UBERON:0003929: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="An epithelium that is part of a digestive tract [Obol]." [OBOL:automatic] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0003929 | |||
|is_a=UBERON:0000483 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=gut epithelium | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001555 | |part_of=UBERON:0001555 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Epithelium lining the lumen of the gut.[TAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Epithelium lining the lumen of the gut.[TAO]" xsd:string | ||
| | |subset= | ||
| | |synonym="digestive tract epithelial tissue" EXACT [OBOL:automatic];;"digestive tract epithelium" EXACT [OBOL:automatic];;"epithelial tissue of digestive tract" EXACT [OBOL:automatic];;"epithelial tissue of gut" EXACT [OBOL:automatic];;"epithelial tissue of lower gastrointestinal tract" EXACT [OBOL:automatic];;"epithelium of digestive tract" EXACT [OBOL:automatic];;"epithelium of gut" EXACT [OBOL:automatic];;"epithelium of lower gastrointestinal tract" EXACT [OBOL:automatic];;"gut epithelial tissue" EXACT [OBOL:automatic];;"lower gastrointestinal tract epithelial tissue" EXACT [OBOL:automatic];;"lower gastrointestinal tract epithelium" EXACT [OBOL:automatic] | ||
|union_of= | |||
|xref=BTO:0000956;;EHDAA2:0004567;;ncithesaurus:Gut_Epithelium;;TAO:0005123;;XAO:0003200;;ZFA:0005123 | |||
}} | }} | ||
Latest revision as of 17:42, 12 September 2014
| Name: | gut epithelium | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "An epithelium that is part of a digestive tract [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"digestive tract epithelial tissue" EXACT [OBOL:automatic] "digestive tract epithelium" EXACT [OBOL:automatic] "epithelial tissue of digestive tract" EXACT [OBOL:automatic] "epithelial tissue of gut" EXACT [OBOL:automatic] "epithelial tissue of lower gastrointestinal tract" EXACT [OBOL:automatic] "epithelium of digestive tract" EXACT [OBOL:automatic] "epithelium of gut" EXACT [OBOL:automatic] "epithelium of lower gastrointestinal tract" EXACT [OBOL:automatic] "gut epithelial tissue" EXACT [OBOL:automatic] "lower gastrointestinal tract epithelial tissue" EXACT [OBOL:automatic] "lower gastrointestinal tract epithelium" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000483(epithelium) |
|---|---|
| part_of: | UBERON:0001555(digestive tract) |
Children
| is a: | UBERON:0001277 (intestinal epithelium),UBERON:0002424 (oral epithelium),UBERON:0003351 (pharyngeal epithelium),UBERON:0003353 (epithelium of hindgut),UBERON:0004809 (salivary gland epithelium),UBERON:0009497 (epithelium of foregut-midgut junction),UBERON:0012481 (cloacal epithelium),UBERON:0015833 (foregut epithelium) |
|---|---|
| part of: | CL:0000682 (M cell of gut),UBERON:0009497 (epithelium of foregut-midgut junction),UBERON:0009722 (entire pharyngeal arch endoderm),UBERON:0009846 (embryonic cloacal epithelium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10511-107D7
- 10513-107D9 (colon carcinoma cell line:CACO-2)
- 10523-107F1
- 10557-107I8
- 10635-108I5
- 10653-109B5
- 10812-111B2 (normal intestinal epithelial cell line:FHs 74 Int)
- 11221-116B6 (Gingival epithelial cells, donor1 (GEA11))
- 11246-116E4 (Intestinal epithelial cells (polarized), donor1)
... further results Mouse (Mus musculus)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10511-107D7
- 10513-107D9 (colon carcinoma cell line:CACO-2)
- 10523-107F1
- 10557-107I8
- 10635-108I5
- 10653-109B5
- 10812-111B2 (normal intestinal epithelial cell line:FHs 74 Int)
- 11221-116B6 (Gingival epithelial cells, donor1 (GEA11))
- 11246-116E4 (Intestinal epithelial cells (polarized), donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003929 (gut epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.73e-40 | FFCP PHASE2:Hg19::chr6:8652489..8652515,+#_247ba57cce5f63a858567239f12c76aa | p1@HULC |
| 8.73e-40 | FFCP PHASE1:Hg19::chr6:8652489..8652515,+#_247ba57cce5f63a858567239f12c76aa | p1@HULC |
| 1.57e-36 | FFCP PHASE1:Hg19::chr10:101841398..101841415,-#_10f577aed3495434c39c8802c1a70eb2 | p2@CPN1 |
| 1.57e-36 | FFCP PHASE2:Hg19::chr10:101841398..101841415,-#_10f577aed3495434c39c8802c1a70eb2 | p2@CPN1 |
| 1.73e-36 | FFCP PHASE1:Hg19::chr10:101841588..101841632,-#_0c57ea4035292c210697e6e12bcd33db | p1@CPN1 |
| 1.73e-36 | FFCP PHASE2:Hg19::chr10:101841588..101841632,-#_0c57ea4035292c210697e6e12bcd33db | p1@CPN1 |
| 2.65e-36 | FFCP PHASE2:Mm9::chr14:30823509..30823529,+#_3ce53c320338db13134cbe49e4eb60c6 | p@chr14:30823509..30823529, + |
| 2.65e-36 | FFCP PHASE1:Mm9::chr14:30823509..30823529,+#_3ce53c320338db13134cbe49e4eb60c6 | p@chr14:30823509..30823529, + |
| 3.89e-36 | FFCP PHASE1:Hg19::chr6:64231600..64231615,+#_c33f4a956f77b440ac2aa77a45b4c896 | p24@PTP4A1 |
| 3.89e-36 | FFCP PHASE2:Hg19::chr6:64231600..64231615,+#_c33f4a956f77b440ac2aa77a45b4c896 | p24@PTP4A1 |
| 5.11e-34 | FFCP PHASE2:Hg19::chr12:100867777..100867788,+#_d29fd56b7878596c930fae2299d9a9dd | p5@NR1H4 |
| 5.11e-34 | FFCP PHASE1:Hg19::chr12:100867777..100867788,+#_d29fd56b7878596c930fae2299d9a9dd | p5@NR1H4 |
| 4.28e-33 | FFCP PHASE2:Hg19::chr1:161192171..161192185,-#_f1992340bb88835d7ae1668aa7f909c1 | p@chr1:161192171..161192185, - |
| 4.28e-33 | FFCP PHASE1:Hg19::chr1:161192171..161192185,-#_f1992340bb88835d7ae1668aa7f909c1 | p@chr1:161192171..161192185, - |
| 1.09e-32 | FFCP PHASE2:Hg19::chr20:10349456..10349475,-#_3b7814aa4e5b7a0052c4dffac81dd535 | p1@ENST00000421143 |
| 1.09e-32 | FFCP PHASE1:Hg19::chr20:10349456..10349475,-#_3b7814aa4e5b7a0052c4dffac81dd535 | p1@ENST00000421143 |
| 7.4e-31 | FFCP PHASE1:Hg19::chr17:7082668..7082725,-#_58403b75bde1eaefaa8cd147962b3cb9 | p1@ASGR1 |
| 7.4e-31 | FFCP PHASE2:Hg19::chr17:7082668..7082725,-#_58403b75bde1eaefaa8cd147962b3cb9 | p1@ASGR1 |
| 9.27e-31 | FFCP PHASE1:Hg19::chr1:161192149..161192162,-#_44fc11f8d3449bde7b4744d3c7d99280 | p@chr1:161192149..161192162, - |
| 9.27e-31 | FFCP PHASE2:Hg19::chr1:161192149..161192162,-#_44fc11f8d3449bde7b4744d3c7d99280 | p@chr1:161192149..161192162, - |
| 9.81e-31 | FFCP PHASE1:Hg19::chr1:54359854..54359866,+#_df63937860fae7e31f953e72f651c8f9 | p1@DIO1 |
| 9.81e-31 | FFCP PHASE2:Hg19::chr1:54359854..54359866,+#_df63937860fae7e31f953e72f651c8f9 | p1@DIO1 |
| 1.52e-30 | FFCP PHASE2:Hg19::chr1:177939154..177939204,-#_d2e48b73e3c9ba60f161ec2021bc3c80 | p4@SEC16B |
| 1.52e-30 | FFCP PHASE1:Hg19::chr1:177939154..177939204,-#_d2e48b73e3c9ba60f161ec2021bc3c80 | p4@SEC16B |
| 1.82e-30 | FFCP PHASE2:Hg19::chr22:37505474..37505478,-#_158494b8e7750e1a0781fe2bcea9de20 | p3@TMPRSS6 |
| 1.82e-30 | FFCP PHASE1:Hg19::chr22:37505474..37505478,-#_158494b8e7750e1a0781fe2bcea9de20 | p3@TMPRSS6 |
| 6.95e-30 | FFCP PHASE1:Hg19::chr17:7082560..7082572,-#_4a2122f09a464e03b09e91aed0a326d2 | p4@ASGR1 |
| 6.95e-30 | FFCP PHASE2:Hg19::chr17:7082560..7082572,-#_4a2122f09a464e03b09e91aed0a326d2 | p4@ASGR1 |
| 8.03e-30 | FFCP PHASE2:Hg19::chr19:56653064..56653103,+#_9b50828d80acc3b53ded9d31acf3f79f | p1@AK124209 |
| 8.03e-30 | FFCP PHASE1:Hg19::chr19:56653064..56653103,+#_9b50828d80acc3b53ded9d31acf3f79f | p1@AK124209 |
| 8.91e-30 | FFCP PHASE2:Hg19::chr4:155528001..155528060,-#_536b715cd9223e91192b08b2c4fbfe6b | p@chr4:155528001..155528060, - |
| 8.91e-30 | FFCP PHASE1:Hg19::chr4:155533277..155533357,-#_536b715cd9223e91192b08b2c4fbfe6b | p2@FGG |
| 8.91e-30 | FFCP PHASE1:Hg19::chr4:155528001..155528060,-#_536b715cd9223e91192b08b2c4fbfe6b | p@chr4:155528001..155528060, - |
| 8.91e-30 | FFCP PHASE2:Hg19::chr4:155533277..155533357,-#_536b715cd9223e91192b08b2c4fbfe6b | p2@FGG |
| 8.91e-30 | FFCP PHASE1:Hg19::chr1:161192118..161192141,-#_536b715cd9223e91192b08b2c4fbfe6b | p@chr1:161192118..161192141, - |
| 8.91e-30 | FFCP PHASE2:Hg19::chr4:155530853..155530879,-#_536b715cd9223e91192b08b2c4fbfe6b | p3@FGG |
| 8.91e-30 | FFCP PHASE1:Hg19::chr4:155530853..155530879,-#_536b715cd9223e91192b08b2c4fbfe6b | p3@FGG |
| 8.91e-30 | FFCP PHASE2:Hg19::chr1:161192118..161192141,-#_536b715cd9223e91192b08b2c4fbfe6b | p@chr1:161192118..161192141, - |
| 1.01e-29 | FFCP PHASE1:Hg19::chr11:63137251..63137267,+#_4f6251bf32de876a966e60587cbaf63c | p1@SLC22A9 |
| 1.01e-29 | FFCP PHASE2:Hg19::chr11:63137251..63137267,+#_4f6251bf32de876a966e60587cbaf63c | p1@SLC22A9 |
| 1.04e-29 | FFCP PHASE2:Hg19::chr17:7017634..7017649,-#_2fcd01c288c8f54fc390e6964883c3e4 | p7@ASGR2 |
| 1.04e-29 | FFCP PHASE1:Hg19::chr17:7017634..7017649,-#_2fcd01c288c8f54fc390e6964883c3e4 | p7@ASGR2 |
| 1.19e-29 | FFCP PHASE1:Hg19::chr14:94759595..94759613,-#_00580a87423c832adc104febcf726bb9 | p2@SERPINA10 |
| 1.19e-29 | FFCP PHASE2:Hg19::chr14:94759595..94759613,-#_00580a87423c832adc104febcf726bb9 | p2@SERPINA10 |
| 1.32e-29 | FFCP PHASE1:Hg19::chr14:94759576..94759594,-#_c90401270bc5dafed23e040361c2370c | p3@SERPINA10 |
| 1.32e-29 | FFCP PHASE2:Hg19::chr14:94759576..94759594,-#_c90401270bc5dafed23e040361c2370c | p3@SERPINA10 |
| 2.94e-29 | FFCP PHASE2:Hg19::chr16:85832119..85832145,+#_d8018e9919e0cc6020358515c1a90bc7 | p@chr16:85832119..85832145, + |
| 2.94e-29 | FFCP PHASE1:Hg19::chr16:85832119..85832145,+#_d8018e9919e0cc6020358515c1a90bc7 | p@chr16:85832119..85832145, + |
| 3.04e-29 | FFCP PHASE1:Hg19::chr8:144417558..144417572,-#_adfeccf5dc6b3c2ecc9ac806fb88cd72 | p7@TOP1MT |
| 3.04e-29 | FFCP PHASE2:Hg19::chr8:144417558..144417572,-#_adfeccf5dc6b3c2ecc9ac806fb88cd72 | p7@TOP1MT |
| 3.04e-29 | FFCP PHASE2:Hg19::chr2:21233797..21233804,-#_adfeccf5dc6b3c2ecc9ac806fb88cd72 | p58@APOB |
| 3.04e-29 | FFCP PHASE1:Hg19::chr2:21233797..21233804,-#_adfeccf5dc6b3c2ecc9ac806fb88cd72 | p58@APOB |
| 2.05e-28 | FFCP PHASE1:Hg19::chr4:70361615..70361631,-#_4b66793e2b43f79c6b44d29c1003b7dd | p1@UGT2B4 |
| 2.05e-28 | FFCP PHASE2:Hg19::chr4:70361615..70361631,-#_4b66793e2b43f79c6b44d29c1003b7dd | p1@UGT2B4 |
| 2.17e-28 | FFCP PHASE1:Hg19::chr12:24191262..24191291,-#_6157cac7042ad865bb99f0d47a5763f3 | p@chr12:24191262..24191291, - |
| 2.17e-28 | FFCP PHASE2:Hg19::chr12:24191262..24191291,-#_6157cac7042ad865bb99f0d47a5763f3 | p@chr12:24191262..24191291, - |
| 2.82e-28 | FFCP PHASE1:Hg19::chr17:7017968..7018021,-#_f3d01571ee7fdc0d2aaf112940371178 | p1@ASGR2 |
| 2.82e-28 | FFCP PHASE2:Hg19::chr17:7017968..7018021,-#_f3d01571ee7fdc0d2aaf112940371178 | p1@ASGR2 |
| 6.93e-28 | FFCP PHASE1:Hg19::chr14:94759548..94759571,-#_d84bb538a768b21c479826d62251f4ce | p1@SERPINA10 |
| 6.93e-28 | FFCP PHASE2:Hg19::chr14:94759548..94759571,-#_d84bb538a768b21c479826d62251f4ce | p1@SERPINA10 |
| 7.03e-28 | FFCP PHASE2:Hg19::chr12:100867695..100867706,+#_efb40074455bd80e8222372d96cc65ff | p6@NR1H4 |
| 7.03e-28 | FFCP PHASE1:Hg19::chr12:100867695..100867706,+#_efb40074455bd80e8222372d96cc65ff | p6@NR1H4 |
| 8.24e-28 | FFCP PHASE2:Hg19::chr13:113760134..113760150,+#_f905d6e6a07c2caf11324e5446b7d8af | p2@F7 |
| 8.24e-28 | FFCP PHASE1:Hg19::chr13:113760134..113760150,+#_f905d6e6a07c2caf11324e5446b7d8af | p2@F7 |
| 1.62e-27 | FFCP PHASE1:Hg19::chr6:64231645..64231678,+#_688411b0213291552e1bdd1f878e39ee | p6@PTP4A1 |
| 1.62e-27 | FFCP PHASE2:Hg19::chr6:64231645..64231678,+#_688411b0213291552e1bdd1f878e39ee | p6@PTP4A1 |
| 1.87e-27 | FFCP PHASE1:Hg19::chr2:201171064..201171071,+#_a52f124f4de1b40367bd6b0fc9013721 | p19@SPATS2L |
| 1.87e-27 | FFCP PHASE2:Hg19::chr2:201171064..201171071,+#_a52f124f4de1b40367bd6b0fc9013721 | p19@SPATS2L |
| 2.04e-27 | FFCP PHASE2:Hg19::chr17:4692335..4692344,+#_2ae50247c76eb95521a85338e7adcd7b | p3@GLTPD2 |
| 2.04e-27 | FFCP PHASE1:Hg19::chr17:4692335..4692344,+#_2ae50247c76eb95521a85338e7adcd7b | p3@GLTPD2 |
| 2.4e-27 | FFCP PHASE2:Mm9::chr11:60622345..60622377,-#_f8e162425dff726faeb3d4438b703fbb | p@chr11:60622345..60622377, - |
| 2.4e-27 | FFCP PHASE1:Mm9::chr11:60622345..60622377,-#_f8e162425dff726faeb3d4438b703fbb | p@chr11:60622345..60622377, - |
| 2.64e-27 | FFCP PHASE1:Hg19::chr4:74283297..74283332,-#_badf688342dfef2fd79ad41b397dc506 | p@chr4:74283297..74283332, - |
| 2.64e-27 | FFCP PHASE2:Hg19::chr4:74283297..74283332,-#_badf688342dfef2fd79ad41b397dc506 | p@chr4:74283297..74283332, - |
| 5.31e-27 | FFCP PHASE2:Mm9::chr5:90897694..90897705,+#_1d7686694a63f664d9d154a35c4d7f01 | p@chr5:90897694..90897705, + |
| 5.31e-27 | FFCP PHASE1:Mm9::chr5:90897694..90897705,+#_1d7686694a63f664d9d154a35c4d7f01 | p@chr5:90897694..90897705, + |
| 5.91e-27 | FFCP PHASE1:Mm9::chr8:131012371..131012382,-#_0f7ed8479882d5c49ce892870b33a56c | p2@uc009nzu.1 |
| 5.91e-27 | FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_0f7ed8479882d5c49ce892870b33a56c | p8@uc009bpa.1 |
| 5.91e-27 | FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_0f7ed8479882d5c49ce892870b33a56c | p8@uc009bpa.1 |
| 5.91e-27 | FFCP PHASE2:Mm9::chr8:131012371..131012382,-#_0f7ed8479882d5c49ce892870b33a56c | p2@uc009nzu.1 |
| 6.71e-27 | FFCP PHASE2:Mm9::chr19:25169885..25169900,+#_fc931cbc585e36789b4997912a868d1c | p@chr19:25169885..25169900, + |
| 6.71e-27 | FFCP PHASE1:Mm9::chr19:25169885..25169900,+#_fc931cbc585e36789b4997912a868d1c | p@chr19:25169885..25169900, + |
| 6.76e-27 | FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_8df56433f1a80b9679e984cad4d36c1e | p4@uc009bpa.1 |
| 6.76e-27 | FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_8df56433f1a80b9679e984cad4d36c1e | p4@uc009bpa.1 |
| 7.17e-27 | FFCP PHASE1:Mm9::chr7:121912281..121912295,+#_868402581bde6ac428b4c4aae6ab7637 | p6@Insc |
| 7.17e-27 | FFCP PHASE2:Mm9::chr7:121912281..121912295,+#_868402581bde6ac428b4c4aae6ab7637 | p6@Insc |
| 7.25e-27 | FFCP PHASE1:Hg19::chr22:50826072..50826087,+#_f0251b5b0834c97b323fbe527497ef1e | p@chr22:50826072..50826087, + |
| 7.25e-27 | FFCP PHASE2:Hg19::chr22:50826072..50826087,+#_f0251b5b0834c97b323fbe527497ef1e | p@chr22:50826072..50826087, + |
| 1.11e-26 | FFCP PHASE2:Hg19::chr8:17752845..17752864,-#_4904c590a009562c45b8ed1e59bb6c02 | p2@FGL1 |
| 1.11e-26 | FFCP PHASE1:Hg19::chr8:17752845..17752864,-#_4904c590a009562c45b8ed1e59bb6c02 | p2@FGL1 |
| 1.47e-26 | FFCP PHASE2:Hg19::chr10:54531372..54531384,-#_14109702d381520708601089fc8f3713 | p1@MBL2 |
| 1.47e-26 | FFCP PHASE1:Hg19::chr10:54531372..54531384,-#_14109702d381520708601089fc8f3713 | p1@MBL2 |
| 1.5e-26 | FFCP PHASE2:Hg19::chr11:116706961..116706976,-#_3bcdda17208e2a9004d45d6566bd5a50 | p@chr11:116706961..116706976, - |
| 1.5e-26 | FFCP PHASE1:Hg19::chr11:116706961..116706976,-#_3bcdda17208e2a9004d45d6566bd5a50 | p@chr11:116706961..116706976, - |
| 1.57e-26 | FFCP PHASE2:Hg19::chr17:7082573..7082598,-#_9dd6784028cb07d643cd021901bfe5c6 | p5@ASGR1 |
| 1.57e-26 | FFCP PHASE1:Hg19::chrX:153769426..153769436,+#_9dd6784028cb07d643cd021901bfe5c6 | p18@IKBKG |
| 1.57e-26 | FFCP PHASE1:Hg19::chr17:7082573..7082598,-#_9dd6784028cb07d643cd021901bfe5c6 | p5@ASGR1 |
| 1.57e-26 | FFCP PHASE2:Hg19::chrX:153769426..153769436,+#_9dd6784028cb07d643cd021901bfe5c6 | p18@IKBKG |
| 1.77e-26 | FFCP PHASE1:Hg19::chr4:155527893..155527907,-#_f4c8549389df0013d007cb3659ccdbc2 | p@chr4:155527893..155527907, - |
| 1.77e-26 | FFCP PHASE2:Hg19::chr4:155527893..155527907,-#_f4c8549389df0013d007cb3659ccdbc2 | p@chr4:155527893..155527907, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Epithelium lining the lumen of the gut.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
