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{{UBERON
{{UBERON
|id=UBERON:0000916
|alt_id=UBERON:FBbt_00000020-FMA_9577-MA_0000029-MIAA_0000298
|name=abdomen
|anatomical_img_id=FMA:9577
|namespace=
|def="In vertebrates such as mammals the abdomen (belly) constitutes the part of the body between the thorax (chest) and pelvis. The region enclosed by the abdomen is termed the abdominal cavity." [Wikipedia:Abdomen]
|xref=BTO:0000020;;EFO:0000968;;EV:0100011;;FMA:9577;;GAID:16;;galen:Abdomen;;MA:0000029;;MAT:0000298;;MESH:A.01.047;;MIAA:0000298;;OpenCyc:Mx4rvVjgyZwpEbGdrcN5Y29ycA;;SCTID:302553009
|is_a=UBERON:0009569
|synonym="abdominopelvic region" EXACT [FMA:9577];;"abdominopelvis" EXACT [FMA:9577];;"adult abdomen" RELATED [];;"belly" RELATED []
|comment=Taxon notes: Vertebrate specific. In arthropods 'abdomen' is the most distal section of the body which lies behind the thorax or cephalothorax. If need be we can introduce some grouping class
|comment=Taxon notes: Vertebrate specific. In arthropods 'abdomen' is the most distal section of the body which lies behind the thorax or cephalothorax. If need be we can introduce some grouping class
|alt_id=UBERON:FBbt_00000020-FMA_9577-MA_0000029-MIAA_0000298
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="In vertebrates such as mammals the abdomen (belly) constitutes the part of the body between the thorax (chest) and pelvis. The region enclosed by the abdomen is termed the abdominal cavity." [Wikipedia:Abdomen]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000916
|is_a=UBERON:0009569
|is_obsolete=
|located_in=
|located_in=
|name=abdomen
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002417
|part_of=UBERON:0002417
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="abdominopelvic region" EXACT [FMA:9577];;"abdominopelvis" EXACT [FMA:9577];;"adult abdomen" RELATED [];;"belly" RELATED []
|union_of=
|xref=BTO:0000020;;EFO:0000968;;EV:0100011;;FMA:9577;;GAID:16;;galen:Abdomen;;MA:0000029;;MAT:0000298;;MESH:A.01.047;;MIAA:0000298;;OpenCyc:Mx4rvVjgyZwpEbGdrcN5Y29ycA;;SCTID:302553009
}}
}}

Latest revision as of 17:10, 12 September 2014

Name:abdomen
Namespace:FANTOM
Definition:"In vertebrates such as mammals the abdomen (belly) constitutes the part of the body between the thorax (chest) and pelvis. The region enclosed by the abdomen is termed the abdominal cavity." [Wikipedia:Abdomen]
Xrefs:
links:

BTO:0000020
EFO:0000968
EV:0100011
FMA:9577
GAID:16
galen:Abdomen
MA:0000029
MAT:0000298
MESH:A.01.047
MIAA:0000298
OpenCyc:Mx4rvVjgyZwpEbGdrcN5Y29ycA

SCTID:302553009
Synonyms: "abdominopelvic region" EXACT [FMA:9577]
"abdominopelvis" EXACT [FMA:9577]
"adult abdomen" RELATED []
"belly" RELATED []
Comments:Taxon notes: Vertebrate specific. In arthropods 'abdomen' is the most distal section of the body which lies behind the thorax or cephalothorax. If need be we can introduce some grouping class
Alt_id: UBERON:FBbt_00000020-FMA_9577-MA_0000029-MIAA_0000298
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0009569(subdivision of trunk)
part_of:UBERON:0002417(abdominal segment of trunk)



Children

part of:UBERON:0002106 (spleen),UBERON:0002107 (liver),UBERON:0002110 (gallbladder),UBERON:0002113 (kidney),UBERON:0002369 (adrenal gland),UBERON:0003497 (abdomen blood vessel),UBERON:0003567 (abdomen connective tissue),UBERON:0003684 (abdominal cavity),UBERON:0003697 (abdominal wall),UBERON:0005172 (abdomen element),UBERON:0006858 (adrenal/interrenal gland),UBERON:0017672 (abdominal viscera)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000916 (abdomen), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.88e-45FFCP PHASE2:Hg19::chr10:99344428..99344441,+#_1cb8f4e9434a59c6db36fc2c183765e8p5@PI4K2A
3.88e-45FFCP PHASE1:Hg19::chr10:99344428..99344441,+#_1cb8f4e9434a59c6db36fc2c183765e8p5@PI4K2A
7.55e-41FFCP PHASE1:Hg19::chr16:57831685..57831697,-#_b904d1ff37823ac95618f28aba548a9fp7@KIFC3
7.55e-41FFCP PHASE2:Hg19::chr16:57831685..57831697,-#_b904d1ff37823ac95618f28aba548a9fp7@KIFC3
7.31e-40FFCP PHASE1:Mm9::chr4:95246108..95246119,+#_3bdda883a27db553c59ab746fd72b265p4@Fggy
7.31e-40FFCP PHASE2:Mm9::chr4:95246108..95246119,+#_3bdda883a27db553c59ab746fd72b265p4@Fggy
3.21e-39FFCP PHASE2:Mm9::chr12:58298278..58298292,-#_e10a6d38ffbfdac02c96890fdcf53959p4@Slc25a21
3.21e-39FFCP PHASE1:Mm9::chr12:58298278..58298292,-#_e10a6d38ffbfdac02c96890fdcf53959p4@Slc25a21
1.15e-38FFCP PHASE1:Mm9::chr12:58298298..58298317,-#_bb637eac217e7212f9b3919e4aecaf23p3@Slc25a21
1.15e-38FFCP PHASE2:Mm9::chr12:58298298..58298317,-#_bb637eac217e7212f9b3919e4aecaf23p3@Slc25a21
2.74e-38FFCP PHASE1:Hg19::chr1:55331310..55331365,-#_32e1ebf5d92a37f18b178a2657b7bf19p3@DHCR24
2.74e-38FFCP PHASE2:Hg19::chr1:55331310..55331365,-#_32e1ebf5d92a37f18b178a2657b7bf19p3@DHCR24
4.6e-38FFCP PHASE1:Mm9::chr12:58298249..58298262,-#_1b63d0cc675c7628075089bf4773b864p5@Slc25a21
4.6e-38FFCP PHASE2:Mm9::chr12:58298249..58298262,-#_1b63d0cc675c7628075089bf4773b864p5@Slc25a21
4.65e-37FFCP PHASE1:Mm9::chr4:129255765..129255776,-#_0cc10ab34dcb9bbd31173d5b5e74808dp2@Fam167b
4.65e-37FFCP PHASE2:Mm9::chr4:129255765..129255776,-#_0cc10ab34dcb9bbd31173d5b5e74808dp2@Fam167b
6.07e-37FFCP PHASE2:Hg19::chr8:21911054..21911086,+#_63ec928f03b7a2150f5e8f2c929c34b1p9@EPB49
6.07e-37FFCP PHASE1:Hg19::chr8:21911054..21911086,+#_63ec928f03b7a2150f5e8f2c929c34b1p9@EPB49
1.34e-36FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_cd49c2b23d494187fcf1eda0117bff76p4@PAX2
1.34e-36FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_cd49c2b23d494187fcf1eda0117bff76p4@PAX2
3.37e-36FFCP PHASE2:Hg19::chr11:117695449..117695466,-#_d1dc992cd78ffd87ed5fbc62add0b55dp1@FXYD2
3.37e-36FFCP PHASE1:Hg19::chr11:117695449..117695466,-#_d1dc992cd78ffd87ed5fbc62add0b55dp1@FXYD2
8.22e-36FFCP PHASE1:Mm9::chr6:34129226..34129246,+#_b898533218c43b1c9f1b5e5ae3b7e4a7p2@ENSMUST00000145644
8.22e-36FFCP PHASE2:Mm9::chr6:34129226..34129246,+#_b898533218c43b1c9f1b5e5ae3b7e4a7p2@ENSMUST00000145644
1.41e-35FFCP PHASE2:Mm9::chr10:58904532..58904548,-#_72be87006a1b96ac15a20a0ba7251f08p3@Oit3
1.41e-35FFCP PHASE1:Mm9::chr10:58904532..58904548,-#_72be87006a1b96ac15a20a0ba7251f08p3@Oit3
1.53e-35FFCP PHASE1:Mm9::chr8:73247943..73247958,+#_df27df0f7a13745300f64cca2da3eb28p3@Pde4c
1.53e-35FFCP PHASE2:Mm9::chr8:73247943..73247958,+#_df27df0f7a13745300f64cca2da3eb28p3@Pde4c
3.31e-35FFCP PHASE1:Mm9::chr9:44611035..44611044,-#_1fd30204dcd251a200502816d7f2b8a5p4@Ttc36
3.31e-35FFCP PHASE2:Mm9::chr9:44611035..44611044,-#_1fd30204dcd251a200502816d7f2b8a5p4@Ttc36
1.64e-34FFCP PHASE2:Mm9::chr19:12707997..12708015,+#_89ce3a672b79956a06bf520ff4014f65p1@Glyat
1.64e-34FFCP PHASE1:Mm9::chr19:12707997..12708015,+#_89ce3a672b79956a06bf520ff4014f65p1@Glyat
2.61e-34FFCP PHASE2:Mm9::chr11:60622345..60622377,-#_beff25483594889765e9b220b6237560p@chr11:60622345..60622377, -
2.61e-34FFCP PHASE1:Mm9::chr11:60622345..60622377,-#_beff25483594889765e9b220b6237560p@chr11:60622345..60622377, -
8.0e-34FFCP PHASE1:Mm9::chr11:7097807..7097814,+#_305eaeaa39cbb3759c81dd7c0ae7fb86p2@Igfbp1
8.0e-34FFCP PHASE2:Mm9::chr11:7097807..7097814,+#_305eaeaa39cbb3759c81dd7c0ae7fb86p2@Igfbp1
1.27e-33FFCP PHASE2:Mm9::chr13:23931270..23931311,+#_37bbe71c43c11fa8cc2e4cda95fce8ddp2@Slc17a3
1.27e-33FFCP PHASE1:Mm9::chr13:23931270..23931311,+#_37bbe71c43c11fa8cc2e4cda95fce8ddp2@Slc17a3
1.4e-33FFCP PHASE2:Mm9::chr4:95246137..95246153,+#_1e83832cd86a5e9081d46601b819e4c9p3@Fggy
1.4e-33FFCP PHASE1:Mm9::chr4:95246137..95246153,+#_1e83832cd86a5e9081d46601b819e4c9p3@Fggy
1.76e-33FFCP PHASE1:Mm9::chr16:37621995..37622022,-#_ea216204680d0ae4dd15c6b43716a49fp@chr16:37621995..37622022, -
1.76e-33FFCP PHASE2:Mm9::chr16:37621995..37622022,-#_ea216204680d0ae4dd15c6b43716a49fp@chr16:37621995..37622022, -
2.2e-33FFCP PHASE1:Mm9::chr4:96330769..96330789,-#_2857e8268b82c47ea33e80ca20fd4147p2@Cyp2j5
2.2e-33FFCP PHASE2:Mm9::chr4:96330769..96330789,-#_2857e8268b82c47ea33e80ca20fd4147p2@Cyp2j5
2.92e-33FFCP PHASE2:Mm9::chr13:23931467..23931489,+#_693dcf542d8b6b1b656a094b9dcf5d15p3@Slc17a3
2.92e-33FFCP PHASE1:Mm9::chr13:23931467..23931489,+#_693dcf542d8b6b1b656a094b9dcf5d15p3@Slc17a3
5.26e-33FFCP PHASE1:Mm9::chr16:37580223..37580237,+#_feb11aeefc0212b51ac64cf4f05a4ea8p4@Hgd
5.26e-33FFCP PHASE2:Mm9::chr16:37580223..37580237,+#_feb11aeefc0212b51ac64cf4f05a4ea8p4@Hgd
8.68e-33FFCP PHASE1:Mm9::chr1:141398256..141398267,+#_6f1d10692e464ffe3dfe86e683e62aadp3@F13b
8.68e-33FFCP PHASE2:Mm9::chr1:141398256..141398267,+#_6f1d10692e464ffe3dfe86e683e62aadp3@F13b
1.21e-32FFCP PHASE1:Mm9::chr15:82624876..82624892,-#_4d0e266f441dfda43f726c3b2866d03fp5@Cyp2d26
1.21e-32FFCP PHASE2:Mm9::chr15:82624876..82624892,-#_4d0e266f441dfda43f726c3b2866d03fp5@Cyp2d26
1.25e-32FFCP PHASE1:Mm9::chr10:95305558..95305580,-#_5f051457e847cb26bd7a7d45f9a39822p@chr10:95305558..95305580, -
1.25e-32FFCP PHASE2:Mm9::chr10:95305558..95305580,-#_5f051457e847cb26bd7a7d45f9a39822p@chr10:95305558..95305580, -
1.31e-32FFCP PHASE1:Hg19::chr20:42187656..42187673,+#_ec595369afb9bb2178b03d0f243fa9c2p2@SGK2
1.31e-32FFCP PHASE2:Hg19::chr20:42187656..42187673,+#_ec595369afb9bb2178b03d0f243fa9c2p2@SGK2
1.68e-32FFCP PHASE2:Mm9::chr9:44609886..44609901,-#_1254b212dffb673cbf62b7483b6d5bbcp@chr9:44609886..44609901, -
1.68e-32FFCP PHASE1:Mm9::chr9:44609886..44609901,-#_1254b212dffb673cbf62b7483b6d5bbcp@chr9:44609886..44609901, -
1.75e-32FFCP PHASE1:Mm9::chr16:37580298..37580310,+#_b56cd0fc165b68eea05834bd626991a4p3@Hgd
1.75e-32FFCP PHASE2:Mm9::chr16:37580298..37580310,+#_b56cd0fc165b68eea05834bd626991a4p3@Hgd
2.68e-32FFCP PHASE2:Mm9::chr15:9265320..9265378,+#_42ed3c9393a3bf27dc0f9080f02872c9p1@Ugt3a2
2.68e-32FFCP PHASE1:Mm9::chr15:9265320..9265378,+#_42ed3c9393a3bf27dc0f9080f02872c9p1@Ugt3a2
3.54e-32FFCP PHASE1:Mm9::chr4:150283537..150283568,-#_73cafc4438454d47fc81aed624604864p5@Park7
3.54e-32FFCP PHASE2:Mm9::chr4:150283537..150283568,-#_73cafc4438454d47fc81aed624604864p5@Park7
3.97e-32FFCP PHASE2:Mm9::chr9:44609861..44609874,-#_af68a91e77a3bf92268b87a96371e979p@chr9:44609861..44609874, -
3.97e-32FFCP PHASE1:Mm9::chr9:44609861..44609874,-#_af68a91e77a3bf92268b87a96371e979p@chr9:44609861..44609874, -
4.0e-32FFCP PHASE1:Hg19::chr7:44580918..44580934,-#_bfc760c0ba82da154e6cb41a84218eb4p2@NPC1L1
4.0e-32FFCP PHASE2:Hg19::chr7:44580918..44580934,-#_bfc760c0ba82da154e6cb41a84218eb4p2@NPC1L1
5.65e-32FFCP PHASE1:Mm9::chr7:30124235..30124271,-#_9b5bbe5899c0d04147258d27203d4efdp@chr7:30124235..30124271, -
5.65e-32FFCP PHASE2:Mm9::chr7:30124235..30124271,-#_9b5bbe5899c0d04147258d27203d4efdp@chr7:30124235..30124271, -
5.84e-32FFCP PHASE2:Mm9::chr15:99733367..99733388,+#_fbc1375150530ec61e34fa766ce898a9p@chr15:99733367..99733388, +
5.84e-32FFCP PHASE1:Mm9::chr15:99733367..99733388,+#_fbc1375150530ec61e34fa766ce898a9p@chr15:99733367..99733388, +
6.15e-32FFCP PHASE1:Mm9::chr13:58224772..58224789,-#_0b7f277f3a29328f9188d3c9d056c303p@chr13:58224772..58224789, -
6.15e-32FFCP PHASE2:Mm9::chr13:58224772..58224789,-#_0b7f277f3a29328f9188d3c9d056c303p@chr13:58224772..58224789, -
6.95e-32FFCP PHASE2:Hg19::chr7:44580861..44580912,-#_517a0e550923c5ea83e42a6d8e2765e4p1@NPC1L1
6.95e-32FFCP PHASE1:Hg19::chr7:44580861..44580912,-#_517a0e550923c5ea83e42a6d8e2765e4p1@NPC1L1
7.08e-32FFCP PHASE2:Mm9::chr4:140176541..140176565,-#_ee6da282b242b348ebfc825db4427996p@chr4:140176541..140176565, -
7.08e-32FFCP PHASE1:Mm9::chr4:140176541..140176565,-#_ee6da282b242b348ebfc825db4427996p@chr4:140176541..140176565, -
7.56e-32FFCP PHASE1:Mm9::chr6:3938967..3938987,-#_8c3bd24f8a8155ae1b3ef001639ae754p@chr6:3938967..3938987, -
7.56e-32FFCP PHASE2:Mm9::chr6:3938967..3938987,-#_8c3bd24f8a8155ae1b3ef001639ae754p@chr6:3938967..3938987, -
1.06e-31FFCP PHASE1:Mm9::chr16:23029135..23029149,-#_6e3b588716c2938539ee674c90570108p4@Kng2
1.06e-31FFCP PHASE2:Mm9::chr16:23029135..23029149,-#_6e3b588716c2938539ee674c90570108p4@Kng2
1.19e-31FFCP PHASE1:Mm9::chrX:72625134..72625162,-#_be50bb800c5d63e95997c0900dbc1110p1@F8
1.19e-31FFCP PHASE2:Mm9::chrX:72625134..72625162,-#_be50bb800c5d63e95997c0900dbc1110p1@F8
1.91e-31FFCP PHASE1:Mm9::chr11:102268097..102268142,-#_0830b752a49e3209fcacfc5a67349984p4@Slc25a39
1.91e-31FFCP PHASE2:Mm9::chr11:102268097..102268142,-#_0830b752a49e3209fcacfc5a67349984p4@Slc25a39
2.3e-31FFCP PHASE1:Mm9::chr1:177562272..177562282,+#_61816453c9bf07a801ac63d89cb25ff5p4@Kmo
2.3e-31FFCP PHASE2:Mm9::chr1:177562272..177562282,+#_61816453c9bf07a801ac63d89cb25ff5p4@Kmo
2.9e-31FFCP PHASE2:Hg19::chr4:155484103..155484147,+#_9bc89ecbb95d343a327129594c299fa8p2@FGB
2.9e-31FFCP PHASE1:Hg19::chr4:155484103..155484147,+#_9bc89ecbb95d343a327129594c299fa8p2@FGB
3.29e-31FFCP PHASE2:Mm9::chr2:27103824..27103840,-#_dd752fb324520385aee577baa3058ba4p6@Sardh
3.29e-31FFCP PHASE1:Mm9::chr2:27103824..27103840,-#_dd752fb324520385aee577baa3058ba4p6@Sardh
4.81e-31FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_31a9f34be9b81fc44fe5b00cd01b7557p7@HOXA10
4.81e-31FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_31a9f34be9b81fc44fe5b00cd01b7557p7@HOXA10
8.15e-31FFCP PHASE1:Mm9::chr8:25686769..25686840,-#_2e139b488ea673f43dd9fac77b937438p1@Ido2
8.15e-31FFCP PHASE2:Mm9::chr8:25686769..25686840,-#_2e139b488ea673f43dd9fac77b937438p1@Ido2
9.04e-31FFCP PHASE2:Mm9::chr13:94444278..94444281,-#_4ffb10f8ff6a90c87cffad23391c2b5bp3@Bhmt2
9.04e-31FFCP PHASE1:Mm9::chr13:94444278..94444281,-#_4ffb10f8ff6a90c87cffad23391c2b5bp3@Bhmt2
9.75e-31FFCP PHASE1:Mm9::chr5:90897694..90897705,+#_802f0595dda6b0fb41fa28df21a90ec4p@chr5:90897694..90897705, +
9.75e-31FFCP PHASE2:Mm9::chr5:90897694..90897705,+#_802f0595dda6b0fb41fa28df21a90ec4p@chr5:90897694..90897705, +

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