09,250;CL:0002368,5.36e-09,13;CL:0002251,5.49e-09,20;CL:0000076,7.37e-08,63;CL:0000077,2.83e-07,19 | ||
|ontology_enrichment_uberon=UBERON:0004921;3.84e-09;33!UBERON:0001555;1.21e-07;54!UBERON:0000165;4.52e-07;28!UBERON:0002365;5.08e-07;31!UBERON:0002330;5.08e-07;31 | |ontology_enrichment_development_v019=CL:0000223;3.07e-09;58 | ||
|ontology_enrichment_disease=DOID:305!2.93e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.11e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.61e-21!169;UBERON:0000925!4.61e-21!169;UBERON:0006595!4.61e-21!169;UBERON:0000481!2.60e-17!347;UBERON:0001007!7.95e-17!155;UBERON:0001555!7.95e-17!155;UBERON:0007026!7.95e-17!155;UBERON:0003104!2.32e-14!238;UBERON:0009142!2.32e-14!238;UBERON:0004921!1.31e-12!129;UBERON:0004185!1.31e-12!129;UBERON:0000077!5.67e-12!130;UBERON:0000480!1.53e-11!626;UBERON:0000467!1.77e-11!625;UBERON:0000466!1.68e-10!126;UBERON:0000468!3.52e-10!659;UBERON:0000062!5.21e-10!511;UBERON:0001004!6.53e-10!72;UBERON:0005911!1.74e-09!82;UBERON:0001048!2.37e-09!168;UBERON:0000922!5.52e-09!612;UBERON:0002050!6.11e-09!605;UBERON:0005423!6.11e-09!605;UBERON:0000923!9.99e-09!604;UBERON:0005291!9.99e-09!604;UBERON:0006598!9.99e-09!604;UBERON:0002532!9.99e-09!604;UBERON:0001041!1.61e-08!98;UBERON:0000464!1.62e-08!104;UBERON:0000483!1.84e-08!309;UBERON:0000475!2.26e-08!365;UBERON:0003914!3.75e-08!118;UBERON:0000119!5.25e-08!312;UBERON:0000477!5.53e-08!286;UBERON:0004111!8.52e-08!241;UBERON:0000064!3.14e-07!219;UBERON:0005177!3.82e-07!107;UBERON:0000165!6.51e-07!28;UBERON:0000930!6.51e-07!28;UBERON:0002100!7.24e-07!216;UBERON:0002365!7.27e-07!31;UBERON:0002330!7.27e-07!31;UBERON:0000166!7.85e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;3.84e-09;33!UBERON:0001555;1.21e-07;54!UBERON:0000165;4.52e-07;28!UBERON:0002365;5.08e-07;31!UBERON:0002330;5.08e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.66e-19,160;UBERON:0000925,1.66e-19,160;UBERON:0006595,1.66e-19,160;UBERON:0001007,6.95e-16,145;UBERON:0001555,6.95e-16,145;UBERON:0007026,6.95e-16,145;UBERON:0004921,3.62e-12,118;UBERON:0005911,6.42e-09,82;UBERON:0001041,8.66e-09,87;UBERON:0003914,2.15e-08,117;UBERON:0005177,2.40e-08,101;UBERON:0001004,2.90e-08,74;UBERON:0001048,5.45e-08,160;UBERON:0005423,2.23e-07,581;UBERON:0002365,3.50e-07,31;UBERON:0002330,3.50e-07,31;UBERON:0000922,5.07e-07,592 | |||
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| ||
|short_description=p1@SH3RF2 | |short_description=p1@SH3RF2 | ||
}} | }} |
Latest revision as of 19:48, 15 September 2015
Short description: | p1@SH3RF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SH3RF2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000359120, NM_152550, uc003lnt.2_5end |
EntrezGene: | SH3RF2 |
HGNC: | 26299 |
UniProt: | Q8TEC5Q08AM8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.71e-27 | 253 |
endodermal cell | 1.17e-17 | 58 |
endo-epithelial cell | 1.99e-17 | 42 |
embryonic cell | 1.78e-09 | 250 |
respiratory epithelial cell | 5.36e-09 | 13 |
epithelial cell of alimentary canal | 5.49e-09 | 20 |
squamous epithelial cell | 7.37e-08 | 63 |
mesothelial cell | 2.83e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.66e-19 | 160 |
endoderm | 1.66e-19 | 160 |
presumptive endoderm | 1.66e-19 | 160 |
digestive system | 6.95e-16 | 145 |
digestive tract | 6.95e-16 | 145 |
primitive gut | 6.95e-16 | 145 |
subdivision of digestive tract | 3.62e-12 | 118 |
endo-epithelium | 6.42e-09 | 82 |
foregut | 8.66e-09 | 87 |
epithelial tube | 2.15e-08 | 117 |
trunk region element | 2.40e-08 | 101 |
respiratory system | 2.90e-08 | 74 |
primordium | 5.45e-08 | 160 |
developing anatomical structure | 2.23e-07 | 581 |
exocrine gland | 3.50e-07 | 31 |
exocrine system | 3.50e-07 | 31 |
embryo | 5.07e-07 | 592 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.11e-08 | 106 |