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{{UBERON
{{UBERON
|id=UBERON:0001235
|alt_id=UBERON:FMA_15632-MA_0000118-XAO_0000165
|name=adrenal cortex
|namespace=
|def="Situated along the perimeter of the adrenal gland, the adrenal cortex mediates the stress response through the production of mineralocorticoids and glucocorticoids, including aldosterone and cortisol respectively. It is also a secondary site of androgen synthesis. [WP,unvetted]." [Wikipedia:Adrenal_cortex]
|xref=AAO:0011009;;BTO:0000045;;EFO:0000237;;EMAPA:18427;;EV:0100136;;FMA:15632;;GAID:447;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray1185.png/200px-Gray1185.png;;MA:0000118;;MAT:0000494;;MESH:A.06.407.071.140;;ncithesaurus:Adrenal_Cortex;;SCTID:362584002;;VHOG:0001481;;XAO:0000165
|is_a=UBERON:0001851;;UBERON:0004120;;UBERON:0004121
|synonym="adrenal gland cortex" EXACT [];;"cortex (glandula suprarenalis)" EXACT [];;"cortex glandulae suprarenalis" RELATED [BTO:0000045];;"cortex of adrenal gland" EXACT [];;"cortex of suprarenal gland" EXACT [];;"suprarenal" RELATED [];;"suprarenal cortex" EXACT []
|comment=Taxon notes: Kardong states that mammals are the first to have distinct cortext and medulla, but this contradicts XAO
|comment=Taxon notes: Kardong states that mammals are the first to have distinct cortext and medulla, but this contradicts XAO
|alt_id=UBERON:FMA_15632-MA_0000118-XAO_0000165
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Situated along the perimeter of the adrenal gland, the adrenal cortex mediates the stress response through the production of mineralocorticoids and glucocorticoids, including aldosterone and cortisol respectively. It is also a secondary site of androgen synthesis. [WP,unvetted]." [Wikipedia:Adrenal_cortex]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0000926
|develops_from=UBERON:0000926
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001235
|is_a=UBERON:0001851 ;;UBERON:0004120
|is_obsolete=
|located_in=
|located_in=
|name=adrenal cortex
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002369
|part_of=UBERON:0002369
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=uberon_slim
|synonym="adrenal gland cortex" EXACT [];;"cortex (glandula suprarenalis)" EXACT [];;"cortex glandulae suprarenalis" RELATED LATIN [Wikipedia:Adrenal_cortex];;"cortex glandulae suprarenalis" RELATED [BTO:0000045];;"cortex of adrenal gland" EXACT [];;"cortex of suprarenal gland" EXACT [];;"suprarenal" RELATED [];;"suprarenal cortex" EXACT []
|union_of=
|xref=AAO:0011009;;BTO:0000045;;EFO:0000237;;EMAPA:18427;;EV:0100136;;FMA:15632;;GAID:447;;http://upload.wikimedia.org/wikipedia/commons/5/5c/Gray1185.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray1185.png/200px-Gray1185.png;;MA:0000118;;MAT:0000494;;MESH:A.06.407.071.140;;ncithesaurus:Adrenal_Cortex;;SCTID:362584002;;VHOG:0001481;;XAO:0000165
}}
}}

Latest revision as of 17:17, 12 September 2014

Name:adrenal cortex
Namespace:FANTOM
Definition:"Situated along the perimeter of the adrenal gland, the adrenal cortex mediates the stress response through the production of mineralocorticoids and glucocorticoids, including aldosterone and cortisol respectively. It is also a secondary site of androgen synthesis. [WP,unvetted]." [Wikipedia:Adrenal_cortex]
Xrefs:
links:

AAO:0011009
BTO:0000045
EFO:0000237
EMAPA:18427
EV:0100136
FMA:15632
GAID:447
[ Gray1185.png Gray1185.png]
[ 200px-Gray1185.png 200px-Gray1185.png]
MA:0000118
MAT:0000494
MESH:A.06.407.071.140
ncithesaurus:Adrenal_Cortex
SCTID:362584002
VHOG:0001481

XAO:0000165
Synonyms: "adrenal gland cortex" EXACT []
"cortex (glandula suprarenalis)" EXACT []
"cortex glandulae suprarenalis" RELATED LATIN [Wikipedia:Adrenal_cortex]
"cortex glandulae suprarenalis" RELATED [BTO:0000045]
"cortex of adrenal gland" EXACT []
"cortex of suprarenal gland" EXACT []
"suprarenal" RELATED []
"suprarenal cortex" EXACT []
Comments:Taxon notes: Kardong states that mammals are the first to have distinct cortext and medulla, but this contradicts XAO
Alt_id: UBERON:FMA_15632-MA_0000118-XAO_0000165
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001851(cortex),UBERON:0004120(mesoderm-derived structure)
develops_from:UBERON:0000926(mesoderm)
part_of:UBERON:0002369(adrenal gland)



Children

is a:FF:10810-111A9 (adrenal cortex adenocarcinoma cell line:SW-13)
part of:CL:0002097 (cortical cell of adrenal gland)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001235 (adrenal cortex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.39e-66FFCP PHASE1:Hg19::chr7:111033178..111033202,-#_005d3c8122c7a4c7c5d9de2135f40160p11@IMMP2L
2.39e-66FFCP PHASE1:Hg19::chr5:92020578..92020613,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:92020578..92020613, -
2.39e-66FFCP PHASE2:Hg19::chr4:67618078..67618083,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr4:67618078..67618083, -
2.39e-66FFCP PHASE2:Hg19::chr3:191075256..191075261,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:191075256..191075261, +
2.39e-66FFCP PHASE1:Hg19::chr14:47289600..47289605,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr14:47289600..47289605, -
2.39e-66FFCP PHASE1:Hg19::chr4:106656882..106656914,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr4:106656882..106656914, +
2.39e-66FFCP PHASE1:Hg19::chr1:197099062..197099073,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr1:197099062..197099073, -
2.39e-66FFCP PHASE2:Hg19::chr3:161200616..161200619,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:161200616..161200619, +
2.39e-66FFCP PHASE2:Hg19::chr13:90020369..90020372,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr13:90020369..90020372, -
2.39e-66FFCP PHASE1:Hg19::chr3:165535021..165535029,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:165535021..165535029, -
2.39e-66FFCP PHASE2:Hg19::chr7:15802479..15802491,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:15802479..15802491, +
2.39e-66FFCP PHASE2:Hg19::chr21:21703199..21703203,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr21:21703199..21703203, -
2.39e-66FFCP PHASE1:Hg19::chr21:23120868..23120880,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr21:23120868..23120880, +
2.39e-66FFCP PHASE2:Hg19::chr2:150961763..150961789,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr2:150961763..150961789, -
2.39e-66FFCP PHASE1:Hg19::chr4:67618078..67618083,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr4:67618078..67618083, -
2.39e-66FFCP PHASE2:Hg19::chr5:107631933..107631940,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:107631933..107631940, -
2.39e-66FFCP PHASE1:Hg19::chr13:67730380..67730387,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr13:67730380..67730387, +
2.39e-66FFCP PHASE2:Hg19::chr7:111033178..111033202,-#_005d3c8122c7a4c7c5d9de2135f40160p11@IMMP2L
2.39e-66FFCP PHASE1:Hg19::chr7:111054273..111054319,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:111054273..111054319, -
2.39e-66FFCP PHASE1:Hg19::chr11:22707203..22707221,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr11:22707203..22707221, +
2.39e-66FFCP PHASE2:Hg19::chr5:92020578..92020613,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:92020578..92020613, -
2.39e-66FFCP PHASE2:Hg19::chr12:86272170..86272176,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr12:86272170..86272176, +
2.39e-66FFCP PHASE2:Hg19::chr17:4847813..4847819,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr17:4847813..4847819, +
2.39e-66FFCP PHASE1:Hg19::chr3:190999916..190999925,-#_005d3c8122c7a4c7c5d9de2135f40160p13@UTS2D
2.39e-66FFCP PHASE2:Hg19::chr7:80365907..80365910,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:80365907..80365910, -
2.39e-66FFCP PHASE1:Hg19::chr3:111812180..111812186,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:111812180..111812186, +
2.39e-66FFCP PHASE2:Hg19::chr1:197099062..197099073,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr1:197099062..197099073, -
2.39e-66FFCP PHASE1:Hg19::chr2:150961763..150961789,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr2:150961763..150961789, -
2.39e-66FFCP PHASE1:Hg19::chr1:218221538..218221546,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr1:218221538..218221546, -
2.39e-66FFCP PHASE2:Hg19::chr3:165535021..165535029,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:165535021..165535029, -
2.39e-66FFCP PHASE1:Hg19::chr5:107631933..107631940,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:107631933..107631940, -
2.39e-66FFCP PHASE2:Hg19::chr21:23120868..23120880,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr21:23120868..23120880, +
2.39e-66FFCP PHASE1:Hg19::chr17:4847813..4847819,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr17:4847813..4847819, +
2.39e-66FFCP PHASE2:Hg19::chr3:190999916..190999925,-#_005d3c8122c7a4c7c5d9de2135f40160p13@UTS2D
2.39e-66FFCP PHASE2:Hg19::chr7:111054273..111054319,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:111054273..111054319, -
2.39e-66FFCP PHASE2:Hg19::chr16:33408291..33408306,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr16:33408291..33408306, +
2.39e-66FFCP PHASE1:Hg19::chr7:80365907..80365910,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:80365907..80365910, -
2.39e-66FFCP PHASE2:Hg19::chr12:91218399..91218404,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr12:91218399..91218404, +
2.39e-66FFCP PHASE2:Hg19::chr17:8639180..8639188,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr17:8639180..8639188, -
2.39e-66FFCP PHASE2:Hg19::chr9:13323362..13323373,-#_005d3c8122c7a4c7c5d9de2135f40160p1@ENST00000433817
2.39e-66FFCP PHASE1:Hg19::chr7:111051726..111051739,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:111051726..111051739, -
2.39e-66FFCP PHASE2:Hg19::chr3:111812180..111812186,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:111812180..111812186, +
2.39e-66FFCP PHASE2:Hg19::chr4:67651552..67651563,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr4:67651552..67651563, +
2.39e-66FFCP PHASE2:Hg19::chr1:218221538..218221546,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr1:218221538..218221546, -
2.39e-66FFCP PHASE2:Hg19::chr11:22707203..22707221,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr11:22707203..22707221, +
2.39e-66FFCP PHASE1:Hg19::chr3:181328459..181328465,+#_005d3c8122c7a4c7c5d9de2135f40160p27@SOX2-OT
2.39e-66FFCP PHASE1:Hg19::chr9:13323362..13323373,-#_005d3c8122c7a4c7c5d9de2135f40160p1@ENST00000433817
2.39e-66FFCP PHASE1:Hg19::chr14:47289641..47289643,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr14:47289641..47289643, -
2.39e-66FFCP PHASE1:Hg19::chr1:197099076..197099083,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr1:197099076..197099083, -
2.39e-66FFCP PHASE2:Hg19::chr8:59953375..59953393,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr8:59953375..59953393, -
2.39e-66FFCP PHASE1:Hg19::chr17:8639180..8639188,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr17:8639180..8639188, -
2.39e-66FFCP PHASE2:Hg19::chr5:13428853..13428866,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:13428853..13428866, +
2.39e-66FFCP PHASE1:Hg19::chr4:67651552..67651563,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr4:67651552..67651563, +
2.39e-66FFCP PHASE2:Hg19::chr5:107631942..107631951,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:107631942..107631951, -
2.39e-66FFCP PHASE1:Hg19::chr3:190999951..190999959,-#_005d3c8122c7a4c7c5d9de2135f40160p15@UTS2D
2.39e-66FFCP PHASE2:Hg19::chr7:111051726..111051739,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:111051726..111051739, -
2.39e-66FFCP PHASE2:Hg19::chr3:85553737..85553767,+#_005d3c8122c7a4c7c5d9de2135f40160p1@AB646740, p1@AB646741, p1@AB646742, p1@AB646743
2.39e-66FFCP PHASE1:Hg19::chr8:59953375..59953393,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr8:59953375..59953393, -
2.39e-66FFCP PHASE2:Hg19::chr3:181328459..181328465,+#_005d3c8122c7a4c7c5d9de2135f40160p27@SOX2-OT
2.39e-66FFCP PHASE1:Hg19::chr5:13428853..13428866,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:13428853..13428866, +
2.39e-66FFCP PHASE2:Hg19::chr7:80365917..80365926,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:80365917..80365926, -
2.39e-66FFCP PHASE2:Hg19::chr1:197099076..197099083,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr1:197099076..197099083, -
2.39e-66FFCP PHASE1:Hg19::chr5:107631942..107631951,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:107631942..107631951, -
2.39e-66FFCP PHASE1:Hg19::chr3:85553737..85553767,+#_005d3c8122c7a4c7c5d9de2135f40160p1@AB646740, p1@AB646741, p1@AB646742, p1@AB646743
2.39e-66FFCP PHASE2:Hg19::chr13:80914790..80914795,-#_005d3c8122c7a4c7c5d9de2135f40160p41@SPRY2
2.39e-66FFCP PHASE2:Hg19::chr3:190999951..190999959,-#_005d3c8122c7a4c7c5d9de2135f40160p15@UTS2D
2.39e-66FFCP PHASE1:Hg19::chr21:23058648..23058654,-#_005d3c8122c7a4c7c5d9de2135f40160p1@ENST00000416182
2.39e-66FFCP PHASE1:Hg19::chr7:80365917..80365926,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:80365917..80365926, -
2.39e-66FFCP PHASE1:Hg19::chr7:111051766..111051788,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:111051766..111051788, -
2.39e-66FFCP PHASE2:Hg19::chr14:47289600..47289605,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr14:47289600..47289605, -
2.39e-66FFCP PHASE1:Hg19::chr5:28339690..28339727,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:28339690..28339727, -
2.39e-66FFCP PHASE2:Hg19::chr4:35102522..35102546,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr4:35102522..35102546, +
2.39e-66FFCP PHASE2:Hg19::chr21:23058648..23058654,-#_005d3c8122c7a4c7c5d9de2135f40160p1@ENST00000416182
2.39e-66FFCP PHASE2:Hg19::chr13:67730380..67730387,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr13:67730380..67730387, +
2.39e-66FFCP PHASE2:Hg19::chr18:39541931..39541944,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr18:39541931..39541944, +
2.39e-66FFCP PHASE2:Hg19::chr7:111051766..111051788,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:111051766..111051788, -
2.39e-66FFCP PHASE1:Hg19::chr7:152166747..152166750,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:152166747..152166750, +
2.39e-66FFCP PHASE1:Hg19::chr4:35102522..35102546,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr4:35102522..35102546, +
2.39e-66FFCP PHASE2:Hg19::chr5:28339690..28339727,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:28339690..28339727, -
2.39e-66FFCP PHASE1:Hg19::chr5:80434077..80434082,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:80434077..80434082, +
2.39e-66FFCP PHASE2:Hg19::chr7:80365936..80365942,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:80365936..80365942, -
2.39e-66FFCP PHASE1:Hg19::chr1:218388686..218388689,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr1:218388686..218388689, -
2.39e-66FFCP PHASE1:Hg19::chr3:175131802..175131807,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:175131802..175131807, -
2.39e-66FFCP PHASE1:Hg19::chr18:39541931..39541944,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr18:39541931..39541944, +
2.39e-66FFCP PHASE1:Hg19::chr13:90020369..90020372,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr13:90020369..90020372, -
2.39e-66FFCP PHASE2:Hg19::chr7:152166747..152166750,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:152166747..152166750, +
2.39e-66FFCP PHASE1:Hg19::chr21:23066072..23066082,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr21:23066072..23066082, +
2.39e-66FFCP PHASE1:Hg19::chr7:80365936..80365942,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr7:80365936..80365942, -
2.39e-66FFCP PHASE1:Hg19::chr6:113454693..113454704,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr6:113454693..113454704, +
2.39e-66FFCP PHASE1:Hg19::chr3:147869637..147869641,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:147869637..147869641, +
2.39e-66FFCP PHASE2:Hg19::chr5:103625303..103625326,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:103625303..103625326, +
2.39e-66FFCP PHASE2:Hg19::chr5:80434077..80434082,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:80434077..80434082, +
2.39e-66FFCP PHASE2:Hg19::chr1:218388686..218388689,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr1:218388686..218388689, -
2.39e-66FFCP PHASE2:Hg19::chr3:175131802..175131807,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:175131802..175131807, -
2.39e-66FFCP PHASE2:Hg19::chr14:47289641..47289643,-#_005d3c8122c7a4c7c5d9de2135f40160p@chr14:47289641..47289643, -
2.39e-66FFCP PHASE1:Hg19::chr3:181328499..181328502,+#_005d3c8122c7a4c7c5d9de2135f40160p32@SOX2-OT
2.39e-66FFCP PHASE2:Hg19::chr4:35107931..35107966,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr4:35107931..35107966, +
2.39e-66FFCP PHASE1:Hg19::chr5:103625303..103625326,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr5:103625303..103625326, +
2.39e-66FFCP PHASE1:Hg19::chr12:86272170..86272176,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr12:86272170..86272176, +
2.39e-66FFCP PHASE1:Hg19::chr3:191075031..191075040,+#_005d3c8122c7a4c7c5d9de2135f40160p@chr3:191075031..191075040, +

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