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{{UBERON
{{UBERON
|id=UBERON:0004119
|alt_id=
|name=endoderm-derived structure
|namespace=
|def="An anatomical structure that develops (entirely or partially) from the endoderm." [UBERON:cjm]
|xref=
|is_a=UBERON:0010317
|synonym=
|comment=Grouping term for query purposes
|comment=Grouping term for query purposes
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An anatomical structure that develops (entirely or partially) from the endoderm." [UBERON:cjm]
|subset=grouping_class
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0000925
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004119
|is_a=UBERON:0000061
|is_obsolete=
|located_in=
|located_in=
|name=endoderm-derived structure
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=grouping_class
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 17:43, 12 September 2014

Name:endoderm-derived structure
Namespace:FANTOM
Definition:"An anatomical structure that develops (entirely or partially) from the endoderm." [UBERON:cjm]
Comments:Grouping term for query purposes
Subset: grouping_class

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000061(anatomical structure)
develops_from:UBERON:0000925(endoderm)



Children

is a:UBERON:0000006 (islet of Langerhans),UBERON:0000016 (endocrine pancreas),UBERON:0000065 (respiratory tract),UBERON:0000072 (segment of respiratory tract),UBERON:0000077 (mixed endoderm/mesoderm-derived structure),UBERON:0000101 (lobe of lung),UBERON:0000117 (respiratory tube),UBERON:0000170 (pair of lungs),UBERON:0000931 (proctodeum),UBERON:0001171 (portal lobule),UBERON:0001172 (hepatic acinus),UBERON:0001173 (biliary tree),UBERON:0001280 (liver parenchyma),UBERON:0001723 (tongue),UBERON:0001726 (papilla of tongue),UBERON:0001735 (tonsillar ring),UBERON:0001736 (submandibular gland),UBERON:0001737 (larynx),UBERON:0001826 (nasal cavity mucosa),UBERON:0001831 (parotid gland),UBERON:0002046 (thyroid gland),UBERON:0002048 (lung),UBERON:0002107 (liver),UBERON:0002110 (gallbladder),UBERON:0002173 (alveolar duct),UBERON:0002299 (alveolus of lung),UBERON:0002372 (tonsil),UBERON:0002394 (bile duct),UBERON:0002397 (maxilla),UBERON:0002539 (pharyngeal arch),UBERON:0003091 (thyroid primordium),UBERON:0003295 (pharyngeal gland),UBERON:0003323 (mesenchyme of upper jaw),UBERON:0004185 (endodermal part of digestive tract),UBERON:0004647 (liver lobule),UBERON:0004894 (alveolar wall),UBERON:0004913 (hepatopancreatic ampulla),UBERON:0005020 (mucosa of tongue),UBERON:0005911 (endo-epithelium),UBERON:0006524 (alveolar system),UBERON:0006877 (vasculature of liver),UBERON:0007196 (tracheobronchial tree),UBERON:0007303 (pharyngeal vasculature),UBERON:0007329 (pancreatic duct),UBERON:0008814 (pharyngeal arch system),UBERON:0009471 (dorsum of tongue),UBERON:0009494 (pharyngeal arch mesenchymal region),UBERON:0009526 (maxillary process mesenchyme),UBERON:0010046 (entire pharyngeal arch associated mesenchyme),UBERON:0010359 (pharyngeal arch mesenchyme from neural crest)... further results

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004119 (endoderm-derived structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.25e-39FFCP PHASE1:Hg19::chr14:38064429..38064486,-#_0b2c523b9b46cba36157638cff5013d7p1@FOXA1
5.25e-39FFCP PHASE2:Hg19::chr14:38064429..38064486,-#_0b2c523b9b46cba36157638cff5013d7p1@FOXA1
5.41e-39FFCP PHASE1:Hg19::chr16:68269971..68270059,-#_7b334b9795a4e9e86761f07939e121ebp1@ESRP2
5.41e-39FFCP PHASE2:Hg19::chr16:68269971..68270059,-#_7b334b9795a4e9e86761f07939e121ebp1@ESRP2
4.26e-36FFCP PHASE1:Hg19::chr5:134369879..134369898,-#_132df564e20196548c6ce462737490aep2@PITX1
4.26e-36FFCP PHASE2:Hg19::chr5:134369879..134369898,-#_132df564e20196548c6ce462737490aep2@PITX1
7.78e-36FFCP PHASE1:Hg19::chr20:62168672..62168713,-#_fc081973c800e30702f3a7fc84df1e51p1@PTK6
7.78e-36FFCP PHASE2:Hg19::chr20:62168672..62168713,-#_fc081973c800e30702f3a7fc84df1e51p1@PTK6
8.3e-36FFCP PHASE2:Hg19::chr1:209825762..209825779,-#_6ad0c58815c7685106ad88a53b5160b6p1@LAMB3
8.3e-36FFCP PHASE1:Hg19::chr1:209825762..209825779,-#_6ad0c58815c7685106ad88a53b5160b6p1@LAMB3
1.75e-35FFCP PHASE1:Hg19::chr11:394196..394258,+#_c2dddfdaf3ee8998fe39acb06d6d6130p1@PKP3
1.75e-35FFCP PHASE2:Hg19::chr11:394196..394258,+#_c2dddfdaf3ee8998fe39acb06d6d6130p1@PKP3
2.07e-35FFCP PHASE2:Hg19::chr19:42212526..42212575,+#_6398bfde377ca88199870395d51b6012p1@CEACAM5
2.07e-35FFCP PHASE1:Hg19::chr19:42212526..42212575,+#_6398bfde377ca88199870395d51b6012p1@CEACAM5
3.2e-35FFCP PHASE2:Hg19::chr14:65409452..65409479,-#_c6afe7b2b1b55a2949a016684b1b4501p1@GPX2
3.2e-35FFCP PHASE1:Hg19::chr14:65409452..65409479,-#_c6afe7b2b1b55a2949a016684b1b4501p1@GPX2
3.67e-35FFCP PHASE1:Hg19::chr1:26503974..26504025,+#_7b039e6117ceaf6d07451610b6db7952p1@CNKSR1
3.67e-35FFCP PHASE2:Hg19::chr1:26503974..26504025,+#_7b039e6117ceaf6d07451610b6db7952p1@CNKSR1
2.73e-34FFCP PHASE1:Hg19::chr16:68260798..68260800,-#_903eb7f8567c5e222e30a672744d9b5bp@chr16:68260798..68260800, -
2.73e-34FFCP PHASE2:Hg19::chr16:68260798..68260800,-#_903eb7f8567c5e222e30a672744d9b5bp@chr16:68260798..68260800, -
3.29e-34FFCP PHASE2:Hg19::chr18:47721315..47721430,-#_a10bd637bf7e80559038b4af7f513dfdp1@MYO5B
3.29e-34FFCP PHASE1:Hg19::chr18:47721315..47721430,-#_a10bd637bf7e80559038b4af7f513dfdp1@MYO5B
3.5e-34FFCP PHASE2:Hg19::chr17:7164410..7164457,-#_d3873029c6b6c13dbd3d5eb54090a2fdp3@CLDN7
3.5e-34FFCP PHASE1:Hg19::chr17:7164410..7164457,-#_d3873029c6b6c13dbd3d5eb54090a2fdp3@CLDN7
1.73e-33FFCP PHASE2:Hg19::chr11:32851450..32851485,+#_183102819db7e29ba9aec56ba69fa018p1@PRRG4
1.73e-33FFCP PHASE1:Hg19::chr11:32851450..32851485,+#_183102819db7e29ba9aec56ba69fa018p1@PRRG4
3.14e-33FFCP PHASE2:Hg19::chr18:61144160..61144214,+#_f5552a5c0bfe9f02fed9b369bbf50e33p1@SERPINB5
3.14e-33FFCP PHASE1:Hg19::chr18:61144160..61144214,+#_f5552a5c0bfe9f02fed9b369bbf50e33p1@SERPINB5
3.49e-33FFCP PHASE1:Hg19::chr14:65409484..65409495,-#_6492e0c3e40979aa3ff4e773b37f54ffp2@GPX2
3.49e-33FFCP PHASE2:Hg19::chr14:65409484..65409495,-#_6492e0c3e40979aa3ff4e773b37f54ffp2@GPX2
4.5e-33FFCP PHASE2:Hg19::chr8:82644741..82644791,+#_384f5201bb78c8c222d8fc4fbf838f1bp2@CHMP4C
4.5e-33FFCP PHASE1:Hg19::chr8:82644741..82644791,+#_384f5201bb78c8c222d8fc4fbf838f1bp2@CHMP4C
1.62e-32FFCP PHASE2:Hg19::chr17:39942220..39942242,-#_fb6394f7f9207d74ad99676664cfa761p2@JUP
1.62e-32FFCP PHASE1:Hg19::chr17:39942220..39942242,-#_fb6394f7f9207d74ad99676664cfa761p2@JUP
5.24e-32FFCP PHASE2:Hg19::chr1:201979743..201979762,+#_a1092910678549eb2c2cb3d0168b5080p1@ELF3
5.24e-32FFCP PHASE1:Hg19::chr1:201979743..201979762,+#_a1092910678549eb2c2cb3d0168b5080p1@ELF3
1.23e-31FFCP PHASE2:Hg19::chr1:207206020..207206050,-#_fc56184444be029be34ee5a45f39242ep1@C1orf116
1.23e-31FFCP PHASE1:Hg19::chr1:207206020..207206050,-#_fc56184444be029be34ee5a45f39242ep1@C1orf116
1.54e-31FFCP PHASE1:Hg19::chr7:16844611..16844628,-#_5facf988050fef984e8a5cd4e07b14c4p1@AGR2
1.54e-31FFCP PHASE2:Hg19::chr7:16844611..16844628,-#_5facf988050fef984e8a5cd4e07b14c4p1@AGR2
1.75e-31FFCP PHASE1:Hg19::chr1:201368430..201368460,-#_b3bdfc26bdf193eb2b15bf172df62244p1@LAD1
1.75e-31FFCP PHASE2:Hg19::chr1:201368430..201368460,-#_b3bdfc26bdf193eb2b15bf172df62244p1@LAD1
1.77e-31FFCP PHASE2:Hg19::chr19:751122..751139,+#_d4f6eb7085e1695c1177f13f4e54f4abp1@C19orf21
1.77e-31FFCP PHASE1:Hg19::chr19:751122..751139,+#_d4f6eb7085e1695c1177f13f4e54f4abp1@C19orf21
1.83e-31FFCP PHASE1:Hg19::chrX:48916506..48916557,+#_35de7a2ffd6c30fcb552e92dbb981e13p1@CCDC120
1.83e-31FFCP PHASE2:Hg19::chrX:48916506..48916557,+#_35de7a2ffd6c30fcb552e92dbb981e13p1@CCDC120
2.28e-31FFCP PHASE2:Hg19::chr17:38657867..38657882,-#_ca518defe70d3886fb7d3f633ee199cdp1@TNS4
2.28e-31FFCP PHASE1:Hg19::chr17:38657867..38657882,-#_ca518defe70d3886fb7d3f633ee199cdp1@TNS4
2.84e-31FFCP PHASE2:Hg19::chr19:17905938..17905980,+#_b1a2f5fcf3a1197141476e27b23e1386p1@B3GNT3
2.84e-31FFCP PHASE1:Hg19::chr19:17905938..17905980,+#_b1a2f5fcf3a1197141476e27b23e1386p1@B3GNT3
3.29e-31FFCP PHASE1:Hg19::chr11:706219..706260,+#_fb578b59013b0898eedd6e945a0126f6p1@EPS8L2
3.29e-31FFCP PHASE2:Hg19::chr11:706219..706260,+#_fb578b59013b0898eedd6e945a0126f6p1@EPS8L2
4.16e-31FFCP PHASE1:Hg19::chr3:111451321..111451372,+#_8570b2a8ca91947110c2fc485d668675p3@PHLDB2
4.16e-31FFCP PHASE2:Hg19::chr3:111451321..111451372,+#_8570b2a8ca91947110c2fc485d668675p3@PHLDB2
5.94e-31FFCP PHASE2:Hg19::chr16:57653946..57653968,+#_04f3e16dbab0d47a92e7cdf57dbe75d2p4@GPR56
5.94e-31FFCP PHASE1:Hg19::chr16:57653946..57653968,+#_04f3e16dbab0d47a92e7cdf57dbe75d2p4@GPR56
1.21e-30FFCP PHASE2:Hg19::chr5:68711023..68711075,+#_38d748e2d57e20443c545d0d96a4b3e0p2@MARVELD2
1.21e-30FFCP PHASE1:Hg19::chr5:68711023..68711075,+#_38d748e2d57e20443c545d0d96a4b3e0p2@MARVELD2
1.74e-30FFCP PHASE2:Hg19::chr19:751104..751121,+#_bb77e9244c638cf6b32b3c57924e3436p2@C19orf21
1.74e-30FFCP PHASE1:Hg19::chr19:751104..751121,+#_bb77e9244c638cf6b32b3c57924e3436p2@C19orf21
2.5e-30FFCP PHASE2:Hg19::chr8:144815914..144815961,-#_dca14fe092e596ae942a85bd9bcafe11p1@FAM83H
2.5e-30FFCP PHASE1:Hg19::chr8:144815914..144815961,-#_dca14fe092e596ae942a85bd9bcafe11p1@FAM83H
2.54e-30FFCP PHASE2:Hg19::chr19:50084561..50084603,+#_2e7a38ca650ed383c1eaa8e9dad1d8c3p1@PRRG2
2.54e-30FFCP PHASE1:Hg19::chr19:50084561..50084603,+#_2e7a38ca650ed383c1eaa8e9dad1d8c3p1@PRRG2
4.0e-30FFCP PHASE1:Hg19::chr1:27189631..27189648,+#_91be2de124a57c55524267cda2fe898bp1@SFN
4.0e-30FFCP PHASE2:Hg19::chr1:27189631..27189648,+#_91be2de124a57c55524267cda2fe898bp1@SFN
4.35e-30FFCP PHASE1:Hg19::chrX:115567767..115567784,+#_b56bf649069ad5efeb782b373ee03254p1@SLC6A14
4.35e-30FFCP PHASE2:Hg19::chrX:115567767..115567784,+#_b56bf649069ad5efeb782b373ee03254p1@SLC6A14
4.53e-30FFCP PHASE2:Hg19::chr16:31147020..31147058,-#_8a90028110bde8142eb322589dcc958ep1@PRSS8
4.53e-30FFCP PHASE1:Hg19::chr16:31147020..31147058,-#_8a90028110bde8142eb322589dcc958ep1@PRSS8
5.44e-30FFCP PHASE1:Hg19::chr4:15939963..15939978,-#_2c18bf064abce9051fdb530ce6bf9876p1@FGFBP1
5.44e-30FFCP PHASE2:Hg19::chr4:15939963..15939978,-#_2c18bf064abce9051fdb530ce6bf9876p1@FGFBP1
5.82e-30FFCP PHASE1:Hg19::chr1:200864020..200864063,+#_03c2d882da02f5fdb76c31be91d08a86p1@C1orf106
5.82e-30FFCP PHASE2:Hg19::chr1:200864020..200864063,+#_03c2d882da02f5fdb76c31be91d08a86p1@C1orf106
9.01e-30FFCP PHASE1:Hg19::chr9:139379069..139379135,-#_a1c7f7969bbbdc989d5d2d76bd99c9dep@chr9:139379069..139379135, -
9.01e-30FFCP PHASE2:Hg19::chr9:139379069..139379135,-#_a1c7f7969bbbdc989d5d2d76bd99c9dep@chr9:139379069..139379135, -
1.06e-29FFCP PHASE2:Hg19::chr11:72492256..72492358,-#_0b013e229c4fa3bfdddee7f8188867a1p3@STARD10
1.06e-29FFCP PHASE2:Hg19::chr14:65409502..65409511,-#_0b013e229c4fa3bfdddee7f8188867a1p3@GPX2
1.06e-29FFCP PHASE1:Hg19::chr11:72492256..72492358,-#_0b013e229c4fa3bfdddee7f8188867a1p3@STARD10
1.06e-29FFCP PHASE1:Hg19::chr14:65409502..65409511,-#_0b013e229c4fa3bfdddee7f8188867a1p3@GPX2
1.32e-29FFCP PHASE1:Hg19::chr1:201368476..201368498,-#_c873a096687b27d81fa5c679e6adb1e3p4@LAD1
1.32e-29FFCP PHASE2:Hg19::chr1:201368476..201368498,-#_c873a096687b27d81fa5c679e6adb1e3p4@LAD1
2.3e-29FFCP PHASE1:Hg19::chr5:134369905..134369972,-#_f3829b5e103553487197cc78455b1a87p1@PITX1
2.3e-29FFCP PHASE2:Hg19::chr5:134369905..134369972,-#_f3829b5e103553487197cc78455b1a87p1@PITX1
2.62e-29FFCP PHASE2:Hg19::chr1:153588789..153588808,-#_ce3c10fffb3067e4e9178905b91dccfap1@S100A14
2.62e-29FFCP PHASE1:Hg19::chr1:153588789..153588808,-#_ce3c10fffb3067e4e9178905b91dccfap1@S100A14
3.05e-29FFCP PHASE2:Hg19::chr1:207206095..207206121,-#_0a404fabc5769a685ec5c90121f672ddp2@C1orf116
3.05e-29FFCP PHASE1:Hg19::chr1:207206095..207206121,-#_0a404fabc5769a685ec5c90121f672ddp2@C1orf116
3.1e-29FFCP PHASE2:Hg19::chr1:201979703..201979721,+#_f0d9ad1d8defb1669c8c6deeba8f5c14p2@ELF3
3.1e-29FFCP PHASE1:Hg19::chr1:201979703..201979721,+#_f0d9ad1d8defb1669c8c6deeba8f5c14p2@ELF3
3.71e-29FFCP PHASE1:Hg19::chr19:50084621..50084673,+#_5badbb2c064d098eb01a16d3db43c314p2@PRRG2
3.71e-29FFCP PHASE2:Hg19::chr19:50084621..50084673,+#_5badbb2c064d098eb01a16d3db43c314p2@PRRG2
4.26e-29FFCP PHASE1:Mm9::chr13:4190454..4190472,+#_33286bfdca9dbc8145589bf893fe4361p2@Akr1c13
4.26e-29FFCP PHASE2:Mm9::chr13:4190454..4190472,+#_33286bfdca9dbc8145589bf893fe4361p2@Akr1c13
5.11e-29FFCP PHASE2:Hg19::chr11:706174..706213,+#_5c7aecaeb005ff2988fa70bd740ce08ap2@EPS8L2
5.11e-29FFCP PHASE1:Hg19::chr11:706174..706213,+#_5c7aecaeb005ff2988fa70bd740ce08ap2@EPS8L2
5.22e-29FFCP PHASE2:Hg19::chr17:75277512..75277592,+#_64cfe3216d76ea7977148f9bfc6fbc3bp2@SEPT9
5.22e-29FFCP PHASE1:Hg19::chr17:75277512..75277592,+#_64cfe3216d76ea7977148f9bfc6fbc3bp2@SEPT9
5.95e-29FFCP PHASE1:Hg19::chr5:125706998..125707018,+#_602166196f8d8930dbfd5d3a8c6639b2p4@GRAMD3
5.95e-29FFCP PHASE2:Hg19::chr5:125706998..125707018,+#_602166196f8d8930dbfd5d3a8c6639b2p4@GRAMD3

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