Personal tools

CL:0000558: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:0000558
|alt_id=
|name=reticulocyte
|namespace=cell;;efo
|def="An immature erythrocyte that changes the protein composition of its plasma membrane by exosome formation and extrusion. The types of protein removed differ between species though removal of the transferrin receptor is apparent in mammals and birds." [GOC:add, GOC:tfm, PMID:15946868, PMID:2037622]
|xref=BTO:0001173
|is_a=CL:0000764
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An immature erythrocyte that changes the protein composition of its plasma membrane by exosome formation and extrusion. The types of protein removed differ between species though removal of the transferrin receptor is apparent in mammals and birds." [GOC:add, GOC:tfm, PMID:15946868, PMID:2037622]
|subset=
|derives_from=
|derives_from=
|develops_from=CL:0000552
|develops_from=CL:0000552
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000558
|is_a=CL:0000764
|is_obsolete=
|located_in=
|located_in=
|name=reticulocyte
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0001173
}}
}}

Latest revision as of 16:35, 12 September 2014

Name:reticulocyte
Namespace:FANTOM
Definition:"An immature erythrocyte that changes the protein composition of its plasma membrane by exosome formation and extrusion. The types of protein removed differ between species though removal of the transferrin receptor is apparent in mammals and birds." [GOC:add, GOC:tfm, PMID:15946868, PMID:2037622]
Xrefs:
links:
BTO:0001173


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000764(erythroid lineage cell)
develops_from:CL:0000552(orthochromatic erythroblast)



Children


derives from:FF:0011169 (human reticulocyte sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11931-125I5 (CD34 cells differentiated to erythrocyte lineage, biol_ rep1)
  • 11932-125I6 (CD34 cells differentiated to erythrocyte lineage, biol_ rep2)

Mouse (Mus musculus)

  • 11931-125I5 (CD34 cells differentiated to erythrocyte lineage, biol_ rep1)
  • 11932-125I6 (CD34 cells differentiated to erythrocyte lineage, biol_ rep2)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000558 (reticulocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE2:Hg19::chr11:5247692..5247701,-#_52b620a34b25e84ba426b68b5ad61be6p@chr11:5247692..5247701, -
3.29e-195FFCP PHASE1:Hg19::chr17:42392517..42392522,+#_52b620a34b25e84ba426b68b5ad61be6p17@RUNDC3A
3.29e-195FFCP PHASE2:Hg19::chr6:10585684..10585689,+#_52b620a34b25e84ba426b68b5ad61be6p37@GCNT2
3.29e-195FFCP PHASE1:Hg19::chr2:62801311..62801318,+#_52b620a34b25e84ba426b68b5ad61be6p@chr2:62801311..62801318, +
3.29e-195FFCP PHASE1:Hg19::chr11:5248435..5248444,+#_52b620a34b25e84ba426b68b5ad61be6p@chr11:5248435..5248444, +
3.29e-195FFCP PHASE1:Hg19::chr2:87816262..87816269,+#_52b620a34b25e84ba426b68b5ad61be6p@chr2:87816262..87816269, +
3.29e-195FFCP PHASE2:Hg19::chr11:66676050..66676060,+#_52b620a34b25e84ba426b68b5ad61be6p@chr11:66676050..66676060, +
3.29e-195FFCP PHASE1:Hg19::chr22:30680245..30680254,-#_52b620a34b25e84ba426b68b5ad61be6p@chr22:30680245..30680254, -
3.29e-195FFCP PHASE2:Hg19::chr4:26378984..26378987,+#_52b620a34b25e84ba426b68b5ad61be6p@chr4:26378984..26378987, +
3.29e-195FFCP PHASE2:Hg19::chr3:49726589..49726592,+#_52b620a34b25e84ba426b68b5ad61be6p7@RNF123
3.29e-195FFCP PHASE2:Hg19::chr11:5255612..5255613,-#_52b620a34b25e84ba426b68b5ad61be6p10@HBD
3.29e-195FFCP PHASE1:Hg19::chr16:67228546..67228549,+#_52b620a34b25e84ba426b68b5ad61be6p@chr16:67228546..67228549, +
3.29e-195FFCP PHASE1:Hg19::chr11:5247730..5247736,-#_52b620a34b25e84ba426b68b5ad61be6p@chr11:5247730..5247736, -
3.29e-195FFCP PHASE1:Hg19::chr8:138915590..138915591,+#_52b620a34b25e84ba426b68b5ad61be6p@chr8:138915590..138915591, +
3.29e-195FFCP PHASE1:Hg19::chr21:27203678..27203684,+#_52b620a34b25e84ba426b68b5ad61be6p@chr21:27203678..27203684, +
3.29e-195FFCP PHASE2:Hg19::chr2:112191654..112191660,-#_52b620a34b25e84ba426b68b5ad61be6p@chr2:112191654..112191660, -
3.29e-195FFCP PHASE2:Hg19::chr11:29581179..29581180,+#_52b620a34b25e84ba426b68b5ad61be6p@chr11:29581179..29581180, +
3.29e-195FFCP PHASE1:Hg19::chr20:24432163..24432165,+#_52b620a34b25e84ba426b68b5ad61be6p@chr20:24432163..24432165, +
3.29e-195FFCP PHASE1:Hg19::chr11:57415965..57415973,+#_52b620a34b25e84ba426b68b5ad61be6p5@CLP1
3.29e-195FFCP PHASE2:Hg19::chr13:78682773..78682778,+#_52b620a34b25e84ba426b68b5ad61be6p@chr13:78682773..78682778, +
3.29e-195FFCP PHASE2:Hg19::chr11:57415965..57415973,+#_52b620a34b25e84ba426b68b5ad61be6p5@CLP1
3.29e-195FFCP PHASE1:Hg19::chr8:63838198..63838201,+#_52b620a34b25e84ba426b68b5ad61be6p@chr8:63838198..63838201, +
3.29e-195FFCP PHASE2:Hg19::chr14:55799575..55799582,+#_52b620a34b25e84ba426b68b5ad61be6p@chr14:55799575..55799582, +
3.29e-195FFCP PHASE2:Hg19::chr4:160049078..160049079,+#_52b620a34b25e84ba426b68b5ad61be6p@chr4:160049078..160049079, +
3.29e-195FFCP PHASE1:Hg19::chr13:78682773..78682778,+#_52b620a34b25e84ba426b68b5ad61be6p@chr13:78682773..78682778, +
3.29e-195FFCP PHASE2:Hg19::chr1:25598961..25598966,+#_52b620a34b25e84ba426b68b5ad61be6p5@RHD
3.29e-195FFCP PHASE2:Hg19::chr16:227522..227524,+#_52b620a34b25e84ba426b68b5ad61be6p@chr16:227522..227524, +
3.29e-195FFCP PHASE1:Hg19::chr1:95582484..95582492,+#_52b620a34b25e84ba426b68b5ad61be6p10@TMEM56
3.29e-195FFCP PHASE1:Hg19::chr1:25598993..25599007,+#_52b620a34b25e84ba426b68b5ad61be6p1@RHD
3.29e-195FFCP PHASE2:Hg19::chr11:5248435..5248444,+#_52b620a34b25e84ba426b68b5ad61be6p@chr11:5248435..5248444, +
3.29e-195FFCP PHASE2:Hg19::chr8:101412217..101412218,+#_52b620a34b25e84ba426b68b5ad61be6p@chr8:101412217..101412218, +
3.29e-195FFCP PHASE1:Hg19::chr16:227522..227524,+#_52b620a34b25e84ba426b68b5ad61be6p@chr16:227522..227524, +
3.29e-195FFCP PHASE2:Hg19::chr11:5247730..5247736,-#_52b620a34b25e84ba426b68b5ad61be6p@chr11:5247730..5247736, -
3.29e-195FFCP PHASE1:Hg19::chr19:1207927..1207939,-#_52b620a34b25e84ba426b68b5ad61be6p@chr19:1207927..1207939, -
3.29e-195FFCP PHASE2:Hg19::chr6:50700492..50700495,+#_52b620a34b25e84ba426b68b5ad61be6p@chr6:50700492..50700495, +
3.29e-195FFCP PHASE1:Hg19::chr1:220146675..220146678,-#_52b620a34b25e84ba426b68b5ad61be6p@chr1:220146675..220146678, -
3.29e-195FFCP PHASE2:Hg19::chr9:45465498..45465501,+#_52b620a34b25e84ba426b68b5ad61be6p@chr9:45465498..45465501, +
3.29e-195FFCP PHASE1:Hg19::chr1:5543682..5543685,+#_52b620a34b25e84ba426b68b5ad61be6p@chr1:5543682..5543685, +
3.29e-195FFCP PHASE1:Hg19::chr7:23205190..23205198,+#_52b620a34b25e84ba426b68b5ad61be6p10@KLHL7
3.29e-195FFCP PHASE2:Hg19::chrX:107332036..107332041,+#_52b620a34b25e84ba426b68b5ad61be6p@chrX:107332036..107332041, +
3.29e-195FFCP PHASE1:Hg19::chr4:82805715..82805717,+#_52b620a34b25e84ba426b68b5ad61be6p@chr4:82805715..82805717, +
3.29e-195FFCP PHASE1:Hg19::chr6:155472342..155472346,-#_52b620a34b25e84ba426b68b5ad61be6p@chr6:155472342..155472346, -
3.29e-195FFCP PHASE2:Hg19::chr3:49726593..49726603,+#_52b620a34b25e84ba426b68b5ad61be6p4@RNF123
3.29e-195FFCP PHASE2:Hg19::chr1:207823590..207823599,+#_52b620a34b25e84ba426b68b5ad61be6p@chr1:207823590..207823599, +
3.29e-195FFCP PHASE1:Hg19::chr10:94679592..94679594,-#_52b620a34b25e84ba426b68b5ad61be6p@chr10:94679592..94679594, -
3.29e-195FFCP PHASE1:Hg19::chr4:175593804..175593809,+#_52b620a34b25e84ba426b68b5ad61be6p@chr4:175593804..175593809, +
3.29e-195FFCP PHASE1:Hg19::chr6:10585661..10585670,+#_52b620a34b25e84ba426b68b5ad61be6p26@GCNT2
3.29e-195FFCP PHASE2:Hg19::chr20:24432163..24432165,+#_52b620a34b25e84ba426b68b5ad61be6p@chr20:24432163..24432165, +
3.29e-195FFCP PHASE1:Hg19::chr14:55799575..55799582,+#_52b620a34b25e84ba426b68b5ad61be6p@chr14:55799575..55799582, +
3.29e-195FFCP PHASE2:Hg19::chr1:2250692..2250695,+#_52b620a34b25e84ba426b68b5ad61be6p@chr1:2250692..2250695, +
3.29e-195FFCP PHASE2:Hg19::chr18:11740276..11740278,+#_52b620a34b25e84ba426b68b5ad61be6p@chr18:11740276..11740278, +
3.29e-195FFCP PHASE2:Hg19::chr13:23969126..23969130,+#_52b620a34b25e84ba426b68b5ad61be6p@chr13:23969126..23969130, +
3.29e-195FFCP PHASE2:Hg19::chr1:25598971..25598977,+#_52b620a34b25e84ba426b68b5ad61be6p4@RHD
3.29e-195FFCP PHASE1:Hg19::chr1:25599018..25599028,+#_52b620a34b25e84ba426b68b5ad61be6p3@RHD
3.29e-195FFCP PHASE2:Hg19::chr2:62801311..62801318,+#_52b620a34b25e84ba426b68b5ad61be6p@chr2:62801311..62801318, +
3.29e-195FFCP PHASE1:Hg19::chr4:190941380..190941381,+#_52b620a34b25e84ba426b68b5ad61be6p@chr4:190941380..190941381, +
3.29e-195FFCP PHASE1:Hg19::chr3:49726561..49726577,+#_52b620a34b25e84ba426b68b5ad61be6p3@RNF123
3.29e-195FFCP PHASE1:Hg19::chr19:19535964..19535966,+#_52b620a34b25e84ba426b68b5ad61be6p@chr19:19535964..19535966, +
3.29e-195FFCP PHASE1:Hg19::chr13:23969126..23969130,+#_52b620a34b25e84ba426b68b5ad61be6p@chr13:23969126..23969130, +
3.29e-195FFCP PHASE1:Hg19::chr2:71833597..71833600,+#_52b620a34b25e84ba426b68b5ad61be6p@chr2:71833597..71833600, +
3.29e-195FFCP PHASE2:Hg19::chr8:138915590..138915591,+#_52b620a34b25e84ba426b68b5ad61be6p@chr8:138915590..138915591, +
3.29e-195FFCP PHASE2:Hg19::chr21:27203678..27203684,+#_52b620a34b25e84ba426b68b5ad61be6p@chr21:27203678..27203684, +
3.29e-195FFCP PHASE1:Hg19::chr7:23205201..23205207,+#_52b620a34b25e84ba426b68b5ad61be6p13@KLHL7
3.29e-195FFCP PHASE2:Hg19::chr2:87816262..87816269,+#_52b620a34b25e84ba426b68b5ad61be6p@chr2:87816262..87816269, +
3.29e-195FFCP PHASE2:Hg19::chr22:30680245..30680254,-#_52b620a34b25e84ba426b68b5ad61be6p@chr22:30680245..30680254, -
3.29e-195FFCP PHASE2:Hg19::chr10:94679592..94679594,-#_52b620a34b25e84ba426b68b5ad61be6p@chr10:94679592..94679594, -
3.29e-195FFCP PHASE1:Hg19::chr11:115492263..115492265,+#_52b620a34b25e84ba426b68b5ad61be6p@chr11:115492263..115492265, +
3.29e-195FFCP PHASE1:Hg19::chr1:158580993..158580998,-#_52b620a34b25e84ba426b68b5ad61be6p@chr1:158580993..158580998, -
3.29e-195FFCP PHASE2:Hg19::chr7:23205190..23205198,+#_52b620a34b25e84ba426b68b5ad61be6p10@KLHL7
3.29e-195FFCP PHASE2:Hg19::chr13:106256314..106256318,+#_52b620a34b25e84ba426b68b5ad61be6p@chr13:106256314..106256318, +
3.29e-195FFCP PHASE2:Hg19::chr17:27188395..27188398,-#_52b620a34b25e84ba426b68b5ad61be6p1@MIR451A
3.29e-195FFCP PHASE2:Hg19::chr8:63838198..63838201,+#_52b620a34b25e84ba426b68b5ad61be6p@chr8:63838198..63838201, +
3.29e-195FFCP PHASE1:Hg19::chr18:11740276..11740278,+#_52b620a34b25e84ba426b68b5ad61be6p@chr18:11740276..11740278, +
3.29e-195FFCP PHASE1:Hg19::chr9:138852021..138852030,+#_52b620a34b25e84ba426b68b5ad61be6p@chr9:138852021..138852030, +
3.29e-195FFCP PHASE1:Hg19::chr11:57416011..57416016,+#_52b620a34b25e84ba426b68b5ad61be6p9@CLP1
3.29e-195FFCP PHASE2:Hg19::chr11:57416011..57416016,+#_52b620a34b25e84ba426b68b5ad61be6p9@CLP1
3.29e-195FFCP PHASE1:Hg19::chr13:106256314..106256318,+#_52b620a34b25e84ba426b68b5ad61be6p@chr13:106256314..106256318, +
3.29e-195FFCP PHASE1:Hg19::chr12:131245491..131245492,+#_52b620a34b25e84ba426b68b5ad61be6p@chr12:131245491..131245492, +
3.29e-195FFCP PHASE1:Hg19::chr6:10585672..10585677,+#_52b620a34b25e84ba426b68b5ad61be6p42@GCNT2
3.29e-195FFCP PHASE2:Hg19::chr16:15616042..15616045,+#_52b620a34b25e84ba426b68b5ad61be6p@chr16:15616042..15616045, +
3.29e-195FFCP PHASE2:Hg19::chr1:95582484..95582492,+#_52b620a34b25e84ba426b68b5ad61be6p10@TMEM56
3.29e-195FFCP PHASE2:Hg19::chr6:10585661..10585670,+#_52b620a34b25e84ba426b68b5ad61be6p26@GCNT2
3.29e-195FFCP PHASE2:Hg19::chr1:25598993..25599007,+#_52b620a34b25e84ba426b68b5ad61be6p1@RHD
3.29e-195FFCP PHASE2:Hg19::chr1:220146675..220146678,-#_52b620a34b25e84ba426b68b5ad61be6p@chr1:220146675..220146678, -
3.29e-195FFCP PHASE1:Hg19::chr9:123853258..123853276,-#_52b620a34b25e84ba426b68b5ad61be6p@chr9:123853258..123853276, -
3.29e-195FFCP PHASE2:Hg19::chr19:1207927..1207939,-#_52b620a34b25e84ba426b68b5ad61be6p@chr19:1207927..1207939, -
3.29e-195FFCP PHASE2:Hg19::chr17:42366115..42366125,+#_52b620a34b25e84ba426b68b5ad61be6p@chr17:42366115..42366125, +
3.29e-195FFCP PHASE1:Hg19::chr4:26378984..26378987,+#_52b620a34b25e84ba426b68b5ad61be6p@chr4:26378984..26378987, +
3.29e-195FFCP PHASE1:Hg19::chr3:49726589..49726592,+#_52b620a34b25e84ba426b68b5ad61be6p7@RNF123
3.29e-195FFCP PHASE2:Hg19::chr1:5543682..5543685,+#_52b620a34b25e84ba426b68b5ad61be6p@chr1:5543682..5543685, +
3.29e-195FFCP PHASE2:Hg19::chr12:75560876..75560881,+#_52b620a34b25e84ba426b68b5ad61be6p@chr12:75560876..75560881, +
3.29e-195FFCP PHASE1:Hg19::chr17:27188395..27188398,-#_52b620a34b25e84ba426b68b5ad61be6p1@MIR451A
3.29e-195FFCP PHASE2:Hg19::chr4:82805715..82805717,+#_52b620a34b25e84ba426b68b5ad61be6p@chr4:82805715..82805717, +
3.29e-195FFCP PHASE2:Hg19::chr11:115492263..115492265,+#_52b620a34b25e84ba426b68b5ad61be6p@chr11:115492263..115492265, +
3.29e-195FFCP PHASE1:Hg19::chr16:15616042..15616045,+#_52b620a34b25e84ba426b68b5ad61be6p@chr16:15616042..15616045, +
3.29e-195FFCP PHASE2:Hg19::chr6:155472342..155472346,-#_52b620a34b25e84ba426b68b5ad61be6p@chr6:155472342..155472346, -
3.29e-195FFCP PHASE2:Hg19::chr16:67228546..67228549,+#_52b620a34b25e84ba426b68b5ad61be6p@chr16:67228546..67228549, +
3.29e-195FFCP PHASE1:Hg19::chr2:112191654..112191660,-#_52b620a34b25e84ba426b68b5ad61be6p@chr2:112191654..112191660, -
3.29e-195FFCP PHASE2:Hg19::chr7:23205201..23205207,+#_52b620a34b25e84ba426b68b5ad61be6p13@KLHL7
3.29e-195FFCP PHASE2:Hg19::chr14:96742091..96742094,-#_52b620a34b25e84ba426b68b5ad61be6p@chr14:96742091..96742094, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0000558&oldid=3275304"