FFCP PHASE1:Hg19::chr19:5261030..5261048,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:5261030..5261048,-
|short_description=p@chr19:5261030..5261048,-
|description=CAGE_peak_at_chr19:5261030..5261048,-
|association_with_transcript=NA
|Entr...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:5261030..5261048,- | |||
|description=CAGE_peak_at_chr19:5261030..5261048,- | |||
|id=chr19:5261030..5261048,- | |||
|ontology_enrichment_celltype=CL:0000244!8.29e-09!4;CL:0000731!8.29e-09!4 | |||
|ontology_enrichment_celltype_v019=CL:0002251;2.38e-10;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002251,2.18e-10,20;CL:0000223,1.80e-07,58;CL:0002076,2.10e-07,42;CL:0000076,7.34e-07,63 | |||
|ontology_enrichment_development_v019=UBERON:0008814;1.93e-07;2!UBERON:0010056;1.93e-07;2 | |||
|ontology_enrichment_disease=DOID:1749!2.32e-16!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;7.51e-32;14!DOID:3151;4.83e-14;1!DOID:3149;4.83e-14;1!DOID:1325;6.08e-08;7!DOID:3904;6.08e-08;7!DOID:4074;9.86e-08;2!DOID:4905;9.86e-08;2!DOID:3498;9.86e-08;2!DOID:3451;1.16e-07;2!DOID:4159;1.16e-07;2!DOID:0060122;1.16e-07;2!DOID:3910;1.93e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,5.60e-32,14;DOID:3151,4.53e-14,1;DOID:3149,4.53e-14,1;DOID:305,1.34e-10,106;DOID:1325,7.24e-08,7;DOID:3904,7.24e-08,7;DOID:4074,9.87e-08,2;DOID:4905,9.87e-08,2;DOID:3498,9.87e-08,2;DOID:3451,1.12e-07,2;DOID:4159,1.12e-07,2;DOID:0060122,1.12e-07,2;DOID:0050687,1.58e-07,143;DOID:3910,2.40e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0000974!6.58e-22!10;UBERON:0003729!6.79e-19!5;UBERON:0003343!1.01e-15!4;UBERON:0004785!1.01e-15!4;UBERON:0006562!2.47e-11!11;UBERON:0000344!8.67e-11!12;UBERON:0001004!5.41e-09!72;UBERON:0004119!9.93e-09!169;UBERON:0000925!9.93e-09!169;UBERON:0006595!9.93e-09!169;UBERON:0001042!1.02e-08!10;UBERON:0009145!1.02e-08!10;UBERON:0000065!1.90e-08!53;UBERON:0000341!6.62e-08!2;UBERON:0007023!3.00e-07!115;UBERON:0000365!4.03e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0003343;6.10e-29;4!UBERON:0004785;6.10e-29;4!UBERON:0000974;1.56e-19;6!UBERON:0000997;4.83e-14;1!UBERON:0005056;4.83e-14;1!UBERON:0004176;4.83e-14;1!UBERON:0003729;2.46e-09;13!UBERON:0000178;6.14e-08;15!UBERON:0000179;6.14e-08;15!UBERON:0000463;6.14e-08;15!UBERON:0006562;1.36e-07;2!UBERON:0004903;1.93e-07;2!UBERON:0002173;1.93e-07;2!UBERON:0002186;1.93e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,4.82e-29,4;UBERON:0004785,4.82e-29,4;UBERON:0000997,5.15e-14,1;UBERON:0005056,5.15e-14,1;UBERON:0000974,5.20e-12,10;UBERON:0003729,2.29e-09,13;UBERON:0000178,6.37e-08,15;UBERON:0000179,6.37e-08,15;UBERON:0000463,6.37e-08,15;UBERON:0004903,2.40e-07,2;UBERON:0002173,2.40e-07,2;UBERON:0002186,2.40e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0.510450849978337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0,0.43050537267123,0,1.33029046061003,0.229723400206959,0,1.52927441428475,0,0.476463550915578,0,1.29694662238543,1.08006287447623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82069517256799,1.01701460117107,1.18193840883968,0,0,0,0,0,0,0,0,0,0,2.37020365273626,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.6742739490306,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.13575671726008,0,0.17472666824203,0,0,0,0,0.581934098930517,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0.942776138467182,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.35434687599266,0,0,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.106787412567695,0.471612915298998,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.06663573207384,0.235939446695481,4.4022863645203,1.61735932610474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,2.6830109804315,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128915775947154,0,0.357107877211315,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0.213233981900981,0.23806443146374,0.129177819672012,0.124149428591716,0,0,0,0,0.342233301085281,0.740872583160463,0.286888821570705,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277765335475589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0.510450849978337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0,0.43050537267123,0,1.33029046061003,0.229723400206959,0,1.52927441428475,0,0.476463550915578,0,1.29694662238543,1.08006287447623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82069517256799,1.01701460117107,1.18193840883968,0,0,0,0,0,0,0,0,0,0,2.37020365273626,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.6742739490306,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.13575671726008,0,0.17472666824203,0,0,0,0,0.581934098930517,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0.942776138467182,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.35434687599266,0,0,0,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.106787412567695,0.471612915298998,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.06663573207384,0.235939446695481,4.4022863645203,1.61735932610474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,2.6830109804315,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128915775947154,0,0.357107877211315,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0.213233981900981,0.23806443146374,0.129177819672012,0.124149428591716,0,0,0,0,0.342233301085281,0.740872583160463,0.286888821570705,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p@chr19:5261030..5261048,- | |||
}} | }} |
Latest revision as of 16:51, 27 July 2015
Short description: | p@chr19:5261030..5261048, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:5261030..5261048, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of alimentary canal | 2.18e-10 | 20 |
endodermal cell | 1.80e-07 | 58 |
endo-epithelial cell | 2.10e-07 | 42 |
squamous epithelial cell | 7.34e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 4.82e-29 | 4 |
respiratory system mucosa | 4.82e-29 | 4 |
mammalian vulva | 5.15e-14 | 1 |
external female genitalia | 5.15e-14 | 1 |
neck | 5.20e-12 | 10 |
mouth mucosa | 2.29e-09 | 13 |
blood | 6.37e-08 | 15 |
haemolymphatic fluid | 6.37e-08 | 15 |
organism substance | 6.37e-08 | 15 |
bronchoalveolar duct junction | 2.40e-07 | 2 |
alveolar duct | 2.40e-07 | 2 |
bronchiole | 2.40e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 5.60e-32 | 14 |
skin squamous cell carcinoma | 4.53e-14 | 1 |
keratoacanthoma | 4.53e-14 | 1 |
carcinoma | 1.34e-10 | 106 |
bronchus cancer | 7.24e-08 | 7 |
bronchogenic carcinoma | 7.24e-08 | 7 |
pancreas adenocarcinoma | 9.87e-08 | 2 |
pancreatic carcinoma | 9.87e-08 | 2 |
pancreatic ductal adenocarcinoma | 9.87e-08 | 2 |
skin carcinoma | 1.12e-07 | 2 |
skin cancer | 1.12e-07 | 2 |
integumentary system cancer | 1.12e-07 | 2 |
cell type cancer | 1.58e-07 | 143 |
lung adenocarcinoma | 2.40e-07 | 2 |