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{{CL
{{CL
|id=CL:0002092
|alt_id=
|name=bone marrow cell
|namespace=cell
|def="A cell found in the bone marrow. This can include fibroblasts, macrophages, adipocytes, osteoblasts, osteoclasts, endothelial cells and hematopoietic cells." [GOC:tfm, ISBN:0618947256]
|xref=BTO:0004850;;FMA:83621
|is_a=CL:0002320
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-07-22T04:48:15Z
|def="A cell found in the bone marrow. This can include fibroblasts, macrophages, adipocytes, osteoblasts, osteoclasts, endothelial cells and hematopoietic cells." [GOC:tfm, ISBN:0618947256]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002092
|is_a=CL:0001035
|is_obsolete=
|located_in=
|located_in=
|name=bone marrow cell
|namespace=FANTOM
|obo_creation_date=2010-07-22T04:48:15Z
|part_of=UBERON:0002371
|part_of=UBERON:0002371
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0004850;;FMA:83621
}}
}}

Latest revision as of 16:40, 12 September 2014

Name:bone marrow cell
Namespace:FANTOM
Definition:"A cell found in the bone marrow. This can include fibroblasts, macrophages, adipocytes, osteoblasts, osteoclasts, endothelial cells and hematopoietic cells." [GOC:tfm, ISBN:0618947256]
Xrefs:
links:

BTO:0004850

FMA:83621
Created by:tmeehan
Creation date:2010-07-22T04:48:15Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0001035(bone cell)
part_of:UBERON:0002371(bone marrow)



Children


is a:CL:0002540 (mesenchymal stem cell of the bone marrow),CL:1001610 (bone marrow hematopoietic cell)
derives from:FF:0000020 (human CD133-positive progenitor cell- bone marrow derived sample),FF:0100583 (bone marrow cancer cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002092 (bone marrow cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.33e-65FFCP PHASE1:Mm9::chr6:48992901..48992908,-#_d3a7586279dae6c3db5fa1e530b6b4c1p@chr6:48992901..48992908, -
1.33e-65FFCP PHASE2:Mm9::chr6:48992901..48992908,-#_d3a7586279dae6c3db5fa1e530b6b4c1p@chr6:48992901..48992908, -
6.04e-65FFCP PHASE1:Mm9::chr7:53967438..53967455,+#_8c4dc86b79c4b671b951a496ed34a4dbp@chr7:53967438..53967455, +
6.04e-65FFCP PHASE2:Mm9::chr7:53967438..53967455,+#_8c4dc86b79c4b671b951a496ed34a4dbp@chr7:53967438..53967455, +
4.9e-53FFCP PHASE1:Mm9::chr6:49001848..49001855,+#_5b3721343dc9890e60e32c0dd45759c9p@chr6:49001848..49001855, +
4.9e-53FFCP PHASE2:Mm9::chr6:49001848..49001855,+#_5b3721343dc9890e60e32c0dd45759c9p@chr6:49001848..49001855, +
2.47e-52FFCP PHASE2:Mm9::chr8:125950637..125950639,-#_7777d37304d68d582cb0a925a7d7a599p@chr8:125950637..125950639, -
2.47e-52FFCP PHASE1:Mm9::chr8:125950637..125950639,-#_7777d37304d68d582cb0a925a7d7a599p@chr8:125950637..125950639, -
3.69e-52FFCP PHASE2:Mm9::chr11:8475592..8475595,-#_52ac43dd35450c9e37b5d9f3bbde26eep@chr11:8475592..8475595, -
3.69e-52FFCP PHASE1:Mm9::chr11:8475592..8475595,-#_52ac43dd35450c9e37b5d9f3bbde26eep@chr11:8475592..8475595, -
5.51e-52FFCP PHASE2:Mm9::chr8:125956453..125956462,-#_855856eefd78e41399f840e86091e951p@chr8:125956453..125956462, -
5.51e-52FFCP PHASE1:Mm9::chr1:122401450..122401455,-#_855856eefd78e41399f840e86091e951p3@Marco
5.51e-52FFCP PHASE2:Mm9::chr1:122401450..122401455,-#_855856eefd78e41399f840e86091e951p3@Marco
5.51e-52FFCP PHASE1:Mm9::chr8:125956453..125956462,-#_855856eefd78e41399f840e86091e951p@chr8:125956453..125956462, -
1.18e-44FFCP PHASE1:Mm9::chr6:48995364..48995370,+#_9b40b73db33fea8e5ba55b4297cbe925p@chr6:48995364..48995370, +
1.18e-44FFCP PHASE2:Mm9::chr6:48997996..48998006,-#_9b40b73db33fea8e5ba55b4297cbe925p@chr6:48997996..48998006, -
1.18e-44FFCP PHASE2:Mm9::chr6:48997291..48997298,+#_9b40b73db33fea8e5ba55b4297cbe925p@chr6:48997291..48997298, +
1.18e-44FFCP PHASE2:Mm9::chr6:48995347..48995356,+#_9b40b73db33fea8e5ba55b4297cbe925p@chr6:48995347..48995356, +
1.18e-44FFCP PHASE2:Mm9::chr4:136452258..136452269,-#_9b40b73db33fea8e5ba55b4297cbe925p@chr4:136452258..136452269, -
1.18e-44FFCP PHASE2:Mm9::chr6:48995364..48995370,+#_9b40b73db33fea8e5ba55b4297cbe925p@chr6:48995364..48995370, +
1.18e-44FFCP PHASE1:Mm9::chr4:136452258..136452269,-#_9b40b73db33fea8e5ba55b4297cbe925p@chr4:136452258..136452269, -
1.18e-44FFCP PHASE1:Mm9::chr6:48997291..48997298,+#_9b40b73db33fea8e5ba55b4297cbe925p@chr6:48997291..48997298, +
1.18e-44FFCP PHASE1:Mm9::chr6:48995347..48995356,+#_9b40b73db33fea8e5ba55b4297cbe925p@chr6:48995347..48995356, +
1.18e-44FFCP PHASE1:Mm9::chr6:48997996..48998006,-#_9b40b73db33fea8e5ba55b4297cbe925p@chr6:48997996..48998006, -
1.66e-44FFCP PHASE2:Mm9::chr6:48997804..48997812,+#_22b6c32c78476f8ee918815d739b3608p@chr6:48997804..48997812, +
1.66e-44FFCP PHASE1:Mm9::chr6:48997804..48997812,+#_22b6c32c78476f8ee918815d739b3608p@chr6:48997804..48997812, +
3.27e-44FFCP PHASE2:Mm9::chr6:48995448..48995454,+#_6ffbda193d6f5afa022f61a7e41e2428p@chr6:48995448..48995454, +
3.27e-44FFCP PHASE1:Mm9::chr6:48995448..48995454,+#_6ffbda193d6f5afa022f61a7e41e2428p@chr6:48995448..48995454, +
6.41e-44FFCP PHASE1:Mm9::chr8:125956513..125956519,-#_3b56ee59800fabe4f19aa55dffbcacfdp@chr8:125956513..125956519, -
6.41e-44FFCP PHASE2:Mm9::chr8:125956513..125956519,-#_3b56ee59800fabe4f19aa55dffbcacfdp@chr8:125956513..125956519, -
6.41e-44FFCP PHASE2:Mm9::chr11:69479320..69479327,-#_3b56ee59800fabe4f19aa55dffbcacfdp@chr11:69479320..69479327, -
6.41e-44FFCP PHASE1:Mm9::chr11:69479320..69479327,-#_3b56ee59800fabe4f19aa55dffbcacfdp@chr11:69479320..69479327, -
6.41e-44FFCP PHASE1:Mm9::chr8:125951622..125951629,-#_3b56ee59800fabe4f19aa55dffbcacfdp@chr8:125951622..125951629, -
6.41e-44FFCP PHASE2:Mm9::chr8:125951622..125951629,-#_3b56ee59800fabe4f19aa55dffbcacfdp@chr8:125951622..125951629, -
8.97e-44FFCP PHASE2:Mm9::chr1:173159866..173159877,-#_c4bb3e8a4104668f92808da8b7a555f3p@chr1:173159866..173159877, -
8.97e-44FFCP PHASE1:Mm9::chr8:125956179..125956189,-#_c4bb3e8a4104668f92808da8b7a555f3p@chr8:125956179..125956189, -
8.97e-44FFCP PHASE2:Mm9::chr8:125956179..125956189,-#_c4bb3e8a4104668f92808da8b7a555f3p@chr8:125956179..125956189, -
8.97e-44FFCP PHASE2:Mm9::chr2:157944705..157944714,-#_c4bb3e8a4104668f92808da8b7a555f3p@chr2:157944705..157944714, -
8.97e-44FFCP PHASE1:Mm9::chr1:173159866..173159877,-#_c4bb3e8a4104668f92808da8b7a555f3p@chr1:173159866..173159877, -
8.97e-44FFCP PHASE1:Mm9::chr8:125952972..125952981,-#_c4bb3e8a4104668f92808da8b7a555f3p@chr8:125952972..125952981, -
8.97e-44FFCP PHASE2:Mm9::chr8:125952972..125952981,-#_c4bb3e8a4104668f92808da8b7a555f3p@chr8:125952972..125952981, -
8.97e-44FFCP PHASE1:Mm9::chr10:116715054..116715061,-#_c4bb3e8a4104668f92808da8b7a555f3p@chr10:116715054..116715061, -
8.97e-44FFCP PHASE2:Mm9::chr10:116715054..116715061,-#_c4bb3e8a4104668f92808da8b7a555f3p@chr10:116715054..116715061, -
8.97e-44FFCP PHASE1:Mm9::chr2:157944705..157944714,-#_c4bb3e8a4104668f92808da8b7a555f3p@chr2:157944705..157944714, -
1.25e-43FFCP PHASE2:Mm9::chr8:125953346..125953349,-#_9fd1f5e8102b1c579faafd13b278afd8p@chr8:125953346..125953349, -
1.25e-43FFCP PHASE2:Mm9::chr17:57501115..57501124,+#_9fd1f5e8102b1c579faafd13b278afd8p@chr17:57501115..57501124, +
1.25e-43FFCP PHASE1:Mm9::chr8:125953346..125953349,-#_9fd1f5e8102b1c579faafd13b278afd8p@chr8:125953346..125953349, -
1.25e-43FFCP PHASE1:Mm9::chr17:57501115..57501124,+#_9fd1f5e8102b1c579faafd13b278afd8p@chr17:57501115..57501124, +
1.75e-43FFCP PHASE1:Mm9::chr6:122805870..122805874,-#_2e0f47b012747b97ebc2848be2a20a0ep@chr6:122805870..122805874, -
1.75e-43FFCP PHASE2:Mm9::chr6:122805870..122805874,-#_2e0f47b012747b97ebc2848be2a20a0ep@chr6:122805870..122805874, -
1.7e-39FFCP PHASE1:Mm9::chr8:124830874..124830875,+#_baa57e674c47201d260d47f8f93353e0p@chr8:124830874..124830875, +
1.7e-39FFCP PHASE2:Mm9::chr8:124830874..124830875,+#_baa57e674c47201d260d47f8f93353e0p@chr8:124830874..124830875, +
4.15e-39FFCP PHASE2:Mm9::chr10:93014574..93014575,+#_cfe595c953c5b1622ba32e2199a84830p@chr10:93014574..93014575, +
4.15e-39FFCP PHASE1:Mm9::chr10:93014574..93014575,+#_cfe595c953c5b1622ba32e2199a84830p@chr10:93014574..93014575, +
1.17e-38FFCP PHASE2:Mm9::chr6:48992765..48992800,+#_fb93638c630a679f208a0f9d1a4d74d2p@chr6:48992765..48992800, +
1.17e-38FFCP PHASE2:Mm9::chr6:48992877..48992890,-#_fb93638c630a679f208a0f9d1a4d74d2p@chr6:48992877..48992890, -
1.17e-38FFCP PHASE1:Mm9::chr6:48992765..48992800,+#_fb93638c630a679f208a0f9d1a4d74d2p@chr6:48992765..48992800, +
1.17e-38FFCP PHASE1:Mm9::chr6:48992877..48992890,-#_fb93638c630a679f208a0f9d1a4d74d2p@chr6:48992877..48992890, -
2.79e-38FFCP PHASE1:Mm9::chr8:125952310..125952320,+#_dd424ca65cd4c1f23d66c256116659e9p@chr8:125952310..125952320, +
2.79e-38FFCP PHASE2:Mm9::chr8:125952310..125952320,+#_dd424ca65cd4c1f23d66c256116659e9p@chr8:125952310..125952320, +
3.73e-38FFCP PHASE2:Mm9::chr8:125952002..125952012,-#_648c4123fc4d52681daefa08e74601adp@chr8:125952002..125952012, -
3.73e-38FFCP PHASE1:Mm9::chr8:125951545..125951559,-#_648c4123fc4d52681daefa08e74601adp@chr8:125951545..125951559, -
3.73e-38FFCP PHASE2:Mm9::chr8:125951545..125951559,-#_648c4123fc4d52681daefa08e74601adp@chr8:125951545..125951559, -
3.73e-38FFCP PHASE1:Mm9::chr19:3941548..3941557,+#_648c4123fc4d52681daefa08e74601adp@chr19:3941548..3941557, +
3.73e-38FFCP PHASE2:Mm9::chr19:3941548..3941557,+#_648c4123fc4d52681daefa08e74601adp@chr19:3941548..3941557, +
3.73e-38FFCP PHASE1:Mm9::chr8:125952002..125952012,-#_648c4123fc4d52681daefa08e74601adp@chr8:125952002..125952012, -
6.64e-38FFCP PHASE1:Mm9::chr8:125951458..125951466,-#_720c8a3f2d1da633cbf148d2e77193fep@chr8:125951458..125951466, -
6.64e-38FFCP PHASE2:Mm9::chr8:125951458..125951466,-#_720c8a3f2d1da633cbf148d2e77193fep@chr8:125951458..125951466, -
6.64e-38FFCP PHASE1:Mm9::chr6:82983194..82983205,-#_720c8a3f2d1da633cbf148d2e77193fep@chr6:82983194..82983205, -
6.64e-38FFCP PHASE2:Mm9::chr6:82983194..82983205,-#_720c8a3f2d1da633cbf148d2e77193fep@chr6:82983194..82983205, -
6.64e-38FFCP PHASE1:Mm9::chr8:125956332..125956339,-#_720c8a3f2d1da633cbf148d2e77193fep@chr8:125956332..125956339, -
6.64e-38FFCP PHASE2:Mm9::chr8:125956332..125956339,-#_720c8a3f2d1da633cbf148d2e77193fep@chr8:125956332..125956339, -
8.86e-38FFCP PHASE2:Mm9::chr17:45733632..45733648,-#_0411044200b7041daddd4d2bf20f4935p@chr17:45733632..45733648, -
8.86e-38FFCP PHASE1:Mm9::chr17:45733632..45733648,-#_0411044200b7041daddd4d2bf20f4935p@chr17:45733632..45733648, -
3.67e-34FFCP PHASE2:Mm9::chr3:87067576..87067584,-#_c990cbdd3fa69491ef3ccc0e41d20124p3@Fcrls
3.67e-34FFCP PHASE2:Mm9::chrX:20505898..20505909,-#_c990cbdd3fa69491ef3ccc0e41d20124p@chrX:20505898..20505909, -
3.67e-34FFCP PHASE2:Mm9::chr4:136452194..136452198,-#_c990cbdd3fa69491ef3ccc0e41d20124p@chr4:136452194..136452198, -
3.67e-34FFCP PHASE1:Mm9::chr4:136436677..136436688,-#_c990cbdd3fa69491ef3ccc0e41d20124p@chr4:136436677..136436688, -
3.67e-34FFCP PHASE2:Mm9::chr3:87067625..87067636,-#_c990cbdd3fa69491ef3ccc0e41d20124p2@Fcrls
3.67e-34FFCP PHASE1:Mm9::chr4:136452194..136452198,-#_c990cbdd3fa69491ef3ccc0e41d20124p@chr4:136452194..136452198, -
3.67e-34FFCP PHASE1:Mm9::chr3:87067576..87067584,-#_c990cbdd3fa69491ef3ccc0e41d20124p3@Fcrls
3.67e-34FFCP PHASE1:Mm9::chr6:48997958..48997979,-#_c990cbdd3fa69491ef3ccc0e41d20124p@chr6:48997958..48997979, -
3.67e-34FFCP PHASE2:Mm9::chr6:48992884..48992893,+#_c990cbdd3fa69491ef3ccc0e41d20124p@chr6:48992884..48992893, +
3.67e-34FFCP PHASE1:Mm9::chr6:49006588..49006597,+#_c990cbdd3fa69491ef3ccc0e41d20124p@chr6:49006588..49006597, +
3.67e-34FFCP PHASE1:Mm9::chr3:87067625..87067636,-#_c990cbdd3fa69491ef3ccc0e41d20124p2@Fcrls
3.67e-34FFCP PHASE2:Mm9::chr6:48997958..48997979,-#_c990cbdd3fa69491ef3ccc0e41d20124p@chr6:48997958..48997979, -
3.67e-34FFCP PHASE1:Mm9::chrX:20505898..20505909,-#_c990cbdd3fa69491ef3ccc0e41d20124p@chrX:20505898..20505909, -
3.67e-34FFCP PHASE2:Mm9::chr6:49006588..49006597,+#_c990cbdd3fa69491ef3ccc0e41d20124p@chr6:49006588..49006597, +
3.67e-34FFCP PHASE2:Mm9::chr4:136436677..136436688,-#_c990cbdd3fa69491ef3ccc0e41d20124p@chr4:136436677..136436688, -
3.67e-34FFCP PHASE1:Mm9::chr6:48992884..48992893,+#_c990cbdd3fa69491ef3ccc0e41d20124p@chr6:48992884..48992893, +
6.12e-34FFCP PHASE2:Mm9::chr5:24046758..24046768,-#_d143cf1f740bf0fb79efc2a1c6083da1p3@Asb10
6.12e-34FFCP PHASE2:Mm9::chr11:69478859..69478867,-#_d143cf1f740bf0fb79efc2a1c6083da1p@chr11:69478859..69478867, -
6.12e-34FFCP PHASE1:Mm9::chr11:69478859..69478867,-#_d143cf1f740bf0fb79efc2a1c6083da1p@chr11:69478859..69478867, -
6.12e-34FFCP PHASE1:Mm9::chr5:24046758..24046768,-#_d143cf1f740bf0fb79efc2a1c6083da1p3@Asb10
1.31e-33FFCP PHASE1:Mm9::chr1:173164773..173164781,-#_c2cc61e7974f873eb55f156bbcd3b248p3@Fcer1g
1.31e-33FFCP PHASE2:Mm9::chr1:173164773..173164781,-#_c2cc61e7974f873eb55f156bbcd3b248p3@Fcer1g
1.69e-33FFCP PHASE2:Mm9::chr14:73572700..73572716,+#_e77076e0fdb83a602ca815ce602b620ep@chr14:73572700..73572716, +
1.69e-33FFCP PHASE1:Mm9::chr14:73572700..73572716,+#_e77076e0fdb83a602ca815ce602b620ep@chr14:73572700..73572716, +
3.61e-33FFCP PHASE2:Mm9::chr19:11679318..11679323,-#_529ef28c86f2aca88f43c12532d11e61p6@Ms4a6d
3.61e-33FFCP PHASE1:Mm9::chr19:11679318..11679323,-#_529ef28c86f2aca88f43c12532d11e61p6@Ms4a6d

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