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{{CL
{{CL
|id=CL:0002540
|alt_id=
|name=mesenchymal stem cell of the bone marrow
|namespace=cell
|def="A mesenchymal stem cell that is part of the bone marrow." [GOC:tfm]
|xref=
|is_a=CL:0000134;;CL:0002092
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-02-28T01:47:47Z
|def="A mesenchymal stem cell that is part of the bone marrow." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002540
|is_a=CL:0000134 ;;CL:0002092
|is_obsolete=
|located_in=
|located_in=
|name=mesenchymal stem cell of the bone marrow
|namespace=FANTOM
|obo_creation_date=2011-02-28T01:47:47Z
|part_of=UBERON:0002371
|part_of=UBERON:0002371
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:43, 12 September 2014

Name:mesenchymal stem cell of the bone marrow
Namespace:FANTOM
Definition:"A mesenchymal stem cell that is part of the bone marrow." [GOC:tfm]
Created by:tmeehan
Creation date:2011-02-28T01:47:47Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000134(mesenchymal cell),CL:0002092(bone marrow cell)
part_of:UBERON:0002371(bone marrow)



Children


is a:FF:0000019 (canine mesenchymal stem cell),FF:0000035 (chicken mesenchymal stem cell),FF:0000149 (rat mesenchymal bone cell)
derives from:FF:0000097 (human mesenchymal stem cell of bone marrow sample),FF:0000112 (mouse mesenchymal stem cell of bone marrow sample),FF:0000269 (human mesenchymal precursor cell of bone marrow sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11293-117A6 (Canine Mesenchymal stem cells - bone marrow derived, donor1)
  • 11294-117A7 (Chicken Mesenchymal stem cells - bone marrow derived, donor1)
  • 11296-117A9 (Rat Mesenchymal stem cells - bone marrow derived, donor1)
  • 11370-118A2 (Canine Mesenchymal stem cells - bone marrow derived, donor2)
  • 11373-118A5 (Rat Mesenchymal stem cells - bone marrow derived, donor2)
  • 11442-118I2 (Canine Mesenchymal stem cells - bone marrow derived, donor3)
  • 11445-118I5 (Rat Mesenchymal stem cells - bone marrow derived, donor3)
  • 11464-119B6 (Mesenchymal Stem Cells - bone marrow, donor4)
  • 11536-120A6 (Mesenchymal Stem Cells - bone marrow, donor1)
  • 11616-122A5 (Mesenchymal Stem Cells - bone marrow, donor2)

... further results Mouse (Mus musculus)

  • 11293-117A6 (Canine Mesenchymal stem cells - bone marrow derived, donor1)
  • 11294-117A7 (Chicken Mesenchymal stem cells - bone marrow derived, donor1)
  • 11296-117A9 (Rat Mesenchymal stem cells - bone marrow derived, donor1)
  • 11370-118A2 (Canine Mesenchymal stem cells - bone marrow derived, donor2)
  • 11373-118A5 (Rat Mesenchymal stem cells - bone marrow derived, donor2)
  • 11442-118I2 (Canine Mesenchymal stem cells - bone marrow derived, donor3)
  • 11445-118I5 (Rat Mesenchymal stem cells - bone marrow derived, donor3)
  • 11464-119B6 (Mesenchymal Stem Cells - bone marrow, donor4)
  • 11536-120A6 (Mesenchymal Stem Cells - bone marrow, donor1)
  • 11616-122A5 (Mesenchymal Stem Cells - bone marrow, donor2)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002540 (mesenchymal stem cell of the bone marrow), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.33e-65FFCP PHASE1:Mm9::chr6:48992901..48992908,-#_59d287555f7a2dadecba117a2236ffa7p@chr6:48992901..48992908, -
1.33e-65FFCP PHASE2:Mm9::chr6:48992901..48992908,-#_59d287555f7a2dadecba117a2236ffa7p@chr6:48992901..48992908, -
6.04e-65FFCP PHASE2:Mm9::chr7:53967438..53967455,+#_4dbae73084f0f66069e0f383e4021f32p@chr7:53967438..53967455, +
6.04e-65FFCP PHASE1:Mm9::chr7:53967438..53967455,+#_4dbae73084f0f66069e0f383e4021f32p@chr7:53967438..53967455, +
4.9e-53FFCP PHASE2:Mm9::chr6:49001848..49001855,+#_f6fd074c6e09ffa1c5264664fced008dp@chr6:49001848..49001855, +
4.9e-53FFCP PHASE1:Mm9::chr6:49001848..49001855,+#_f6fd074c6e09ffa1c5264664fced008dp@chr6:49001848..49001855, +
2.47e-52FFCP PHASE2:Mm9::chr8:125950637..125950639,-#_470fbfa0e8ad08247629c3c65737b959p@chr8:125950637..125950639, -
2.47e-52FFCP PHASE1:Mm9::chr8:125950637..125950639,-#_470fbfa0e8ad08247629c3c65737b959p@chr8:125950637..125950639, -
3.69e-52FFCP PHASE2:Mm9::chr11:8475592..8475595,-#_fbdd4d52216c5575419ce87ea3960bcbp@chr11:8475592..8475595, -
3.69e-52FFCP PHASE1:Mm9::chr11:8475592..8475595,-#_fbdd4d52216c5575419ce87ea3960bcbp@chr11:8475592..8475595, -
5.51e-52FFCP PHASE2:Mm9::chr1:122401450..122401455,-#_62b61edd8ae2a2db4709a2219f95dd70p3@Marco
5.51e-52FFCP PHASE1:Mm9::chr8:125956453..125956462,-#_62b61edd8ae2a2db4709a2219f95dd70p@chr8:125956453..125956462, -
5.51e-52FFCP PHASE2:Mm9::chr8:125956453..125956462,-#_62b61edd8ae2a2db4709a2219f95dd70p@chr8:125956453..125956462, -
5.51e-52FFCP PHASE1:Mm9::chr1:122401450..122401455,-#_62b61edd8ae2a2db4709a2219f95dd70p3@Marco
9.76e-45FFCP PHASE2:Hg19::chr7:7222449..7222458,+#_0ab45a4e79614fe3b83177c85f600013p10@C1GALT1
9.76e-45FFCP PHASE1:Hg19::chr7:7222449..7222458,+#_0ab45a4e79614fe3b83177c85f600013p10@C1GALT1
1.18e-44FFCP PHASE2:Mm9::chr4:136452258..136452269,-#_336dd5ebda4d38c009d180d352d256c9p@chr4:136452258..136452269, -
1.18e-44FFCP PHASE2:Mm9::chr6:48995364..48995370,+#_336dd5ebda4d38c009d180d352d256c9p@chr6:48995364..48995370, +
1.18e-44FFCP PHASE1:Mm9::chr4:136452258..136452269,-#_336dd5ebda4d38c009d180d352d256c9p@chr4:136452258..136452269, -
1.18e-44FFCP PHASE1:Mm9::chr6:48997291..48997298,+#_336dd5ebda4d38c009d180d352d256c9p@chr6:48997291..48997298, +
1.18e-44FFCP PHASE1:Mm9::chr6:48995347..48995356,+#_336dd5ebda4d38c009d180d352d256c9p@chr6:48995347..48995356, +
1.18e-44FFCP PHASE2:Mm9::chr6:48997996..48998006,-#_336dd5ebda4d38c009d180d352d256c9p@chr6:48997996..48998006, -
1.18e-44FFCP PHASE1:Mm9::chr6:48997996..48998006,-#_336dd5ebda4d38c009d180d352d256c9p@chr6:48997996..48998006, -
1.18e-44FFCP PHASE2:Mm9::chr6:48997291..48997298,+#_336dd5ebda4d38c009d180d352d256c9p@chr6:48997291..48997298, +
1.18e-44FFCP PHASE1:Mm9::chr6:48995364..48995370,+#_336dd5ebda4d38c009d180d352d256c9p@chr6:48995364..48995370, +
1.18e-44FFCP PHASE2:Mm9::chr6:48995347..48995356,+#_336dd5ebda4d38c009d180d352d256c9p@chr6:48995347..48995356, +
1.66e-44FFCP PHASE1:Mm9::chr6:48997804..48997812,+#_18c36de9fe319a19a7d0d46b75bd60c4p@chr6:48997804..48997812, +
1.66e-44FFCP PHASE2:Mm9::chr6:48997804..48997812,+#_18c36de9fe319a19a7d0d46b75bd60c4p@chr6:48997804..48997812, +
3.27e-44FFCP PHASE1:Mm9::chr6:48995448..48995454,+#_3352ebbc005d0baadc725b1128f71a51p@chr6:48995448..48995454, +
3.27e-44FFCP PHASE2:Mm9::chr6:48995448..48995454,+#_3352ebbc005d0baadc725b1128f71a51p@chr6:48995448..48995454, +
6.41e-44FFCP PHASE2:Mm9::chr8:125956513..125956519,-#_17a25216cfeb433ebba28fd302be4ee2p@chr8:125956513..125956519, -
6.41e-44FFCP PHASE2:Mm9::chr11:69479320..69479327,-#_17a25216cfeb433ebba28fd302be4ee2p@chr11:69479320..69479327, -
6.41e-44FFCP PHASE2:Mm9::chr8:125951622..125951629,-#_17a25216cfeb433ebba28fd302be4ee2p@chr8:125951622..125951629, -
6.41e-44FFCP PHASE1:Mm9::chr8:125951622..125951629,-#_17a25216cfeb433ebba28fd302be4ee2p@chr8:125951622..125951629, -
6.41e-44FFCP PHASE1:Mm9::chr11:69479320..69479327,-#_17a25216cfeb433ebba28fd302be4ee2p@chr11:69479320..69479327, -
6.41e-44FFCP PHASE1:Mm9::chr8:125956513..125956519,-#_17a25216cfeb433ebba28fd302be4ee2p@chr8:125956513..125956519, -
8.97e-44FFCP PHASE1:Mm9::chr8:125956179..125956189,-#_1e2bd49fb0cedd284859225a531c11d5p@chr8:125956179..125956189, -
8.97e-44FFCP PHASE2:Mm9::chr8:125956179..125956189,-#_1e2bd49fb0cedd284859225a531c11d5p@chr8:125956179..125956189, -
8.97e-44FFCP PHASE1:Mm9::chr1:173159866..173159877,-#_1e2bd49fb0cedd284859225a531c11d5p@chr1:173159866..173159877, -
8.97e-44FFCP PHASE1:Mm9::chr8:125952972..125952981,-#_1e2bd49fb0cedd284859225a531c11d5p@chr8:125952972..125952981, -
8.97e-44FFCP PHASE2:Mm9::chr8:125952972..125952981,-#_1e2bd49fb0cedd284859225a531c11d5p@chr8:125952972..125952981, -
8.97e-44FFCP PHASE2:Mm9::chr2:157944705..157944714,-#_1e2bd49fb0cedd284859225a531c11d5p@chr2:157944705..157944714, -
8.97e-44FFCP PHASE1:Mm9::chr2:157944705..157944714,-#_1e2bd49fb0cedd284859225a531c11d5p@chr2:157944705..157944714, -
8.97e-44FFCP PHASE2:Mm9::chr1:173159866..173159877,-#_1e2bd49fb0cedd284859225a531c11d5p@chr1:173159866..173159877, -
8.97e-44FFCP PHASE1:Mm9::chr10:116715054..116715061,-#_1e2bd49fb0cedd284859225a531c11d5p@chr10:116715054..116715061, -
8.97e-44FFCP PHASE2:Mm9::chr10:116715054..116715061,-#_1e2bd49fb0cedd284859225a531c11d5p@chr10:116715054..116715061, -
1.25e-43FFCP PHASE1:Mm9::chr17:57501115..57501124,+#_a58ab18369f5c5e9fecfb3a3c0ae4521p@chr17:57501115..57501124, +
1.25e-43FFCP PHASE1:Mm9::chr8:125953346..125953349,-#_a58ab18369f5c5e9fecfb3a3c0ae4521p@chr8:125953346..125953349, -
1.25e-43FFCP PHASE2:Mm9::chr8:125953346..125953349,-#_a58ab18369f5c5e9fecfb3a3c0ae4521p@chr8:125953346..125953349, -
1.25e-43FFCP PHASE2:Mm9::chr17:57501115..57501124,+#_a58ab18369f5c5e9fecfb3a3c0ae4521p@chr17:57501115..57501124, +
1.75e-43FFCP PHASE1:Mm9::chr6:122805870..122805874,-#_692606ee02f707981a5fd033301a3381p@chr6:122805870..122805874, -
1.75e-43FFCP PHASE2:Mm9::chr6:122805870..122805874,-#_692606ee02f707981a5fd033301a3381p@chr6:122805870..122805874, -
1.7e-39FFCP PHASE1:Mm9::chr8:124830874..124830875,+#_017b0e3ad086f7b475c264e711707a4fp@chr8:124830874..124830875, +
1.7e-39FFCP PHASE2:Mm9::chr8:124830874..124830875,+#_017b0e3ad086f7b475c264e711707a4fp@chr8:124830874..124830875, +
4.15e-39FFCP PHASE2:Mm9::chr10:93014574..93014575,+#_ec138a7d43bd5c75b0c92ef6d1a41f35p@chr10:93014574..93014575, +
4.15e-39FFCP PHASE1:Mm9::chr10:93014574..93014575,+#_ec138a7d43bd5c75b0c92ef6d1a41f35p@chr10:93014574..93014575, +
1.17e-38FFCP PHASE1:Mm9::chr6:48992765..48992800,+#_a30c777c2f3de9649a4f1fa1c410fa2ep@chr6:48992765..48992800, +
1.17e-38FFCP PHASE1:Mm9::chr6:48992877..48992890,-#_a30c777c2f3de9649a4f1fa1c410fa2ep@chr6:48992877..48992890, -
1.17e-38FFCP PHASE2:Mm9::chr6:48992765..48992800,+#_a30c777c2f3de9649a4f1fa1c410fa2ep@chr6:48992765..48992800, +
1.17e-38FFCP PHASE2:Mm9::chr6:48992877..48992890,-#_a30c777c2f3de9649a4f1fa1c410fa2ep@chr6:48992877..48992890, -
2.79e-38FFCP PHASE2:Mm9::chr8:125952310..125952320,+#_d6e84274fbc596046f820a3ca32921b5p@chr8:125952310..125952320, +
2.79e-38FFCP PHASE1:Mm9::chr8:125952310..125952320,+#_d6e84274fbc596046f820a3ca32921b5p@chr8:125952310..125952320, +
3.73e-38FFCP PHASE2:Mm9::chr8:125951545..125951559,-#_93fb6597e40ef81de1fa66652fe72908p@chr8:125951545..125951559, -
3.73e-38FFCP PHASE1:Mm9::chr8:125951545..125951559,-#_93fb6597e40ef81de1fa66652fe72908p@chr8:125951545..125951559, -
3.73e-38FFCP PHASE1:Mm9::chr19:3941548..3941557,+#_93fb6597e40ef81de1fa66652fe72908p@chr19:3941548..3941557, +
3.73e-38FFCP PHASE2:Mm9::chr8:125952002..125952012,-#_93fb6597e40ef81de1fa66652fe72908p@chr8:125952002..125952012, -
3.73e-38FFCP PHASE1:Mm9::chr8:125952002..125952012,-#_93fb6597e40ef81de1fa66652fe72908p@chr8:125952002..125952012, -
3.73e-38FFCP PHASE2:Mm9::chr19:3941548..3941557,+#_93fb6597e40ef81de1fa66652fe72908p@chr19:3941548..3941557, +
6.64e-38FFCP PHASE1:Mm9::chr6:82983194..82983205,-#_716dcb4d47e687853dccadc63bf7879fp@chr6:82983194..82983205, -
6.64e-38FFCP PHASE2:Mm9::chr6:82983194..82983205,-#_716dcb4d47e687853dccadc63bf7879fp@chr6:82983194..82983205, -
6.64e-38FFCP PHASE1:Mm9::chr8:125956332..125956339,-#_716dcb4d47e687853dccadc63bf7879fp@chr8:125956332..125956339, -
6.64e-38FFCP PHASE2:Mm9::chr8:125956332..125956339,-#_716dcb4d47e687853dccadc63bf7879fp@chr8:125956332..125956339, -
6.64e-38FFCP PHASE2:Mm9::chr8:125951458..125951466,-#_716dcb4d47e687853dccadc63bf7879fp@chr8:125951458..125951466, -
6.64e-38FFCP PHASE1:Mm9::chr8:125951458..125951466,-#_716dcb4d47e687853dccadc63bf7879fp@chr8:125951458..125951466, -
8.86e-38FFCP PHASE1:Mm9::chr17:45733632..45733648,-#_852d2c6f0668bebb1b22c402187392e0p@chr17:45733632..45733648, -
8.86e-38FFCP PHASE2:Mm9::chr17:45733632..45733648,-#_852d2c6f0668bebb1b22c402187392e0p@chr17:45733632..45733648, -
3.67e-34FFCP PHASE2:Mm9::chr3:87067576..87067584,-#_1d9a8d44fbab1a21820075b47284aa4dp3@Fcrls
3.67e-34FFCP PHASE2:Mm9::chr6:48992884..48992893,+#_1d9a8d44fbab1a21820075b47284aa4dp@chr6:48992884..48992893, +
3.67e-34FFCP PHASE1:Mm9::chr4:136436677..136436688,-#_1d9a8d44fbab1a21820075b47284aa4dp@chr4:136436677..136436688, -
3.67e-34FFCP PHASE2:Mm9::chr6:48997958..48997979,-#_1d9a8d44fbab1a21820075b47284aa4dp@chr6:48997958..48997979, -
3.67e-34FFCP PHASE2:Mm9::chr3:87067625..87067636,-#_1d9a8d44fbab1a21820075b47284aa4dp2@Fcrls
3.67e-34FFCP PHASE1:Mm9::chr4:136452194..136452198,-#_1d9a8d44fbab1a21820075b47284aa4dp@chr4:136452194..136452198, -
3.67e-34FFCP PHASE1:Mm9::chr3:87067576..87067584,-#_1d9a8d44fbab1a21820075b47284aa4dp3@Fcrls
3.67e-34FFCP PHASE1:Mm9::chr6:48997958..48997979,-#_1d9a8d44fbab1a21820075b47284aa4dp@chr6:48997958..48997979, -
3.67e-34FFCP PHASE2:Mm9::chr6:49006588..49006597,+#_1d9a8d44fbab1a21820075b47284aa4dp@chr6:49006588..49006597, +
3.67e-34FFCP PHASE1:Mm9::chr6:49006588..49006597,+#_1d9a8d44fbab1a21820075b47284aa4dp@chr6:49006588..49006597, +
3.67e-34FFCP PHASE1:Mm9::chrX:20505898..20505909,-#_1d9a8d44fbab1a21820075b47284aa4dp@chrX:20505898..20505909, -
3.67e-34FFCP PHASE2:Mm9::chr4:136436677..136436688,-#_1d9a8d44fbab1a21820075b47284aa4dp@chr4:136436677..136436688, -
3.67e-34FFCP PHASE1:Mm9::chr3:87067625..87067636,-#_1d9a8d44fbab1a21820075b47284aa4dp2@Fcrls
3.67e-34FFCP PHASE2:Mm9::chrX:20505898..20505909,-#_1d9a8d44fbab1a21820075b47284aa4dp@chrX:20505898..20505909, -
3.67e-34FFCP PHASE2:Mm9::chr4:136452194..136452198,-#_1d9a8d44fbab1a21820075b47284aa4dp@chr4:136452194..136452198, -
3.67e-34FFCP PHASE1:Mm9::chr6:48992884..48992893,+#_1d9a8d44fbab1a21820075b47284aa4dp@chr6:48992884..48992893, +
4.27e-34FFCP PHASE2:Hg19::chr20:49963208..49963211,-#_a142fd5347312a18c29af0043a6921e6p@chr20:49963208..49963211, -
4.27e-34FFCP PHASE1:Hg19::chr20:49963208..49963211,-#_a142fd5347312a18c29af0043a6921e6p@chr20:49963208..49963211, -
5.98e-34FFCP PHASE2:Hg19::chrX:11455926..11455931,+#_4bdcca92325bbde39db293e1c540fc8cp@chrX:11455926..11455931, +
5.98e-34FFCP PHASE1:Hg19::chrX:11455926..11455931,+#_4bdcca92325bbde39db293e1c540fc8cp@chrX:11455926..11455931, +
6.12e-34FFCP PHASE2:Mm9::chr11:69478859..69478867,-#_ef2f9bf6ce2706a1720e5a5b3dbc9f91p@chr11:69478859..69478867, -
6.12e-34FFCP PHASE1:Mm9::chr5:24046758..24046768,-#_ef2f9bf6ce2706a1720e5a5b3dbc9f91p3@Asb10
6.12e-34FFCP PHASE1:Mm9::chr11:69478859..69478867,-#_ef2f9bf6ce2706a1720e5a5b3dbc9f91p@chr11:69478859..69478867, -
6.12e-34FFCP PHASE2:Mm9::chr5:24046758..24046768,-#_ef2f9bf6ce2706a1720e5a5b3dbc9f91p3@Asb10

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