UBERON:0006331: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0006331 | |||
|is_a=UBERON:0002308 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=brainstem nucleus | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0002298 | |part_of=UBERON:0002298 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref=MA:0000821 | |||
}} | }} | ||
Latest revision as of 17:57, 12 September 2014
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002308(nucleus of brain) |
|---|---|
| part_of: | UBERON:0002298(brainstem) |
Children
| is a: | UBERON:0002148 (locus ceruleus) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10165-103B3 (locus coeruleus, adult, donor10252)
- 10182-103D2 (locus coeruleus - adult, donor10196)
- 10362-105F2 (locus coeruleus, newborn, donor10223)
- 10375-105G6 (locus coeruleus, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006331 (brainstem nucleus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.29e-195 | FFCP PHASE1:Hg19::chr2:237146889..237146895,-#_b0cf0e34aaac375f65f76ab8a3bab514 | p@chr2:237146889..237146895, - |
| 3.29e-195 | FFCP PHASE2:Hg19::chr2:237146889..237146895,-#_b0cf0e34aaac375f65f76ab8a3bab514 | p@chr2:237146889..237146895, - |
| 4.22e-98 | FFCP PHASE1:Hg19::chr16:49601912..49601949,-#_27aac67bfad99527244ce5d33900ea9d | p@chr16:49601912..49601949, - |
| 4.22e-98 | FFCP PHASE2:Hg19::chr16:49601912..49601949,-#_27aac67bfad99527244ce5d33900ea9d | p@chr16:49601912..49601949, - |
| 1.16e-78 | FFCP PHASE2:Hg19::chr2:108602711..108602722,+#_250fdf588da96d6895bff89124f861d0 | p3@SLC5A7 |
| 1.16e-78 | FFCP PHASE1:Hg19::chr2:108602711..108602722,+#_250fdf588da96d6895bff89124f861d0 | p3@SLC5A7 |
| 2.84e-66 | FFCP PHASE2:Hg19::chr17:7559346..7559354,+#_d1cab972af0070d1b112b00c32cf9f80 | p@chr17:7559346..7559354, + |
| 2.84e-66 | FFCP PHASE1:Hg19::chr17:7559346..7559354,+#_d1cab972af0070d1b112b00c32cf9f80 | p@chr17:7559346..7559354, + |
| 3.58e-57 | FFCP PHASE2:Hg19::chr2:234077664..234077672,+#_fc70287398441082404a5a90848b1812 | p@chr2:234077664..234077672, + |
| 3.58e-57 | FFCP PHASE1:Hg19::chr2:234077664..234077672,+#_fc70287398441082404a5a90848b1812 | p@chr2:234077664..234077672, + |
| 6.36e-57 | FFCP PHASE1:Hg19::chr9:87427873..87427884,+#_6687618de7884475f215138992617ad7 | p67@NTRK2 |
| 6.36e-57 | FFCP PHASE2:Hg19::chr9:87427873..87427884,+#_6687618de7884475f215138992617ad7 | p67@NTRK2 |
| 8.47e-57 | FFCP PHASE1:Hg19::chr5:75379091..75379100,+#_05e9a4c01e3d53996064aa0836bf642d | p6@SV2C |
| 8.47e-57 | FFCP PHASE1:Hg19::chr11:30751827..30751838,+#_05e9a4c01e3d53996064aa0836bf642d | p@chr11:30751827..30751838, + |
| 8.47e-57 | FFCP PHASE2:Hg19::chr11:30751827..30751838,+#_05e9a4c01e3d53996064aa0836bf642d | p@chr11:30751827..30751838, + |
| 8.47e-57 | FFCP PHASE2:Hg19::chr5:75379091..75379100,+#_05e9a4c01e3d53996064aa0836bf642d | p6@SV2C |
| 1.13e-56 | FFCP PHASE2:Hg19::chr4:117675601..117675614,+#_ade46c05811268d5a8ef6dc2dea759ab | p@chr4:117675601..117675614, + |
| 1.13e-56 | FFCP PHASE1:Hg19::chr4:117675601..117675614,+#_ade46c05811268d5a8ef6dc2dea759ab | p@chr4:117675601..117675614, + |
| 1.5e-56 | FFCP PHASE2:Hg19::chr9:135089670..135089681,-#_ecbceae7e40688f72c0e219b498f3e33 | p@chr9:135089670..135089681, - |
| 1.5e-56 | FFCP PHASE1:Hg19::chr9:135089670..135089681,-#_ecbceae7e40688f72c0e219b498f3e33 | p@chr9:135089670..135089681, - |
| 1.5e-56 | FFCP PHASE2:Hg19::chr10:133878269..133878278,+#_ecbceae7e40688f72c0e219b498f3e33 | p@chr10:133878269..133878278, + |
| 1.5e-56 | FFCP PHASE1:Hg19::chr10:133878269..133878278,+#_ecbceae7e40688f72c0e219b498f3e33 | p@chr10:133878269..133878278, + |
| 2.0e-56 | FFCP PHASE2:Hg19::chr7:94297970..94297982,+#_35b291ff1644a7313dee35927e8c4e15 | p@chr7:94297970..94297982, + |
| 2.0e-56 | FFCP PHASE1:Hg19::chr7:94297970..94297982,+#_35b291ff1644a7313dee35927e8c4e15 | p@chr7:94297970..94297982, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr5:71505323..71505333,+#_3180350968547767fd190ab333c395c2 | p@chr5:71505323..71505333, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr5:71505323..71505333,+#_3180350968547767fd190ab333c395c2 | p@chr5:71505323..71505333, + |
| 1.88e-50 | FFCP PHASE1:Hg19::chr18:5577640..5577652,-#_846d973f0c234a2f16e5d46b686e96eb | p14@EPB41L3 |
| 1.88e-50 | FFCP PHASE2:Hg19::chr18:5577640..5577652,-#_846d973f0c234a2f16e5d46b686e96eb | p14@EPB41L3 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr4:114303795..114303800,+#_51f603973e0f3ea921e8de9abaabfa89 | p51@ANK2 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr11:20621167..20621170,+#_51f603973e0f3ea921e8de9abaabfa89 | p6@SLC6A5 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr4:114303795..114303800,+#_51f603973e0f3ea921e8de9abaabfa89 | p51@ANK2 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr11:20621167..20621170,+#_51f603973e0f3ea921e8de9abaabfa89 | p6@SLC6A5 |
| 4.0e-50 | FFCP PHASE2:Hg19::chr22:37213554..37213565,-#_cf72d6fe41befef364cb189de43814ea | p4@PVALB |
| 4.0e-50 | FFCP PHASE1:Hg19::chr22:37213554..37213565,-#_cf72d6fe41befef364cb189de43814ea | p4@PVALB |
| 4.52e-50 | FFCP PHASE1:Hg19::chr2:218873244..218873256,-#_32c027abec1236e4212f91241334dbd4 | p@chr2:218873244..218873256, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr6:56820018..56820029,+#_32c027abec1236e4212f91241334dbd4 | p16@BEND6 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr2:218873244..218873256,-#_32c027abec1236e4212f91241334dbd4 | p@chr2:218873244..218873256, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr6:56820018..56820029,+#_32c027abec1236e4212f91241334dbd4 | p16@BEND6 |
| 5.15e-50 | FFCP PHASE2:Hg19::chr3:183979132..183979143,-#_c7bbb93d7dff359e59b0e0cd2a630039 | p8@CAMK2N2 |
| 5.15e-50 | FFCP PHASE1:Hg19::chr3:183979132..183979143,-#_c7bbb93d7dff359e59b0e0cd2a630039 | p8@CAMK2N2 |
| 6.61e-50 | FFCP PHASE2:Hg19::chr22:26565113..26565124,+#_196a1e80695e430036fd6c2a7aba20f0 | p7@SEZ6L |
| 6.61e-50 | FFCP PHASE1:Hg19::chr11:81982984..81982991,+#_196a1e80695e430036fd6c2a7aba20f0 | p@chr11:81982984..81982991, + |
| 6.61e-50 | FFCP PHASE1:Hg19::chr22:26565113..26565124,+#_196a1e80695e430036fd6c2a7aba20f0 | p7@SEZ6L |
| 6.61e-50 | FFCP PHASE2:Hg19::chr11:81982984..81982991,+#_196a1e80695e430036fd6c2a7aba20f0 | p@chr11:81982984..81982991, + |
| 6.61e-50 | FFCP PHASE2:Hg19::chr8:82354790..82354800,-#_196a1e80695e430036fd6c2a7aba20f0 | p@chr8:82354790..82354800, - |
| 6.61e-50 | FFCP PHASE1:Hg19::chr8:82354790..82354800,-#_196a1e80695e430036fd6c2a7aba20f0 | p@chr8:82354790..82354800, - |
| 8.5e-50 | FFCP PHASE2:Hg19::chr1:160113171..160113182,+#_5e26266508639eda1bd9aba5f39009d9 | p@chr1:160113171..160113182, + |
| 8.5e-50 | FFCP PHASE1:Hg19::chr1:160113171..160113182,+#_5e26266508639eda1bd9aba5f39009d9 | p@chr1:160113171..160113182, + |
| 1.4e-49 | FFCP PHASE2:Hg19::chr6:55039307..55039326,+#_571538cdc07a9d0e4ad8676ce34dbf1f | p1@HCRTR2 |
| 1.4e-49 | FFCP PHASE1:Hg19::chr6:55039307..55039326,+#_571538cdc07a9d0e4ad8676ce34dbf1f | p1@HCRTR2 |
| 1.8e-49 | FFCP PHASE2:Hg19::chr8:23127683..23127694,+#_8bc3343a959b45c83ecc69cc9450ee5d | p8@R3HCC1 |
| 1.8e-49 | FFCP PHASE1:Hg19::chr8:23127683..23127694,+#_8bc3343a959b45c83ecc69cc9450ee5d | p8@R3HCC1 |
| 3.19e-45 | FFCP PHASE1:Hg19::chr15:60296481..60296492,+#_e332f5330ca40e08763f82040a5a979a | p7@FOXB1 |
| 3.19e-45 | FFCP PHASE2:Hg19::chr15:60296481..60296492,+#_e332f5330ca40e08763f82040a5a979a | p7@FOXB1 |
| 5.0e-45 | FFCP PHASE2:Hg19::chr3:58372039..58372043,+#_8997c0b62542a94f3a8fd5b488cf45cf | p@chr3:58372039..58372043, + |
| 5.0e-45 | FFCP PHASE1:Hg19::chr3:58372039..58372043,+#_8997c0b62542a94f3a8fd5b488cf45cf | p@chr3:58372039..58372043, + |
| 7.83e-45 | FFCP PHASE2:Hg19::chr1:160112787..160112798,+#_102e1a564dddb8ec750f7582f49936b6 | p12@ATP1A2 |
| 7.83e-45 | FFCP PHASE1:Hg19::chr1:160112787..160112798,+#_102e1a564dddb8ec750f7582f49936b6 | p12@ATP1A2 |
| 9.79e-45 | FFCP PHASE1:Hg19::chr22:29885906..29885916,+#_51a0d83eef9a6b7b1f3dfefdfbbdc72e | p@chr22:29885906..29885916, + |
| 9.79e-45 | FFCP PHASE2:Hg19::chr8:28748765..28748785,+#_51a0d83eef9a6b7b1f3dfefdfbbdc72e | p10@HMBOX1 |
| 9.79e-45 | FFCP PHASE1:Hg19::chr8:28748765..28748785,+#_51a0d83eef9a6b7b1f3dfefdfbbdc72e | p10@HMBOX1 |
| 9.79e-45 | FFCP PHASE2:Hg19::chr22:29885906..29885916,+#_51a0d83eef9a6b7b1f3dfefdfbbdc72e | p@chr22:29885906..29885916, + |
| 2.39e-44 | FFCP PHASE1:Hg19::chr18:74691000..74691005,-#_a5dde17471f2ba14d930a5746f79598d | p@chr18:74691000..74691005, - |
| 2.39e-44 | FFCP PHASE2:Hg19::chr18:74691000..74691005,-#_a5dde17471f2ba14d930a5746f79598d | p@chr18:74691000..74691005, - |
| 2.39e-44 | FFCP PHASE2:Hg19::chr17:42983463..42983466,-#_a5dde17471f2ba14d930a5746f79598d | p45@GFAP |
| 2.39e-44 | FFCP PHASE1:Hg19::chr17:42983463..42983466,-#_a5dde17471f2ba14d930a5746f79598d | p45@GFAP |
| 2.98e-44 | FFCP PHASE2:Hg19::chr7:12544061..12544073,+#_3531aea7094ec2fb281e504378e80d4d | p1@ENST00000424453 |
| 2.98e-44 | FFCP PHASE1:Hg19::chr7:12544061..12544073,+#_3531aea7094ec2fb281e504378e80d4d | p1@ENST00000424453 |
| 3.72e-44 | FFCP PHASE1:Hg19::chr13:70682590..70682601,-#_b3c735efce18f0012405783f376b1125 | p3@KLHL1 |
| 3.72e-44 | FFCP PHASE2:Hg19::chr13:70682590..70682601,-#_b3c735efce18f0012405783f376b1125 | p3@KLHL1 |
| 4.65e-44 | FFCP PHASE2:Hg19::chr8:81639875..81639889,-#_08490d8609d726bc2206b0ea625df6bd | p@chr8:81639875..81639889, - |
| 4.65e-44 | FFCP PHASE1:Hg19::chr8:81639875..81639889,-#_08490d8609d726bc2206b0ea625df6bd | p@chr8:81639875..81639889, - |
| 4.89e-41 | FFCP PHASE1:Hg19::chr12:72332618..72332632,+#_8bc17943e166a555c1c1b0ce78b36acf | p1@TPH2 |
| 4.89e-41 | FFCP PHASE2:Hg19::chr12:72332618..72332632,+#_8bc17943e166a555c1c1b0ce78b36acf | p1@TPH2 |
| 1.34e-40 | FFCP PHASE1:Hg19::chr14:62010202..62010207,-#_7d10ca16a0999b296bbec1c154932281 | p@chr14:62010202..62010207, - |
| 1.34e-40 | FFCP PHASE2:Hg19::chr14:62010202..62010207,-#_7d10ca16a0999b296bbec1c154932281 | p@chr14:62010202..62010207, - |
| 1.64e-40 | FFCP PHASE1:Hg19::chr8:24775490..24775500,+#_354be25afef1b0b5aef4ad4eccf5d198 | p@chr8:24775490..24775500, + |
| 1.64e-40 | FFCP PHASE2:Hg19::chr8:24775490..24775500,+#_354be25afef1b0b5aef4ad4eccf5d198 | p@chr8:24775490..24775500, + |
| 2.01e-40 | FFCP PHASE2:Hg19::chr4:67195068..67195099,-#_e812a4f14505619b72dedec8be94310a | p@chr4:67195068..67195099, - |
| 2.01e-40 | FFCP PHASE1:Hg19::chr4:67195068..67195099,-#_e812a4f14505619b72dedec8be94310a | p@chr4:67195068..67195099, - |
| 2.46e-40 | FFCP PHASE2:Hg19::chr19:35789028..35789044,+#_f27aeee94271873602a952f1aa9e4fc0 | p@chr19:35789028..35789044, + |
| 2.46e-40 | FFCP PHASE2:Hg19::chr1:155291376..155291428,+#_f27aeee94271873602a952f1aa9e4fc0 | p6@RUSC1 |
| 2.46e-40 | FFCP PHASE1:Hg19::chr19:35789028..35789044,+#_f27aeee94271873602a952f1aa9e4fc0 | p@chr19:35789028..35789044, + |
| 2.46e-40 | FFCP PHASE1:Hg19::chr1:155291376..155291428,+#_f27aeee94271873602a952f1aa9e4fc0 | p6@RUSC1 |
| 3.01e-40 | FFCP PHASE1:Hg19::chr1:24645071..24645074,+#_facf36022478794ed17a371c27645c70 | p@chr1:24645071..24645074, + |
| 3.01e-40 | FFCP PHASE2:Hg19::chr1:24645071..24645074,+#_facf36022478794ed17a371c27645c70 | p@chr1:24645071..24645074, + |
| 5.49e-40 | FFCP PHASE2:Hg19::chr2:179739649..179739660,-#_f783fbfcdc67062ae58ae3ce0a7a0281 | p@chr2:179739649..179739660, - |
| 5.49e-40 | FFCP PHASE1:Hg19::chr2:179739649..179739660,-#_f783fbfcdc67062ae58ae3ce0a7a0281 | p@chr2:179739649..179739660, - |
| 5.49e-40 | FFCP PHASE2:Hg19::chr6:33161034..33161047,-#_f783fbfcdc67062ae58ae3ce0a7a0281 | p@chr6:33161034..33161047, - |
| 5.49e-40 | FFCP PHASE1:Hg19::chr6:33161034..33161047,-#_f783fbfcdc67062ae58ae3ce0a7a0281 | p@chr6:33161034..33161047, - |
| 6.7e-40 | FFCP PHASE1:Hg19::chr6:151670422..151670433,+#_48447394dd80720fc38c844feccc9672 | p@chr6:151670422..151670433, + |
| 6.7e-40 | FFCP PHASE2:Hg19::chr6:151670422..151670433,+#_48447394dd80720fc38c844feccc9672 | p@chr6:151670422..151670433, + |
| 2.27e-37 | FFCP PHASE1:Hg19::chr11:121976070..121976081,-#_b1120b1037b646348a267c7dbf6af199 | p4@ENST00000534195 |
| 2.27e-37 | FFCP PHASE2:Hg19::chr11:121976070..121976081,-#_b1120b1037b646348a267c7dbf6af199 | p4@ENST00000534195 |
| 2.73e-37 | FFCP PHASE2:Hg19::chr2:25720514..25720525,-#_ad162b1fd6eba1088e263c9cc1ea50a1 | p16@DTNB |
| 2.73e-37 | FFCP PHASE1:Hg19::chr2:25720514..25720525,-#_ad162b1fd6eba1088e263c9cc1ea50a1 | p16@DTNB |
| 3.28e-37 | FFCP PHASE2:Hg19::chr17:42984370..42984375,-#_774565a11f816867f06c19b2867e63af | p42@GFAP |
| 3.28e-37 | FFCP PHASE1:Hg19::chr17:42984370..42984375,-#_774565a11f816867f06c19b2867e63af | p42@GFAP |
| 3.28e-37 | FFCP PHASE2:Hg19::chr17:11144580..11144595,+#_774565a11f816867f06c19b2867e63af | p2@SHISA6 |
| 3.28e-37 | FFCP PHASE1:Hg19::chr17:11144580..11144595,+#_774565a11f816867f06c19b2867e63af | p2@SHISA6 |
