FFCP PHASE1:Hg19::chr10:50323543..50323582,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=196740 | |EntrezGene=196740 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26470 | |HGNC=26470 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IW00 | |UniProt=Q8IW00 | ||
|association_with_transcript=0bp_to_ENST00000298454,ENST00000332853,NM_001031746,NM_144984,uc001jhf.2,uc001jhh.2_5end | |association_with_transcript=0bp_to_ENST00000298454,ENST00000332853,NM_001031746,NM_144984,uc001jhf.2,uc001jhh.2_5end | ||
|cluster_id=chr10:50323543..50323582,- | |||
|description=CAGE_peak_1_at_VSTM4_5end | |description=CAGE_peak_1_at_VSTM4_5end | ||
|id=chr10:50323543..50323582,- | |id=chr10:50323543..50323582,- | ||
|ontology_enrichment_celltype=CL:0002620;1.12e-09;23!CL:0000136;3.36e-07;13!CL:0000057;6.09e-07;73 | |ontology_enrichment_celltype=CL:0000055!2.17e-18!180;CL:0000057!1.01e-16!75;CL:0002620!6.47e-09!23;CL:0000136!4.33e-07!15 | ||
| | |ontology_enrichment_celltype_v019=CL:0002620;1.12e-09;23!CL:0000136;3.36e-07;13!CL:0000057;6.09e-07;73 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.99e-16,76;CL:0002620,8.77e-10,23;CL:0000136,5.21e-08,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0007023;1.38e-08;114!UBERON:0001013;4.47e-08;14!UBERON:0000073;2.22e-07;53!UBERON:0002616;2.22e-07;53!UBERON:0002780;2.64e-07;41!UBERON:0001890;2.64e-07;41 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.96e-27!115;UBERON:0000475!6.21e-17!365;UBERON:0001049!5.88e-15!57;UBERON:0005068!5.88e-15!57;UBERON:0006241!5.88e-15!57;UBERON:0007135!5.88e-15!57;UBERON:0002616!9.48e-15!59;UBERON:0005743!1.60e-13!86;UBERON:0002346!2.11e-13!90;UBERON:0003075!2.17e-13!86;UBERON:0007284!2.17e-13!86;UBERON:0001017!3.28e-13!82;UBERON:0000955!1.62e-12!69;UBERON:0006238!1.62e-12!69;UBERON:0000073!1.78e-11!94;UBERON:0001016!1.78e-11!94;UBERON:0003080!2.54e-11!42;UBERON:0002780!9.45e-11!41;UBERON:0001890!9.45e-11!41;UBERON:0006240!9.45e-11!41;UBERON:0000153!9.51e-11!129;UBERON:0007811!9.51e-11!129;UBERON:0000033!2.48e-10!123;UBERON:0000481!2.73e-09!347;UBERON:0001893!2.97e-09!34;UBERON:0002020!4.17e-09!34;UBERON:0003528!4.17e-09!34;UBERON:0002791!6.91e-09!33;UBERON:0000924!7.81e-09!173;UBERON:0006601!7.81e-09!173;UBERON:0004121!1.13e-08!169;UBERON:0000119!1.97e-08!312;UBERON:0001869!2.56e-08!32;UBERON:0003056!2.94e-08!61;UBERON:0000477!4.77e-08!286;UBERON:0000914!5.18e-08!83;UBERON:0002329!5.18e-08!83;UBERON:0003077!5.18e-08!83;UBERON:0003059!5.18e-08!83;UBERON:0007282!5.18e-08!83;UBERON:0009618!5.18e-08!83;UBERON:0007285!5.18e-08!83;UBERON:0000483!6.19e-08!309;UBERON:0000025!6.52e-08!194;UBERON:0000479!9.27e-08!787;UBERON:0004290!1.09e-07!70;UBERON:0000468!2.07e-07!659;UBERON:0004111!2.97e-07!241;UBERON:0001013!3.10e-07!14;UBERON:0002199!3.51e-07!45;UBERON:0002416!3.51e-07!45;UBERON:0002619!9.78e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.38e-08;114!UBERON:0001013;4.47e-08;14!UBERON:0000073;2.22e-07;53!UBERON:0002616;2.22e-07;53!UBERON:0002780;2.64e-07;41!UBERON:0001890;2.64e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.38e-31,114;UBERON:0010314,2.73e-14,132;UBERON:0001049,1.13e-13,56;UBERON:0005068,1.13e-13,56;UBERON:0006241,1.13e-13,56;UBERON:0007135,1.13e-13,56;UBERON:0000073,3.22e-12,53;UBERON:0002616,3.22e-12,53;UBERON:0000955,2.16e-11,68;UBERON:0006238,2.16e-11,68;UBERON:0001017,2.64e-11,81;UBERON:0003075,4.32e-10,82;UBERON:0007284,4.32e-10,82;UBERON:0000479,9.46e-10,773;UBERON:0002346,1.26e-09,86;UBERON:0001016,1.33e-09,89;UBERON:0002780,2.00e-09,41;UBERON:0001890,2.00e-09,41;UBERON:0003080,2.00e-09,41;UBERON:0006240,2.00e-09,41;UBERON:0001013,3.52e-08,14;UBERON:0002199,4.07e-08,46;UBERON:0002416,4.07e-08,46;UBERON:0001893,1.01e-07,34;UBERON:0010371,1.28e-07,104;UBERON:0003528,1.41e-07,34;UBERON:0002020,1.41e-07,34;UBERON:0002097,6.26e-07,41;UBERON:0002791,7.10e-07,32;UBERON:0001869,9.51e-07,32 | |||
|phase1_expression=2.36181893051724,5.1384125733836,2.96004248601539,4.00293193412522,3.12872766099101,5.23403114460221,7.59899634504932,4.42203911398782,19.3277364867881,1.22866968250754,0,0,0,0,0.662794751455832,2.6893005858071,0.602694528023977,2.19093027116212,0.487932798790507,4.30923703268758,2.24400760368678,1.25381888591235,0.572471974262113,0.547497700291537,0.753255837568817,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0.645484683583826,0,0,0,0.224723484445085,0.306083892370903,0.320929027076094,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222820913770347,0,0,0,0,0,0.164437904603676,0.552700035571697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0.670700859703636,1.91793842765295,5.06014813338393,4.01070328508712,6.66293987219789,2.3858578411533,16.058950719987,0.0945348171640679,0.886917589850256,0.263504357079378,7.40031776562076,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0.402829317109147,0,1.70843440283719,0,2.43042584364528,0.0892997282840798,0.44905874525234,0.225222960966644,0,0,0,0,0,0,6.95760732373446,1.51956613997496,2.51577443545116,6.02356903572509,1.77334191099179,1.68203280042692,1.06748995729705,2.4666754841716,2.17847724779836,0.269421344139376,0.490385709340376,8.47601594811616,2.88087962239999,2.10889288650417,4.37024107562449,0.570471821544449,1.64393548606981,2.46612447151906,4.04682360920329,3.51127016755621,2.04154171254893,0.859840221182376,7.02615311995205,10.6920257155385,8.65434252474949,3.64064544775211,0,2.35670559535693,1.62654075833553,0.554128230968366,3.07284334616587,3.98434134538726,7.06118876861005,0.453728732640084,7.89314397030993,9.8236398856541,8.47727604638247,8.40255069036326,7.9350447513598,6.69865404118636,7.258557396932,6.41350062516812,5.65134629934952,7.32057945307932,8.83679026966074,13.0933306023238,7.10019185033229,3.62707553619505,3.56077243852024,0,0,0,0.487894824518382,0,0.348581828608555,0.725627385107593,0.252320850875628,0,3.12899064659632,14.1513006402435,2.76269842704961,4.17931135228781,0.721879481669586,0,0,0,0,0,0,0,0,0,0.738155454624648,1.40241773803446,2.8810180793198,5.88034845542168,0,0.982827216677626,4.72631925345123,0,0,0.171567810298526,0,0,0,0,0.651616610620649,0,1.44331342025273,1.27523445472584,0.939269553886573,0.288732895522148,0.462985512576611,0,0,0,0,0,0.148631162288728,0,0.16798212819886,0,0,0,0,0,0,0,0.144119953416961,0.12624243342638,0.444485260045183,0,0,1.71072446022705,0.514137463516618,0,0,3.25180144601546,8.28324130783232,1.54010400223995,0.646358578788889,3.57656445851882,4.22651376278,3.98907174877306,5.2003718455683,0.771622122786426,0,0.532844358032199,0.857867961948885,0,0,3.58309802723109,0.710783897485092,0,1.50719688529793,0,1.89948683245908,0,0,0,3.83399768786532,5.7430967917057,5.70547620162874,0.289562613335158,1.02738161275192,2.68591444859843,0,0,0.215627574859517,0,0.76228387266739,1.30139853857622,1.54657762555539,0.335032530668698,0,0,0,0,2.33113834266366,0.500170521059677,0.813795071099207,1.66376689224646,2.67643483195743,1.10391690523754,2.81139395982512,3.31040709700491,2.27407504055985,1.03473071292505,3.32112799267718,4.42486004500088,5.38678409702114,22.1255307932897,31.2260515667879,0,0,0,0,0,0.30239029332968,4.96215615637554,4.75732117192994,7.29716245525991,3.97231362692673,2.55853624533352,4.18220194973379,13.3576259800492,0.771048469013278,3.01854933032316,2.13530605635904,1.03850885836724,2.44041794765914,0,0,0,0.574072240823034,0.364182336013434,2.62248829918848,0,0,0.784349769176855,0,0.422206515571503,1.13733384070897,0.170093705276516,0,0,0,0,0.509752546090077,0,0,0,0,0.512900250232778,0.656029291399411,0.650756789328606,5.66725564062472,0.366277859273374,0.330037999682352,1.14853107599234,0,0,4.06017016826912,0.616194468458578,2.76306614507033,2.89456802217514,1.50388342815583,3.33538396002726,3.23861184181183,11.7522287053693,0,0,0,0.2023155617111,0.464845549297286,9.75918275174984,1.3940745403212,7.08477234405004,1.06461206063404,3.47973196830029,1.11194531462352,1.86062352764589,4.09374206295634,2.21465597303108,1.14378116354295,0.767693373934002,0.855877976067841,2.22742273548156,0,2.87795932133304,0.54907405947211,1.88499843753098,1.2130948894399,0,3.37006764991185,1.46290121726877,2.68084838594413,2.11300293513511,2.8664981395677,0,4.52032466480971,4.96228809191512,3.98063385144732,3.94605796728386,0.578775534266688,1.9676842561399,0.608731130888112,0.92947049429925,1.69017361519345,0.286822704408103,0.0982490410131212,0.35667105148125,0,10.1331664942879,8.89096210991735,0.75894634753143,1.04980416073495,0,0,0,4.70719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.478278818186467,0,0.191505370132367,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.88588442577902,3.03401304373784,0,0,0,0.296964680832639,0,0.994147647766298,7.31480965334666,0.667852230137435,0,1.47787785689595,23.5112626136262,3.03912307084262,0,0,0,6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| ||
|short_description=p1@VSTM4 | |short_description=p1@VSTM4 | ||
}} | }} |
Latest revision as of 09:36, 18 September 2015
Short description: | p1@VSTM4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VSTM4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000298454, ENST00000332853, NM_001031746, NM_144984, uc001jhf.2, uc001jhh.2_5end |
EntrezGene: | VSTM4 |
HGNC: | 26470 |
UniProt: | Q8IW00 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.99e-16 | 76 |
skin fibroblast | 8.77e-10 | 23 |
fat cell | 5.21e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.38e-31 | 114 |
structure with developmental contribution from neural crest | 2.73e-14 | 132 |
neural tube | 1.13e-13 | 56 |
neural rod | 1.13e-13 | 56 |
future spinal cord | 1.13e-13 | 56 |
neural keel | 1.13e-13 | 56 |
regional part of nervous system | 3.22e-12 | 53 |
regional part of brain | 3.22e-12 | 53 |
brain | 2.16e-11 | 68 |
future brain | 2.16e-11 | 68 |
central nervous system | 2.64e-11 | 81 |
neural plate | 4.32e-10 | 82 |
presumptive neural plate | 4.32e-10 | 82 |
tissue | 9.46e-10 | 773 |
neurectoderm | 1.26e-09 | 86 |
nervous system | 1.33e-09 | 89 |
regional part of forebrain | 2.00e-09 | 41 |
forebrain | 2.00e-09 | 41 |
anterior neural tube | 2.00e-09 | 41 |
future forebrain | 2.00e-09 | 41 |
adipose tissue | 3.52e-08 | 14 |
integument | 4.07e-08 | 46 |
integumental system | 4.07e-08 | 46 |
telencephalon | 1.01e-07 | 34 |
ecto-epithelium | 1.28e-07 | 104 |
brain grey matter | 1.41e-07 | 34 |
gray matter | 1.41e-07 | 34 |
skin of body | 6.26e-07 | 41 |
regional part of telencephalon | 7.10e-07 | 32 |
cerebral hemisphere | 9.51e-07 | 32 |