FFCP PHASE1:Hg19::chr7:27170042..27170064,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3201 | |EntrezGene=3201 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5105 | |HGNC=5105 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-232bp_to_ENST00000511914_5end | |association_with_transcript=-232bp_to_ENST00000511914_5end | ||
|cluster_id=chr7:27170042..27170064,- | |||
|description=CAGE_peak_4_at_HOXA4_5end | |description=CAGE_peak_4_at_HOXA4_5end | ||
|id=chr7:27170042..27170064,- | |id=chr7:27170042..27170064,- | ||
|ontology_enrichment_celltype=CL:0002539;4.61e-11;10!CL:0000359;4.72e-08;32 | |ontology_enrichment_celltype=CL:0000222!2.22e-13!119;CL:0000183!3.11e-09!59;CL:0000187!3.72e-09!54;CL:0000192!5.36e-09!42;CL:0000514!5.36e-09!42;CL:0000680!5.53e-09!57;CL:0000056!5.53e-09!57;CL:0000355!5.53e-09!57;CL:0000393!2.36e-07!60;CL:0000211!2.36e-07!60;CL:0002539!6.03e-07!10 | ||
| | |ontology_enrichment_celltype_v019=CL:0002539;4.61e-11;10!CL:0000359;4.72e-08;32 | ||
|ontology_enrichment_celltype_v019_2=CL:0002539,2.69e-11,10;CL:0000359,3.97e-08,32 | |||
|ontology_enrichment_development_v019=UBERON:0006241;3.30e-14;3!UBERON:0003057;3.30e-14;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0002240;3.30e-14;3!UBERON:0005174;3.30e-14;3!UBERON:0001137;3.30e-14;3!UBERON:0002298;1.42e-12;6!UBERON:0004237;4.61e-11;10!UBERON:0004695;4.61e-11;10!UBERON:0002111;4.61e-11;10!UBERON:0004178;4.61e-11;10!UBERON:0001135;2.79e-07;15!UBERON:0000988;3.57e-07;3!UBERON:0001896;4.76e-07;3!UBERON:0005290;4.76e-07;3 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!3.49e-12!118;UBERON:0001981!1.63e-11!60;UBERON:0007500!1.63e-11!60;UBERON:0004537!1.63e-11!60;UBERON:0006965!1.63e-11!60;UBERON:0000490!6.96e-11!138;UBERON:0004573!3.55e-10!33;UBERON:0004571!3.55e-10!33;UBERON:0000055!6.37e-10!69;UBERON:0009569!1.51e-09!113;UBERON:0002100!2.42e-09!216;UBERON:0000483!1.09e-08!309;UBERON:0002385!1.49e-08!63;UBERON:0001015!1.49e-08!63;UBERON:0000383!1.49e-08!63;UBERON:0000119!2.34e-08!312;UBERON:0001637!2.98e-08!42;UBERON:0003509!2.98e-08!42;UBERON:0004572!2.98e-08!42;UBERON:0000947!3.87e-08!21;UBERON:0010191!3.87e-08!21;UBERON:0004872!5.18e-08!84;UBERON:0001135!7.54e-08!15;UBERON:0001134!8.58e-08!61;UBERON:0002036!8.58e-08!61;UBERON:0003082!8.58e-08!61;UBERON:0000025!9.54e-08!194;UBERON:0005177!2.11e-07!107;UBERON:0002049!2.55e-07!79;UBERON:0007798!2.55e-07!79;UBERON:0005256!4.90e-07!143;UBERON:0004237!6.03e-07!10;UBERON:0004695!6.03e-07!10;UBERON:0002111!6.03e-07!10;UBERON:0004178!6.03e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0002240;3.30e-14;3!UBERON:0005174;3.30e-14;3!UBERON:0001137;3.30e-14;3!UBERON:0002298;1.42e-12;6!UBERON:0004237;4.61e-11;10!UBERON:0004695;4.61e-11;10!UBERON:0002111;4.61e-11;10!UBERON:0004178;4.61e-11;10!UBERON:0001135;2.79e-07;15!UBERON:0000988;3.57e-07;3!UBERON:0001896;4.76e-07;3!UBERON:0005290;4.76e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002240,3.73e-14,3;UBERON:0005174,3.73e-14,3;UBERON:0001137,3.73e-14,3;UBERON:0003076,3.89e-14,15;UBERON:0003057,3.89e-14,15;UBERON:0002298,1.08e-12,6;UBERON:0004237,2.69e-11,10;UBERON:0004695,2.69e-11,10;UBERON:0002111,2.69e-11,10;UBERON:0004178,2.69e-11,10;UBERON:0000025,6.13e-09,192;UBERON:0001135,1.98e-07,15;UBERON:0007500,3.29e-07,59;UBERON:0001981,3.29e-07,59;UBERON:0004537,3.29e-07,59;UBERON:0006965,3.29e-07,59;UBERON:0000988,3.59e-07,3;UBERON:0001896,3.59e-07,3;UBERON:0005290,3.59e-07,3;UBERON:0010096,3.59e-07,3 | |||
|phase1_expression=0,0,0,0,1.34088328328186,0.872338524100369,0,0,0.522371256399677,0.491467873003018,0,0,0.263766978228454,0,0,0.672325146451775,3.61616716814386,1.46062018077475,1.46379839637152,0,0,0.940364164434263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0,0,0,0,0,0,0.402829317109147,0,0.24406205754817,0,0.81014194788176,0.0892997282840798,0.673588117878509,0.563057402416611,1.53316637465883,0,0.366403487860815,0,0,0.436094052142534,0.496971951695318,0.12663051166458,0.264818361626438,0,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0.18611685633159,0,0.194874010322397,0,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0.196221465125346,0,0.738155454624648,1.40241773803446,0,2.94017422771084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0.380508304469197,0,0.858486162094873,0,0,0,0,0,0,0.179117045405697,0.290633938513962,0,0,0,0,0,0,0.126995788584338,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0.514414748524284,0,0.266422179016099,0.428933980974443,0,0,0,0.355391948742546,0,1.80863626235752,1.74306691720059,2.49932477955143,0,0,0,0,0,0,0.434343920002738,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0,0.384417447767103,0,1.60853921143608,0,0.308419387605311,0,0.328508624055237,1.03850885836724,0.116210378459959,0.241718899183244,0,0.0920809889358963,0,0,0.131124414959424,0,0.231046011313244,3.92174884588428,0,0.105551628892876,2.27466768141793,0.680374821106063,0.431831832204279,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0.309123034943167,0.27470839445503,0.165018999841176,0,1.30012049207304,0,0.096670718292122,0.616194468458578,0.307007349452259,0.137836572484531,0.322260734604821,0,0,0.0890320356467374,0,0,0,0,1.85938219718914,0.62962469366128,0.6970372701606,0,0,1.73986598415015,0,0,0,0,0,0.255897791311334,0,0.636406495851874,0.78494864019923,0.179872457583315,0,0.117812402345686,0.202182481573316,0,0,0.975267478179181,0.731140468893853,3.16950440270266,0.272999822815972,0.282810863907425,4.52032466480971,4.41092274836899,0,0.438450885253763,0.578775534266688,0.655894752046633,0.202910376962704,0,0,0,0,0,0,0.211107635297664,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70481688083848,0.47748896947538,0.296964680832639,0.307160702099232,0,0,0,0,0.211125408127993,0.597743964753209,0,0,0.715880777515084,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359030577639089,0,0,0,0,0,0,0,0,0,0,0,0,0.421996129056054,0.652931232636591,0.282706142867882,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0.789168805698781,0,0,0,0,0.311064574191741,0,0,0,0,0,0,0.173559738335131,0.195984794828755,0.174118413160805,0.52418000472609,0,0,0,0,2.13375836274523,0,0,0.274083849293502,0.19871461170299,0,0.195551382734803,0,0.426905989478705,0,0,2.51980511565014,0.686379991447858,0,0,0.471388069233591,0,0.209205692624666,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0.360299883542404,0,1.02418136999391,0.247247575143499,0.404421263125109,0,0,0,0,0,0,0,0,0,0,0,0.394028536495991,0.734364233889974,0,0,0.191915197319445,0,0,0,0,0.864221491201268,0.326587360109409,0,0,0.511164065356265,1.35974509824151,0.293104467356165,0,1.42211251997706,0,0,0,0.427149650270779,1.10043013569766,0,0.496166021811951,0,0,0,0,0,0.306345576763462,0,0,0,0,0,0.573409195690071,1.66393577305278,2.85643453530364,0,0.124980407962107,0.151649117541648,0.285465333544967,0,0.468334905806882,0.144921028610825,0.298509605773748,0.467426619694449,0.554805861502613,0.189403005275089,0.251567901752575,0,0.686520205190771,0,0.466311601748341,0.73927574994817,0,0.899606224327209,1.86315548251511,0.414706207840855,0.53168342911599,0,2.25386413495828,1.14241563650639,0.813741466409323,0,0.859284456339908,0,0.398095888698616,0,0,0,0,0,0.428883182749851,0,0.906823702049089,0.926089897295336,0,0.179088841081487,0,1.75427239662966,0,0.38582807654183,0,0,0.345430341731199,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,1.10463570151104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6124909547064,0,0,0,0,0,0,0,0,0,0.235939446695481,0,0,0,1.3807198521202,0,0.150420656698515,0.40341013740704,0,0,0,0,0.135075169236789,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,5.09772997326238,0,0,0.111231401892069,0,0,0.280272163313789,0,1.07963795609311,0,0,0,0,1.04314963381548,0.801711364730253,0,0,0,0,0.236664001461131,0.0852134047591577,0,0,0,0,0.447421727191169,0,0,0,0,0,0.485710993059139,0,0,0.237840181555137,0,0,1.20770274853339,0.308696632431779,0.437119121007915,0,0.245148321753905,0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| ||
|short_description=p4@HOXA4 | |short_description=p4@HOXA4 | ||
}} | }} |
Latest revision as of 01:20, 18 September 2015
Short description: | p4@HOXA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_HOXA4_5end |
Coexpression cluster: | NA |
Association with transcript: | -232bp_to_ENST00000511914_5end |
EntrezGene: | HOXA4 |
HGNC: | 5105 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
aortic smooth muscle cell | 2.69e-11 | 10 |
vascular associated smooth muscle cell | 3.97e-08 | 32 |
Ontology term | p-value | n |
---|---|---|
spinal cord | 3.73e-14 | 3 |
dorsal region element | 3.73e-14 | 3 |
dorsum | 3.73e-14 | 3 |
posterior neural tube | 3.89e-14 | 15 |
chordal neural plate | 3.89e-14 | 15 |
brainstem | 1.08e-12 | 6 |
blood vessel smooth muscle | 2.69e-11 | 10 |
arterial system smooth muscle | 2.69e-11 | 10 |
artery smooth muscle tissue | 2.69e-11 | 10 |
aorta smooth muscle tissue | 2.69e-11 | 10 |
tube | 6.13e-09 | 192 |
smooth muscle tissue | 1.98e-07 | 15 |
epithelial tube open at both ends | 3.29e-07 | 59 |
blood vessel | 3.29e-07 | 59 |
blood vasculature | 3.29e-07 | 59 |
vascular cord | 3.29e-07 | 59 |
pons | 3.59e-07 | 3 |
medulla oblongata | 3.59e-07 | 3 |
myelencephalon | 3.59e-07 | 3 |
future myelencephalon | 3.59e-07 | 3 |