FFCP PHASE1:Hg19::chr4:77956454..77956472,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:77956454..77956472,+ | |||
|description=CAGE_peak_at_chr4:77956454..77956472,+ | |description=CAGE_peak_at_chr4:77956454..77956472,+ | ||
|id=chr4:77956454..77956472,+ | |id=chr4:77956454..77956472,+ | ||
|ontology_enrichment_celltype=CL:0000135;2.58e-11;3!CL:0000388;2.58e-11;3!CL:0002579;6.42e-11;3!CL:0002504;1.57e-10;3!CL:1000279;1.57e-10;3!CL:1000280;1.57e-10;3!CL:0002561;1.61e-08;2!CL:0002334;3.60e-07;12!CL:0002559;5.07e-07;5!CL:0000136;7.82e-07;13 | |ontology_enrichment_celltype=CL:0000055!2.17e-13!180;CL:0000057!6.34e-10!75;CL:0002620!3.23e-08!23 | ||
| | |ontology_enrichment_celltype_v019=CL:0000135;2.58e-11;3!CL:0000388;2.58e-11;3!CL:0002579;6.42e-11;3!CL:0002504;1.57e-10;3!CL:1000279;1.57e-10;3!CL:1000280;1.57e-10;3!CL:0002561;1.61e-08;2!CL:0002334;3.60e-07;12!CL:0002559;5.07e-07;5!CL:0000136;7.82e-07;13 | ||
|ontology_enrichment_disease=DOID:17;6.15e-07;5!DOID:450;6.15e-07;5!DOID:66;6.15e-07;5!DOID:423;6.15e-07;5!DOID:0080000;6.15e-07;5!DOID:11722;6.15e-07;5 | |ontology_enrichment_celltype_v019_2=CL:0000135,1.44e-11,3;CL:0000388,1.44e-11,3;CL:0002579,7.32e-11,3;CL:0002504,3.08e-10,3;CL:1000279,3.08e-10,3;CL:1000280,3.08e-10,3;CL:0002561,1.65e-08,2;CL:0000057,6.68e-08,76;CL:0002334,3.63e-07,12;CL:0002559,4.85e-07,5 | ||
|ontology_enrichment_uberon=UBERON:0003688;7.96e-15;6!UBERON:0002358;7.96e-15;6!UBERON:0003684;7.96e-15;6!UBERON:0001178;7.96e-15;6!UBERON:0007846;2.58e-11;3!UBERON:0000043;2.58e-11;3!UBERON:0007845;2.58e-11;3!UBERON:0004457;9.20e-10;9!UBERON:0000042;9.20e-10;9!UBERON:0005933;1.61e-08;2!UBERON:0005942;1.61e-08;2!UBERON:0005932;1.61e-08;2!UBERON:0001135;1.71e-07;15!UBERON:0002073;5.07e-07;5 | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;6.15e-07;5!DOID:450;6.15e-07;5!DOID:66;6.15e-07;5!DOID:423;6.15e-07;5!DOID:0080000;6.15e-07;5!DOID:11722;6.15e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,7.57e-07,5;DOID:450,7.57e-07,5;DOID:66,7.57e-07,5;DOID:423,7.57e-07,5;DOID:0080000,7.57e-07,5;DOID:11722,7.57e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0002199!3.04e-08!45;UBERON:0002416!3.04e-08!45;UBERON:0002097!5.20e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;7.96e-15;6!UBERON:0002358;7.96e-15;6!UBERON:0003684;7.96e-15;6!UBERON:0001178;7.96e-15;6!UBERON:0007846;2.58e-11;3!UBERON:0000043;2.58e-11;3!UBERON:0007845;2.58e-11;3!UBERON:0004457;9.20e-10;9!UBERON:0000042;9.20e-10;9!UBERON:0005933;1.61e-08;2!UBERON:0005942;1.61e-08;2!UBERON:0005932;1.61e-08;2!UBERON:0001135;1.71e-07;15!UBERON:0002073;5.07e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.03e-14,6;UBERON:0002358,1.03e-14,6;UBERON:0003684,1.03e-14,6;UBERON:0001178,1.03e-14,6;UBERON:0007846,1.44e-11,3;UBERON:0000043,1.44e-11,3;UBERON:0007845,1.44e-11,3;UBERON:0005933,1.65e-08,2;UBERON:0005942,1.65e-08,2;UBERON:0005932,1.65e-08,2;UBERON:0001135,1.57e-07,15;UBERON:0004457,3.58e-07,12;UBERON:0000042,3.58e-07,12;UBERON:0002073,4.85e-07,5;UBERON:0005086,4.85e-07,5;UBERON:0002199,7.19e-07,46;UBERON:0002416,7.19e-07,46 | |||
|phase1_expression=0.908391896352783,3.63970890614671,0.704772020479856,3.00219895059391,3.12872766099101,0.872338524100369,2.53299878168311,0,1.04474251279935,0,0,0.436882744260345,0,0.247532705920093,0.331397375727916,2.01697543935533,1.80808358407193,0,0.975865597581014,0,0,0.313454721478088,0.286235987131057,1.09499540058307,0.87879847716362,0.152826811495903,0,0.157421562627358,0,0,0,0,0,0,0,0.142169232487422,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24930726552346,0,0,0,0,0,0,0,0.767175371061182,0.722878304769133,1.00267582127178,0.869079113764942,0,0,0.0945348171640679,0.221729397462564,0.263504357079378,0.0654895377488563,0,0,0,0.174129737299267,0.26591592103773,0,0,0,0,0.860234595106124,0,0,0,0.550236083880135,0.626984899610432,0.258416759169329,0,0,0,0,0.24406205754817,0.367663080345869,0,0.357198913136319,0,0.225222960966644,0,0,0.183201743930407,0,0,0.436094052142534,1.98788780678127,1.01304409331664,0.132409180813219,0.286836620748814,0,0.560677600142307,0,0.74000264525148,0,0.269421344139376,0.326923806226917,0,0,0,0.312160076830321,0,0.597794722207204,0.117434498643765,0.647491777472526,0.280901613404497,0.204154171254893,0.368502951935304,0.103325781175765,0,1.7308685049499,0,0,0.336672227908132,0.250237039743928,0,0.438977620880838,1.83892677479412,0.150238058906597,0.453728732640084,1.07633781413317,2.34913127700424,2.54318281391474,0.300091096084402,0.92747276314595,0.772921620136887,1.48893485065272,0.506328996723799,0.974370051611986,0.504867548488229,0.828449087780694,0.323292113637624,1.77504796258307,0.806016785821122,0.67824236924195,0.193260853163297,0.545492241181669,0,0.121973706129595,0.265059536642971,0.232387885739037,0.414644220061482,0,0.36497735907583,0,0.643240938192885,1.38134921352481,3.71494342425583,2.16563844500876,0.354920400119532,0.168584690078102,0.241011029883482,0.330881918197182,0,0.237270619111097,0,0.392442930250692,0,0,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0.109750285408626,0,0,0.0925884451585296,0,0,2.88662684050547,0.231860809950154,0.117408694235822,0,0,0.761016608938393,0.790204397959275,0,0,0.468008530278475,0.148631162288728,0,0.335964256397719,0,0.179117045405697,0.290633938513962,0,0,0.264145302039678,0.207328115540772,0,0.25248486685276,0.126995788584338,0,0,1.71072446022705,0.102827492703324,0.600686115687835,0.285826432630578,0,0,0.2933531432838,0.258543431515556,0,0.845302752556,1.59562869950922,1.04007436911366,0,0,0,0.714889968290738,0,0.823240336780769,0,0,0,0.602878754119172,0,0,0,0.502257091432126,0,0.239624855491583,1.14861935834114,0,1.30303176000821,1.2328579353023,0.537182889719687,0,0,0.215627574859517,0,0.254094624222463,0,0,0.502548796003046,3.18969375826582,0,2.99161459204025,0,0.24538298343828,0.500170521059677,0,0.831883446123229,3.21172179834891,0.788512075169673,0.35142424497814,0.300946099727719,0,0,0,0,1.04260337361699,0.391602314925481,0,0,0,0,0,0,0,2.48107807818777,0.153461973288062,3.92924132206303,1.15325234330131,1.53512174720011,2.0911009748669,0,0.616838775210622,0.355123450626254,0.246381468041427,0,0,0.120859449591622,0.601519410909855,0.0920809889358963,0.114814448164607,0.728364672026868,0.917870904715969,0,0.0770153371044148,0,0,0.527758144464379,0,0,0.863663664408557,0,0.270946437543853,0,0.254876273045038,0,0,0,0,0,0,0.650756789328606,0,0.183138929636687,0.165018999841176,0,0,0,0,0.462145851343933,0.15350367472613,0.137836572484531,0.214840489736547,0.145016693914229,0.255679882248303,0.445160178233687,0.661139661443912,0.192190067365106,0.255225424989168,0,1.85938219718914,0.62962469366128,0,0,0,0,0,0,0.372158369359667,0.949138274156178,0,0,0,0,0,1.07923474549989,1.37268514868027,1.06031162111118,0,0,0,0,0.487426979262569,0,0.272999822815972,0.565621727814851,0,0.551365343546124,0,0,0,1.31178950409327,0.202910376962704,0,0,0.430234056612155,0.589494246078727,0,0.354761064070598,0.844430541190656,0.329294892959902,0,0.349934720244983,0,0,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0.238231775457789,0,0,0,0,0.427296284509893,0,0,0,0.144269212976445,0.0711418433484141,0.159426272728822,0,0,0,0.324621940274555,0,0,0,0,0,0,0.403599414382095,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,0.293016358543788,0,0.222886768554957,0,0.47748896947538,0,0.307160702099232,0,0.281338832821026,0,0,0.211125408127993,0,0,0,0.20453736500431,0.123084805461069,1.55519793830904,0.0898683511473268,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0.1137934482855,0.254253650292766,0,0,0,0.520874984799877,0,0.120596438625408,1.52581736317083,0,0,0,0.10893846351899,0,0.0769502585037971,0.227884111694002,0,0.359030577639089,0.54323685961004,0.638002319463839,0.549585560411174,0,1.02193298195737,0.156980256395025,0,0,0,0,0.189753732724185,0,0.210998064528027,0,0.141353071433941,0,0,0.0884575645033392,0,0,0.24712787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| ||
|short_description=p@chr4:77956454..77956472,+ | |short_description=p@chr4:77956454..77956472,+ | ||
}} | }} |
Latest revision as of 07:02, 30 July 2015
Short description: | p@chr4:77956454..77956472, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:77956454..77956472, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibrocyte | 1.44e-11 | 3 |
tendon cell | 1.44e-11 | 3 |
omentum preadipocyte | 7.32e-11 | 3 |
enteric smooth muscle cell | 3.08e-10 | 3 |
smooth muscle cell of large intestine | 3.08e-10 | 3 |
smooth muscle cell of colon | 3.08e-10 | 3 |
outer root sheath cell | 1.65e-08 | 2 |
fibroblast | 6.68e-08 | 76 |
preadipocyte | 3.63e-07 | 12 |
hair follicle cell | 4.85e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.03e-14 | 6 |
peritoneum | 1.03e-14 | 6 |
abdominal cavity | 1.03e-14 | 6 |
visceral peritoneum | 1.03e-14 | 6 |
dense regular connective tissue | 1.44e-11 | 3 |
tendon | 1.44e-11 | 3 |
regular connective tissue | 1.44e-11 | 3 |
hair root sheath | 1.65e-08 | 2 |
hair outer root sheath | 1.65e-08 | 2 |
bulb of hair follicle | 1.65e-08 | 2 |
smooth muscle tissue | 1.57e-07 | 15 |
cavity lining | 3.58e-07 | 12 |
serous membrane | 3.58e-07 | 12 |
hair follicle | 4.85e-07 | 5 |
hair follicle placode | 4.85e-07 | 5 |
integument | 7.19e-07 | 46 |
integumental system | 7.19e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 7.57e-07 | 5 |
myotonic disease | 7.57e-07 | 5 |
muscle tissue disease | 7.57e-07 | 5 |
myopathy | 7.57e-07 | 5 |
muscular disease | 7.57e-07 | 5 |
myotonic dystrophy | 7.57e-07 | 5 |