FF:646-21G7: Difference between revisions

Latest revision as of 19:19, 4 June 2020

Name:	kidney, neonate N00
Species:	Mouse (Mus musculus)
Library ID:	CNhs11214
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	kidney
dev stage	0 day neonate
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005859

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11214		CAGE		DRX009009		DRR009883

Accession ID Mm9

Library id		BAM		CTSS
CNhs11214		DRZ001308		DRZ002691

Accession ID Mm10

Library id		BAM		CTSS
CNhs11214		DRZ012658		DRZ014041

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11214

0	0
1	0
10	0
100	0
1000	-0.00633
1001	0.0621
1002	0.435
1003	-0.0236
1004	0
1005	0
1006	-0.0619
1007	0.134
1008	0
1009	0.107
101	0.0246
1010	0
1011	0
1012	0.0324
1013	0.129
1014	0.173
1015	0.065
1016	0.302
1017	0
1018	0
1019	0
102	0
1020	0
1021	0.0294
1022	0.136
1023	0
1024	0.0829
1025	0.107
1026	0
1027	0.0294
1028	0.0294
1029	0.296
103	0.113
1030	0
1031	0.288
1032	0.0498
1033	-0.00949
1034	0.0873
1035	0.0294
1036	-0.0676
1037	0
1038	0.194
1039	0.104
104	0
1040	0.216
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11214

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00414
MA0003.1	MA0003.1	0.646
MA0004.1	MA0004.1	0.674
MA0006.1	MA0006.1	0.275
MA0007.1	MA0007.1	0.638
MA0009.1	MA0009.1	0.734
MA0014.1	MA0014.1	0.816
MA0017.1	MA0017.1	0.00364
MA0018.2	MA0018.2	0.00155
MA0019.1	MA0019.1	0.534
MA0024.1	MA0024.1	0.109
MA0025.1	MA0025.1	0.105
MA0027.1	MA0027.1	0.839
MA0028.1	MA0028.1	0.156
MA0029.1	MA0029.1	0.351
MA0030.1	MA0030.1	0.0316
MA0031.1	MA0031.1	0.0634
MA0035.2	MA0035.2	1.63583e-4
MA0038.1	MA0038.1	0.282
MA0039.2	MA0039.2	0.715
MA0040.1	MA0040.1	0.77
MA0041.1	MA0041.1	0.451
MA0042.1	MA0042.1	0.944
MA0043.1	MA0043.1	0.0115
MA0046.1	MA0046.1	8.40061e-100
MA0047.2	MA0047.2	0.101
MA0048.1	MA0048.1	0.154
MA0050.1	MA0050.1	0.221
MA0051.1	MA0051.1	0.216
MA0052.1	MA0052.1	3.41175e-5
MA0055.1	MA0055.1	0.101
MA0057.1	MA0057.1	0.531
MA0058.1	MA0058.1	0.526
MA0059.1	MA0059.1	0.0322
MA0060.1	MA0060.1	0.18
MA0061.1	MA0061.1	0.0424
MA0062.2	MA0062.2	5.64293e-4
MA0065.2	MA0065.2	0.914
MA0066.1	MA0066.1	0.137
MA0067.1	MA0067.1	0.362
MA0068.1	MA0068.1	0.73
MA0069.1	MA0069.1	0.0711
MA0070.1	MA0070.1	0.734
MA0071.1	MA0071.1	0.491
MA0072.1	MA0072.1	0.11
MA0073.1	MA0073.1	0.613
MA0074.1	MA0074.1	0.577
MA0076.1	MA0076.1	0.126
MA0077.1	MA0077.1	0.767
MA0078.1	MA0078.1	0.0119
MA0079.2	MA0079.2	0.227
MA0080.2	MA0080.2	7.08709e-5
MA0081.1	MA0081.1	0.0429
MA0083.1	MA0083.1	0.619
MA0084.1	MA0084.1	0.912
MA0087.1	MA0087.1	0.684
MA0088.1	MA0088.1	0.084
MA0090.1	MA0090.1	0.054
MA0091.1	MA0091.1	0.083
MA0092.1	MA0092.1	0.8
MA0093.1	MA0093.1	0.68
MA0099.2	MA0099.2	0.0262
MA0100.1	MA0100.1	0.0622
MA0101.1	MA0101.1	0.449
MA0102.2	MA0102.2	0.277
MA0103.1	MA0103.1	0.718
MA0104.2	MA0104.2	0.0114
MA0105.1	MA0105.1	9.59455e-5
MA0106.1	MA0106.1	0.523
MA0107.1	MA0107.1	0.428
MA0108.2	MA0108.2	0.0937
MA0111.1	MA0111.1	0.622
MA0112.2	MA0112.2	0.012
MA0113.1	MA0113.1	0.227
MA0114.1	MA0114.1	0.0141
MA0115.1	MA0115.1	0.661
MA0116.1	MA0116.1	5.42836e-5
MA0117.1	MA0117.1	0.301
MA0119.1	MA0119.1	0.0983
MA0122.1	MA0122.1	0.504
MA0124.1	MA0124.1	0.8
MA0125.1	MA0125.1	0.575
MA0131.1	MA0131.1	0.513
MA0135.1	MA0135.1	0.974
MA0136.1	MA0136.1	1.69119e-6
MA0137.2	MA0137.2	0.317
MA0138.2	MA0138.2	0.0624
MA0139.1	MA0139.1	0.172
MA0140.1	MA0140.1	0.00111
MA0141.1	MA0141.1	0.744
MA0142.1	MA0142.1	0.00993
MA0143.1	MA0143.1	0.942
MA0144.1	MA0144.1	0.71
MA0145.1	MA0145.1	0.547
MA0146.1	MA0146.1	0.694
MA0147.1	MA0147.1	0.00399
MA0148.1	MA0148.1	0.674
MA0149.1	MA0149.1	0.242
MA0150.1	MA0150.1	0.0875
MA0152.1	MA0152.1	0.012
MA0153.1	MA0153.1	3.14361e-47
MA0154.1	MA0154.1	0.027
MA0155.1	MA0155.1	0.559
MA0156.1	MA0156.1	2.24819e-4
MA0157.1	MA0157.1	0.26
MA0159.1	MA0159.1	0.225
MA0160.1	MA0160.1	0.652
MA0162.1	MA0162.1	0.903
MA0163.1	MA0163.1	4.18277e-4
MA0164.1	MA0164.1	0.866
MA0258.1	MA0258.1	0.0166
MA0259.1	MA0259.1	0.261

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11214

Novel motif	Logo	P-value
1	1	0.0208
10	10	0.128
100	100	0.83
101	101	0.291
102	102	0.356
103	103	0.668
104	104	0.971
105	105	0.648
106	106	0.754
107	107	0.126
108	108	0.228
109	109	0.314
11	11	0.119
110	110	0.186
111	111	0.0162
112	112	0.648
113	113	0.997
114	114	0.0389
115	115	0.604
116	116	0.164
117	117	0.0117
118	118	0.215
119	119	0.581
12	12	0.651
120	120	0.286
121	121	0.908
122	122	0.54
123	123	0.0841
124	124	0.533
125	125	0.115
126	126	0.691
127	127	0.187
128	128	0.847
129	129	0.328
13	13	0.771
130	130	0.282
131	131	0.276
132	132	0.914
133	133	0.254
134	134	0.643
135	135	0.806
136	136	0.174
137	137	0.0756
138	138	0.00533
139	139	0.12
14	14	0.778
140	140	0.943
141	141	0.486
142	142	0.311
143	143	0.228
144	144	0.46
145	145	0.913
146	146	0.682
147	147	0.419
148	148	0.83
149	149	0.373
15	15	0.219
150	150	0.297
151	151	0.0902
152	152	0.177
153	153	0.39
154	154	0.743
155	155	0.947
156	156	4.07844e-7
157	157	0.889
158	158	0.93
159	159	0.118
160	160	0.806
161	161	0.834
162	162	0.305
163	163	0.232
164	164	0.278
165	165	0.401
166	166	0.574
167	167	0.717
168	168	0.637
169	169	0.774
17	17	0.654
18	18	0.0211
19	19	0.391
2	2	0.414
20	20	0.824
21	21	0.624
22	22	0.894
23	23	0.233
24	24	0.706
25	25	0.114
26	26	0.672
27	27	0.743
28	28	0.309
29	29	0.0522
3	3	0.35
30	30	0.426
31	31	0.615
32	32	0.0727
33	33	0.686
34	34	0.913
35	35	0.0709
36	36	0.0177
37	37	0.427
38	38	0.361
39	39	0.279
4	4	0.91
40	40	0.332
41	41	0.0849
42	42	0.272
43	43	0.22
44	44	0.206
45	45	0.771
46	46	0.213
47	47	0.0993
48	48	0.324
49	49	0.196
5	5	0.216
50	50	0.679
51	51	0.616
52	52	0.135
53	53	0.649
54	54	0.328
55	55	0.216
56	56	0.25
57	57	0.351
58	58	0.526
59	59	0.142
6	6	0.785
60	60	0.605
61	61	0.963
62	62	0.0672
63	63	0.274
64	64	0.196
65	65	0.128
66	66	0.546
67	67	0.0166
68	68	0.126
69	69	0.595
7	7	0.453
70	70	0.0374
71	71	0.0368
72	72	0.231
73	73	0.566
74	74	0.267
75	75	0.0259
76	76	0.738
77	77	0.955
78	78	0.824
79	79	0.282
8	8	0.0547
80	80	0.0487
81	81	0.113
82	82	0.0871
83	83	0.119
84	84	0.654
85	85	0.0868
86	86	0.291
87	87	0.00289
88	88	0.456
89	89	0.349
9	9	0.821
90	90	0.17
91	91	0.831
92	92	0.259
93	93	0.681
94	94	0.0673
95	95	0.256
96	96	0.228
97	97	0.561
98	98	0.513
99	99	0.962

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11214

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011396 mouse kidney- neonate N00 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000479 (tissue)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000304 (mouse neonate N0 sample)
0011396 (mouse kidney- neonate N00 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002113,UBERON:0002100,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0003103,UBERON:0009569,UBERON:0005291,UBERON:0000489,UBERON:0005177,UBERON:0003104,UBERON:0005172,UBERON:0003918,UBERON:0006598,UBERON:0005173,UBERON:0002532,UBERON:0001008,UBERON:0002417,UBERON:0000916,UBERON:0009142,UBERON:0006603,UBERON:0005095,UBERON:0007687
+|DRA_sample_Accession=CAGE@SAMD00005859
+|accession_numbers=CAGE;DRX009009;DRR009883;DRZ001308;DRZ002691;DRZ012658;DRZ014041
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000479,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000004,FF:0000303,FF:0000304,FF:0011396
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:83664365..83664383,+!p1@Hnf1b!1.89!76.24!Hnf1b;;chr10:22539932..22539956,-!p1@Tcf21!1.81!163.00!Tcf21;;chr2:24331085..24331100,-!p1@Pax8!1.75!55.48!Pax8;;chr6:52190467..52190500,-!p1@Hoxa10!1.71!50.01!Hoxa10;;chr11:96143666..96143725,+!p1@Hoxb8!1.61!45.66!Hoxb8;;chr11:96153767..96153822,+!p1@Hoxb6!1.58!56.81!Hoxb6;;chr2:104966766..104966786,+!p1@Wt1!1.56!54.92!Wt1;;chr1:120524520..120524528,+!p1@Tfcp2l1!1.55!96.02!Tfcp2l1;;chr19:59533221..59533271,+!p1@Emx2!1.53!40.05!Emx2;;chr10:88969376..88969395,-!p1@Nr1h4!1.51!31.28!Nr1h4;;chr15:102828658..102828678,+!p1@Hoxc6!1.48!29.04!Hoxc6;;chr6:52176164..52176195,-!p1@Hoxa9!1.46!34.02!Hoxa9;;chr2:163372884..163372904,+!p1@Hnf4a!1.43!25.95!Hnf4a;;chr11:34108085..34108092,-!p1@Foxi1!1.34!20.69!Foxi1;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.33!25.88!Pou3f3;;chr2:74549968..74549996,+!p1@Hoxd3!1.32!24.83!Hoxd3;;chr11:84339016..84339044,-!p1@Lhx1!1.30!18.73!Lhx1;;chr2:74517609..74517621,+!p3@Hoxd11!1.29!18.52!Hoxd11;;chr2:9800207..9800234,-!p1@Gata3!1.27!52.53!Gata3;;chr2:104966874..104966907,+!p2@Wt1!1.27!17.60!Wt1;;chr5:140019865..140019886,+!p1@Uncx!1.26!17.32!Uncx;;chr13:99124189..99124205,+!p1@Foxd1!1.23!24.34!Foxd1;;chr17:86087592..86087615,-!p1@Six2!1.22!15.57!Six2;;chr2:74529970..74529997,+!p1@Hoxd10!1.18!14.31!Hoxd10;;chr8:123640063..123640077,+!p1@Foxc2!1.17!25.18!Foxc2;;chr1:19202352..19202354,+!p2@Tfap2b!1.17!13.82!Tfap2b;;chr6:52163319..52163342,-!p1@Hoxa3!1.16!19.57!Hoxa3;;chr6:52184901..52184959,-!p2@Hoxa10!1.15!13.26!Hoxa10;;chr2:74536026..74536039,+!p1@Hoxd9!1.15!12.98!Hoxd9;;chr13:72101178..72101203,-!p1@Irx1!1.14!20.13!Irx1;;chr6:52195795..52195825,-!p1@Hoxa11!1.12!12.27!Hoxa11;;chr2:74520048..74520064,+!p1@Hoxd11!1.12!12.06!Hoxd11;;chr6:52190668..52190682,-!p3@Hoxa10!1.10!11.64!Hoxa10;;chr2:74550015..74550057,+!p2@Hoxd3!1.10!11.57!Hoxd3;;chr2:74536050..74536065,+!p2@Hoxd9!1.09!11.36!Hoxd9;;chr5:140019843..140019858,+!p2@Uncx!1.09!11.36!Uncx;;chr1:19199236..19199258,+!p1@Tfap2b!1.09!11.29!Tfap2b;;chr2:74520343..74520383,+!p4@Hoxd11!1.07!10.66!Hoxd11;;chr2:74517742..74517758,+!p2@Hoxd11!1.06!10.52!Hoxd11;;chr6:85137520..85137563,+!p1@Emx1!1.06!10.38!Emx1;;chr11:96147952..96147967,+!p1@Hoxb7!1.04!12.48!Hoxb7;;chr2:103264213..103264233,+!p1@Elf5!1.04!10.03!Elf5;;chr6:52195763..52195792,-!p2@Hoxa11!1.04!9.96!Hoxa11;;chr15:35225845..35225867,+!p1@Osr2!1.02!23.99!Osr2;;chr12:87762578..87762612,+!p1@Esrrb!1.01!9.33!Esrrb;;chr2:74542680..74542705,+!p6@Hoxd8!1.01!9.33!Hoxd8;;chr5:115421065..115421088,-!p1@Hnf1a!1.01!9.19!Hnf1a;;chr7:6649134..6649167,-!p1@Zim1!1.00!49.80!Zim1;;chr15:102797288..102797302,+!p1@Hoxc10!0.99!8.77!Hoxc10;;chr15:102828642..102828653,+!p2@Hoxc6!0.99!8.77!Hoxc6;;chr11:96143843..96143868,+!p3@Hoxb8!0.99!8.70!Hoxb8;;chr7:17647736..17647772,-!p1@Hif3a!0.98!30.86!Hif3a;;chr3:29912058..29912071,-!p6@Mecom!0.98!9.89!Mecom;;chr10:102491237..102491291,-!p2@Alx1!0.98!8.56!Alx1;;chr1:189432881..189432903,+!p2@Esrrg!0.97!8.35!Esrrg;;chr14:98568971..98569025,-!p1@Dach1!0.96!65.16!Dach1;;chr6:52190840..52190853,-!p5@Hoxa10!0.96!8.21!Hoxa10;;chr10:50614546..50614568,+!p@chr10:50614546..50614568,+!0.96!8.07!Sim1;;chr2:74543397..74543435,+!p2@Hoxd8!0.95!8.00!Hoxd8;;chr11:96145450..96145517,+!p2@Hoxb7!0.94!11.92!Hoxb7;;chr2:104966933..104966966,+!p3@Wt1!0.93!7.57!Wt1;;chr1:19202185..19202187,+!p9@Tfap2b!0.91!7.08!Tfap2b;;chr13:72101161..72101177,-!p2@Irx1!0.90!9.82!Irx1;;chr2:74536071..74536083,+!p4@Hoxd9!0.90!6.94!Hoxd9;;chr2:74529998..74530020,+!p2@Hoxd10!0.90!6.94!Hoxd10;;chr2:9809357..9809371,-!p2@Gata3!0.90!6.87!Gata3;;chr2:74543103..74543135,+!p4@Hoxd8!0.89!6.73!Hoxd8;;chr6:52190858..52190873,-!p4@Hoxa10!0.88!6.52!Hoxa10;;chr2:103143336..103143367,-!p1@Ehf!0.87!10.59!Ehf;;chr14:22807083..22807104,-!p1@Zfp503!0.86!114.88!Zfp503;;chr11:85646427..85646451,+!p4@Tbx2!0.86!11.29!Tbx2;;chr13:72101141..72101158,-!p3@Irx1!0.86!8.00!Irx1;;chr2:74543202..74543213,+!p3@Hoxd8!0.86!6.31!Hoxd8;;chr16:94085471..94085495,+!p1@Sim2!0.86!6.24!Sim2;;chr5:140019816..140019825,+!p3@Uncx!0.86!6.17!Uncx;;chr2:74542918..74542971,+!p1@Hoxd8!0.84!9.19!Hoxd8;;chr11:96143962..96144035,+!p2@Hoxb8!0.84!5.89!Hoxb8;;chr1:189432907..189432926,+!p3@Esrrg!0.83!5.82!Esrrg;;chr2:105003277..105003280,+!p5@Wt1!0.83!5.75!Wt1;;chr15:102797225..102797243,+!p2@Hoxc10!0.82!5.54!Hoxc10;;chr8:94325321..94325366,-!p1@Irx3!0.81!14.17!Irx3;;chr3:30408603..30408668,-!p1@Mecom!0.81!13.26!Mecom;;chr2:103123925..103123959,-!p3@Ehf!0.81!5.47!Ehf;;chr11:85646303..85646329,+!p1@Tbx2!0.80!38.08!Tbx2;;chr14:17407878..17407926,-!p1@Rarb!0.80!12.62!Rarb;;chr14:22808697..22808715,-!p4@Zfp503!0.80!6.31!Zfp503;;chr8:123640090..123640101,+!p2@Foxc2!0.80!6.03!Foxc2;;chr13:31898637..31898653,+!p2@Foxc1!0.79!9.61!Foxc1;;chr11:83666422..83666446,+!p4@Hnf1b!0.79!5.12!Hnf1b;;chr2:74535796..74535808,+!p3@Hoxd9!0.78!4.98!Hoxd9;;chr1:4483679..4483695,-!p1@Sox17!0.77!24.97!Sox17;;chr19:28754692..28754757,-!p1@Glis3!0.77!21.81!Glis3;;chr10:119913546..119913583,-!p3@Hmga2!0.77!10.94!Hmga2;;chr11:96160426..96160443,+!p2@Hoxb6!0.77!4.91!Hoxb6;;chr10:126778916..126778974,-!p1@Gli1!0.76!11.36!Gli1;;chr13:72766250..72766273,+!p1@Irx2!0.76!7.71!Irx2;;chr19:25746898..25746910,+!p1@Dmrt2!0.76!7.43!Dmrt2;;chr11:96160360..96160397,+!p3@Hoxb6!0.76!4.77!Hoxb6;;chr11:96213183..96213188,+!p@chr11:96213183..96213188,+!0.76!4.70!Hoxb2;;chr2:74520075..74520087,+!p6@Hoxd11!0.76!4.70!Hoxd11;;chr14:22807107..22807119,-!p2@Zfp503!0.75!22.23!Zfp503;;chr13:31650185..31650201,+!p1@Foxq1!0.74!17.25!Foxq1;;chr11:85646469..85646488,+!p5@Tbx2!0.74!7.08!Tbx2;;chr6:97879817..97879857,+!p2@Mitf!0.74!4.56!Mitf;;chr11:96132767..96132796,+!p2@Hoxb9!0.74!4.49!Hoxb9;;chr15:97738692..97738747,-!p1@Vdr!0.73!26.86!Vdr;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!0.73!7.93!Hoxb2;;chr2:104966662..104966673,+!p4@Wt1!0.73!4.42!Wt1;;chr2:104966465..104966479,+!p6@Wt1!0.73!4.42!Wt1;;chr19:59533163..59533185,+!p3@Emx2!0.72!4.28!Emx2;;chr19:44831390..44831414,+!p1@Pax2!0.72!4.28!Pax2;;chr6:52176144..52176161,-!p2@Hoxa9!0.72!4.28!Hoxa9;;chr1:137155026..137155042,-!p1@Elf3!0.71!27.21!Elf3;;chr14:98569030..98569059,-!p3@Dach1!0.71!22.09!Dach1;;chr4:114581524..114581551,-!p1@Foxd2!0.71!6.52!Foxd2;;chr3:30408674..30408716,-!p2@Mecom!0.70!7.01!Mecom;;chr1:170361730..170361769,-!p7@Pbx1!0.69!9.61!Pbx1;;chr10:119913792..119913820,-!p5@Hmga2!0.69!7.22!Hmga2;;chr13:72766279..72766296,+!p2@Irx2!0.69!6.10!Irx2;;chr11:85646341..85646352,+!p3@Tbx2!0.68!8.00!Tbx2;;chr16:43363968..43364001,+!p7@Zbtb20!0.68!7.43!Zbtb20;;chr11:100800641..100800669,-!p3@Stat3!0.68!7.01!Stat3;;chr13:31898496..31898519,+!p3@Foxc1!0.68!6.52!Foxc1;;chr2:115890953..115890974,-!p6@Meis2!0.68!6.10!Meis2;;chr4:114581497..114581519,-!p2@Foxd2!0.68!3.79!Foxd2;;chr5:135582751..135582788,+!p1@Mlxipl!0.66!16.27!Mlxipl;;chr13:31898729..31898761,+!p1@Foxc1!0.66!9.82!Foxc1;;chr18:76219118..76219155,+!p1@Zbtb7c!0.66!6.87!Zbtb7c;;chr10:102491405..102491416,-!p1@Alx1!0.66!3.58!Alx1;;chr8:123651727..123651748,+!p1@ENSMUST00000062634!0.66!3.58!Foxl1;;chr7:77505617..77505632,-!p1@Nr2f2!0.65!188.67!Nr2f2;;chr6:88148650..88148669,+!p1@Gata2!0.65!33.88!Gata2;;chr2:24331116..24331125,-!p2@Pax8!0.65!3.51!Pax8;;chr19:59533139..59533152,+!p2@Emx2!0.65!3.44!Emx2;;chr2:9809451..9809469,-!p6@Gata3!0.65!3.44!Gata3;;chr16:14705925..14705951,+!p1@Snai2!0.64!27.49!Snai2;;chr14:98568761..98568814,-!p2@Dach1!0.64!26.79!Dach1;;chr4:154010409..154010466,-!p2@Prdm16!0.64!8.70!Prdm16;;chr7:77511403..77511450,-!p3@Nr2f2!0.64!7.86!Nr2f2;;chr11:70043257..70043263,-!p1@Bcl6b!0.64!6.31!Bcl6b;;chr6:52167513..52167549,-!p2@Hoxa7!0.64!4.98!Hoxa7;;chr19:5560600..5560617,-!p1@Ovol1!0.64!4.28!Ovol1;;chr2:115891409..115891425,-!p2@Meis2!0.63!10.94!Meis2;;chr19:28754600..28754612,-!p2@Glis3!0.63!5.68!Glis3;;chr15:102797170..102797182,+!p3@Hoxc10!0.63!3.23!Hoxc10;;chr2:74517725..74517738,+!p5@Hoxd11!0.63!3.23!Hoxd11;;chr16:4594740..4594759,+!p1@Glis2!0.62!42.85!Glis2;;chr3:94176733..94176794,+!p1@Rorc!0.62!29.18!Rorc;;chr8:94325273..94325288,-!p5@Irx3!0.62!4.14!Irx3;;chr2:74542974..74542986,+!p5@Hoxd8!0.62!3.16!Hoxd8;;chr2:9809402..9809422,-!p5@Gata3!0.62!3.16!Gata3;;chr8:118231723..118231740,-!p1@Maf!0.61!82.90!Maf;;chr8:109817400..109817417,+!p1@Nfat5!0.61!78.20!Nfat5;;chrX:110411840..110411860,+!p1@Dach2!0.61!3.93!Dach2;;chr1:189433521..189433548,+!p5@Esrrg!0.61!3.09!Esrrg;;chr11:96132637..96132652,+!p1@Hoxb9!0.61!3.09!Hoxb9;;chr2:74543235..74543246,+!p7@Hoxd8!0.60!2.95!Hoxd8;;chr4:62626594..62626651,+!p1@Zfp618!0.59!12.98!Zfp618;;chr11:101755669..101755686,-!p1@Meox1!0.59!5.82!Meox1;;chr11:100800621..100800633,-!p5@Stat3!0.59!3.51!Stat3;;chr10:12810631..12810649,+!p1@Plagl1!0.58!91.11!Plagl1;;chr11:101646566..101646603,-!p1@Etv4!0.58!10.73!Etv4;;chr10:119914001..119914078,-!p4@Hmga2!0.58!4.07!Hmga2;;chr10:30491690..30491727,-!p5@Ncoa7!0.58!2.81!Ncoa7;;chr2:74549945..74549965,+!p4@Hoxd3!0.58!2.81!Hoxd3;;chr19:59533595..59533628,+!p6@Emx2!0.58!2.81!Emx2;;chr12:12948633..12948651,-!p1@Mycn!0.57!31.98!Mycn;;chr10:119913310..119913366,-!p1@Hmga2!0.57!26.02!Hmga2;;chr2:152223441..152223465,-!p2@Sox12!0.57!13.61!Sox12;;chr10:30523091..30523182,-!p4@Ncoa7!0.57!11.15!Ncoa7;;chr17:28487603..28487626,-!p2@Tead3!0.57!6.59!Tead3;;chr2:115891381..115891392,-!p5@Meis2!0.57!6.10!Meis2;;chr7:91558631..91558652,-!p3@Arnt2!0.57!4.42!Arnt2;;chr11:96213434..96213452,+!p@chr11:96213434..96213452,+!0.57!3.86!Hoxb2;;chr4:122911086..122911112,+!p1@Heyl!0.56!38.43!Heyl;;chr7:52471143..52471186,+!p1@Tead2!0.56!35.00!Tead2;;chr1:135320962..135320981,-!p2@Sox13!0.56!10.45!Sox13;;chr2:115891427..115891441,-!p4@Meis2!0.56!6.45!Meis2;;chr19:59532915..59532940,+!p5@Emx2!0.56!2.67!Emx2;;chr6:52195747..52195762,-!p3@Hoxa11!0.56!2.67!Hoxa11;;chr11:83664334..83664353,+!p2@Hnf1b!0.56!2.67!Hnf1b;;chr2:105002682..105002691,+!p10@Wt1!0.56!2.60!Wt1;;chr2:74560109..74560131,+!p1@Hoxd4!0.56!2.60!Hoxd4;;chr15:37162796..37162828,+!p1@Grhl2!0.55!4.70!Grhl2;;chr8:94325486..94325510,-!p4@Irx3!0.55!3.58!Irx3;;chr2:180069370..180069409,-!p1@Gata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chr10:20032330..20032345,+!p3@Bclaf1!0.27!7.50!Bclaf1;;chr18:69504195..69504213,+!p4@Tcf4!0.27!7.08!Tcf4;;chr17:34730333..34730362,+!p2@Pbx2!0.27!5.96!Pbx2;;chr9:96096665..96096699,+!p4@Tfdp2!0.27!4.98!Tfdp2;;chr18:84255771..84255795,-!p3@Tshz1!0.27!4.42!Tshz1;;chr10:41996471..41996487,-!p4@Foxo3!0.27!4.14!Foxo3;;chr9:63869751..63869767,-!p1@Smad6!0.27!3.72!Smad6;;chr5:65213356..65213412,+!p6@Klf3!0.27!2.81!Klf3;;chr5:22940353..22940372,+!p3@Mll5!0.27!2.45!Mll5;;chr6:39068163..39068176,-!p2@Parp12!0.27!2.38!Parp12;;chr17:25151251..25151279,-!p4@Cramp1l!0.27!2.24!Cramp1l;;chr10:5734525..5734569,-!p3@Esr1!0.27!1.96!Esr1;;chr2:92886587..92886622,-!p3@Prdm11!0.27!1.68!Prdm11;;chr10:107769219..107769226,+!p5@Pawr!0.27!1.26!Pawr;;chr10:88996295..88996335,-!p3@Nr1h4!0.27!1.19!Nr1h4;;chr12:37835203..37835218,+!p3@Meox2!0.27!1.19!Meox2;;chr14:52935831..52935842,-!p11@Sall2!0.27!0.84!Sall2;;chr2:74535720..74535731,+!p6@Hoxd9!0.27!0.84!Hoxd9;;chr15:85602581..85602598,+!p8@Ppara!0.27!0.84!Ppara;;chr13:56804344..56804473,+!p1@Smad5!0.26!49.87!Smad5;;chr10:67741461..67741483,-!p1@Arid5b!0.26!43.98!Arid5b;;chr17:87153028..87153049,+!p2@Epas1!0.26!33.52!Epas1;;chr17:71200529..71200556,-!p1@Tgif1!0.26!25.88!Tgif1;;chr5:104183173..104183207,+!p1@Aff1!0.26!21.11!Aff1;;chr11:44430812..44430838,+!p1@Ebf1!0.26!15.57!Ebf1;;chr11:52096804..52096896,-!p1@Tcf7!0.26!12.69!Tcf7;;chr2:160698681..160698708,-!p2@Zhx3!0.26!12.55!Zhx3;;chrX:137077151..137077227,-!p2@Tsc22d3!0.26!10.80!Tsc22d3;;chr17:51952617..51952680,-!p3@Satb1!0.26!7.64!Satb1;;chr11:99092233..99092273,-!p2@Smarce1!0.26!7.22!Smarce1;;chr17:23004042..23004077,-!p2@Zfp945!0.26!5.61!Zfp945;;chr13:99954640..99954681,+!p1@Zfp366!0.26!5.33!Zfp366;;chr15:10400245..10400282,-!p2@Dnajc21!0.26!4.77!Dnajc21;;chr10:79390075..79390115,+!p2@Arid3a!0.26!4.77!Arid3a;;chr18:83080231..83080254,+!p3@Zfp516!0.26!4.77!Zfp516;;chr18:65741935..65741964,+!p2@Zfp532!0.26!3.72!Zfp532;;chr8:90483459..90483475,-!p1@Zfp423!0.26!3.72!Zfp423;;chr9:55785981..55786009,-!p2@Scaper!0.26!3.72!Scaper;;chr6:90412556..90412581,+!p3@Klf15!0.26!2.81!Klf15;;chr2:153475178..153475196,+!p1@Dnmt3b!0.26!2.74!Dnmt3b;;chr9:48644429..48644462,-!p3@Zbtb16!0.26!2.45!Zbtb16;;chr18:76400986..76401016,+!p5@Smad2!0.26!2.38!Smad2;;chr2:165818215..165818226,+!p4@Ncoa3!0.26!2.38!Ncoa3;;chr6:38204214..38204267,-!p4@D630045J12Rik!0.26!2.31!D630045J12Rik;;chr8:94325847..94325869,-!p3@Irx3!0.26!1.82!Irx3;;chr1:170361678..170361689,-!p13@Pbx1!0.26!1.19!Pbx1;;chr15:85566051..85566080,+!p4@Ppara!0.26!1.12!Ppara;;chr8:73905806..73905876,-!p1@Nr2f6!0.25!33.81!Nr2f6;;chr4:149943647..149943707,+!p2@Rere!0.25!28.55!Rere;;chr5:72950853..72950930,-!p1@Nfxl1!0.25!27.56!Nfxl1;;chr4:102787007..102787050,+!p1@Mier1!0.25!25.81!Mier1;;chr19:53403914..53403968,+!p2@Mxi1!0.25!17.46!Mxi1;;chr15:81575569..81575599,+!p2@Zc3h7b!0.25!17.32!Zc3h7b;;chr6:47827642..47827707,+!p1@Zfp282!0.25!16.41!Zfp282;;chr4:133276801..133276891,-!p3@Arid1a!0.25!16.27!Arid1a;;chr8:109620410..109620462,-!p1@Terf2!0.25!14.66!Terf2;;chr1:133904183..133904211,+!p1@Elk4!0.25!13.26!Elk4;;chr8:81552152..81552208,+!p1@Zfp827!0.25!10.94!Zfp827;;chr7:88005795..88005858,+!p1@Zscan2!0.25!10.73!Zscan2;;chr10:127176572..127176648,+!p1@Zbtb39!0.25!9.68!Zbtb39;;chr10:30522690..30522752,-!p2@Ncoa7!0.25!9.19!Ncoa7;;chr16:22439654..22439676,-!p2@Etv5!0.25!8.84!Etv5;;chr8:107694742..107694823,+!p3@Cbfb!0.25!8.84!Cbfb;;chr15:76287876..76287894,+!p1@Scx!0.25!8.14!Scx;;chr3:52072296..52072310,+!p3@Foxo1!0.25!7.43!Foxo1;;chr6:65728988..65729056,+!p1@Prdm5!0.25!7.15!Prdm5;;chr10:126725875..126725902,-!p3@Mbd6!0.25!4.98!Mbd6;;chr14:52634234..52634281,-!p3@Zfp219!0.25!3.72!Zfp219;;chr1:170362322..170362333,-!p8@Pbx1!0.25!3.44!Pbx1;;chr15:50720601..50720630,-!p2@Trps1!0.25!3.09!Trps1;;chr5:134790276..134790294,-!p7@Gtf2i!0.25!2.81!Gtf2i;;chr1:170361991..170362015,-!p6@Pbx1!0.25!2.81!Pbx1;;chr11:3189171..3189197,+!p4@Patz1!0.25!2.31!Patz1;;chr4:126700576..126700598,+!p7@Sfpq!0.25!2.17!Sfpq;;chr11:69749320..69749345,+!p2@Ybx2!0.25!1.82!Ybx2;;chr12:39507404..39507441,+!p4@Etv1!0.25!1.47!Etv1;;chr5:120121091..120121100,+!p7@Tbx3!0.25!1.05!Tbx3;;chr13:78338288..78338309,-!p7@Nr2f1!0.25!0.98!Nr2f1;;chr13:78338032..78338049,-!p8@Nr2f1!0.25!0.77!Nr2f1;;chr10:119913266..119913277,-!p6@Hmga2!0.25!0.77!Hmga2;;chr2:74536003..74536008,+!p7@Hoxd9!0.25!0.77!Hoxd9;;chr2:9811653..9811662,-!p8@Gata3!0.25!0.77!Gata3;;chr2:74529942..74529953,+!p4@Hoxd10!0.25!0.77!Hoxd10;;chr1:173144144..173144176,+!p1@Nr1i3!0.25!0.77!Nr1i3;;chr1:19199095..19199114,+!p5@Tfap2b!0.25!0.77!Tfap2b;;chr6:30908793..30908815,-!p1@Klf14!0.25!0.77!Klf14;;chr16:43364012..43364030,+!p22@Zbtb20!0.25!0.77!Zbtb20;;chr4:154597177..154597195,-!p1@Ski!0.24!59.05!Ski;;chrX:45947560..45947670,-!p1@Zfp280c!0.24!29.04!Zfp280c;;chr6:47998498..47998527,-!p1@Zfp777!0.24!25.74!Zfp777;;chr7:148513456..148513506,-!p1@Deaf1!0.24!23.92!Deaf1;;chr9:96096707..96096772,+!p1@Tfdp2!0.24!23.07!Tfdp2;;chr3:152058955..152059023,+!p1@Gm8261,p1@Zzz3!0.24!19.29!Zzz3;;chr5:138187341..138187406,+!p3@Tsc22d4!0.24!16.20!Tsc22d4;;chr18:83084030..83084056,+!p1@Zfp516!0.24!7.22!Zfp516;;chr2:92886297..92886329,-!p1@Prdm11!0.24!6.59!Prdm11;;chr17:4994697..4994730,+!p4@Arid1b!0.24!6.52!Arid1b;;chr1:120949949..120950000,-!p1@Gli2!0.24!6.10!Gli2;;chr6:97757008..97757061,+!p1@Mitf!0.24!5.96!Mitf;;chr16:42875952..42875974,+!p4@Zbtb20!0.24!5.19!Zbtb20;;chr8:81923412..81923431,-!p2@Smad1!0.24!4.98!Smad1;;chr4:108131994..108132056,+!p2@Zcchc11!0.24!4.49!Zcchc11;;chr12:34642510..34642530,+!p1@Twist1!0.24!4.28!Twist1;;chr12:34642682..34642753,+!p2@Twist1!0.24!3.44!Twist1;;chr7:97591412..97591431,+!p2@Crebzf!0.24!3.37!Crebzf;;chr10:85379814..85379844,-!p2@Prdm4!0.24!2.95!Prdm4;;chr12:72117645..72117677,+!p3@Arid4a!0.24!2.60!Arid4a;;chr5:104182963..104182982,+!p5@Aff1!0.24!2.52!Aff1;;chr17:4994491..4994531,+!p6@Arid1b!0.24!2.38!Arid1b;;chr1:181733834..181733845,-!p3@Ahctf1!0.24!1.96!Ahctf1;;chr7:88138313..88138368,+!p4@Zfp592!0.24!1.89!Zfp592;;chr15:85566184..85566238,+!p1@Ppara!0.24!1.54!Ppara;;chr7:91558472..91558512,-!p2@Arnt2!0.24!1.40!Arnt2;;chr6:72185179..72185196,-!p4@Atoh8!0.24!1.26!Atoh8;;chr2:32219200..32219213,+!p5@Ciz1!0.24!1.19!Ciz1;;chr2:44968512..44968530,-!p1@Zeb2!0.23!33.74!Zeb2;;chr16:42907676..42907797,+!p1@Zbtb20!0.23!19.29!Zbtb20;;chr16:4559608..4559681,-!p1@Tfap4!0.23!12.13!Tfap4;;chr10:114821444..114821491,-!p1@Thap2!0.23!11.50!Thap2;;chr7:26052688..26052742,+!p1@Cic!0.23!10.17!Cic;;chr13:96095150..96095184,+!p2@Zbed3!0.23!10.10!Zbed3;;chr7:13063668..13063721,+!p1@Zfp606!0.23!10.03!Zfp606;;chr4:61869460..61869521,-!p1@Zfp37!0.23!7.36!Zfp37;;chr16:4559777..4559825,-!p2@Tfap4!0.23!6.31!Tfap4;;chr2:72818978..72818997,-!p4@Sp3!0.23!5.89!Sp3;;chr2:72817659..72817725,-!p5@Sp3!0.23!5.75!Sp3;;chr12:110031310..110031342,+!p4@Yy1!0.23!5.47!Yy1;;chr11:97524415..97524455,+!p2@Mllt6!0.23!5.19!Mllt6;;chr4:148178559..148178603,+!p1@Casz1!0.23!3.65!Casz1;;chr7:30875418..30875454,-!p2@Zfp566,p2@Zfp82!0.23!3.51!Zfp566;;chr3:14578741..14578759,+!p3@E2f5!0.23!3.37!E2f5;;chr11:87881818..87881834,+!p4@Vezf1!0.23!3.09!Vezf1;;chr1:52176406..52176433,+!p2@Stat1!0.23!3.02!Stat1;;chr4:45024965..45025031,-!p3@Zbtb5!0.23!2.95!Zbtb5;;chr16:43363152..43363186,+!p3@Zbtb20!0.23!2.74!Zbtb20;;chr5:143942477..143942493,-!p2@Rbak!0.23!2.31!Rbak;;chr5:77543897..77543911,-!p2@Hopx!0.23!2.17!Hopx;;chr1:170361633..170361644,-!p11@Pbx1!0.23!1.75!Pbx1;;chr2:120996813..120996829,-!p2@Zscan29!0.23!1.75!Zscan29;;chr6:128250521..128250543,-!p3@Tead4!0.23!1.61!Tead4;;chr16:50429979..50429997,-!p4@Bbx!0.23!1.61!Bbx;;chr10:107769229..107769238,+!p3@Pawr!0.23!1.33!Pawr;;chr17:37139432..37139444,+!p4@Zfp57!0.23!1.26!Zfp57;;chr11:44431369..44431389,+!p8@Ebf1!0.23!1.19!Ebf1;;chr7:5003087..5003098,+!p6@Zfp580!0.23!0.98!Zfp580;;chr8:94881872..94881887,+!p2@Irx5!0.23!0.84!Irx5;;chr11:96143545..96143556,+!p6@Hoxb8!0.23!0.70!Hoxb8;;chr15:85565338..85565355,+!p7@Ppara!0.23!0.70!Ppara;;chr14:98568502..98568516,-!p7@Dach1!0.23!0.70!Dach1;;chr14:76815156..76815181,+!p16@Tsc22d1!0.23!0.70!Tsc22d1;;chr3:3508005..3508021,+!p3@Hnf4g!0.23!0.70!Hnf4g;;chr4:114730288..114730306,+!p8@Tal1!0.23!0.70!Tal1;;chr9:32503590..32503680,+!p1@Ets1!0.22!54.21!Ets1;;chr5:46248712..46248750,-!p1@Lcorl!0.22!22.51!Lcorl;;chr7:134758740..134758783,-!p1@Zfp629!0.22!21.04!Zfp629;;chr17:23723181..23723236,-!p1@Zfp13!0.22!13.82!Zfp13;;chr4:32325688..32325777,+!p1@Bach2!0.22!12.55!Bach2;;chr7:6107541..6107572,-!p1@Zfp787!0.22!10.66!Zfp787;;chr18:24178808..24178865,-!p2@Zfp191!0.22!7.43!Zfp191;;chr3:94819136..94819168,-!p2@Zfp687!0.22!6.80!Zfp687;;chr15:76709732..76709764,+!p1@Zfp7!0.22!6.52!Zfp7;;chr2:44968721..44968734,-!p6@Zeb2!0.22!4.84!Zeb2;;chr4:150482563..150482655,-!p2@Camta1!0.22!4.63!Camta1;;chr7:119822828..119822839,+!p4@Tead1!0.22!3.58!Tead1;;chr7:19679964..19679982,+!p1@Six5!0.22!3.44!Six5;;chr7:25292076..25292114,+!p4@Zfp428!0.22!3.37!Zfp428;;chr12:85657780..85657815,+!p2@Zfp410!0.22!3.16!Zfp410;;chr9:63605691..63605705,-!p3@Smad3!0.22!3.09!Smad3;;chr10:57206224..57206260,+!p2@Hsf2!0.22!2.74!Hsf2;;chr3:90097275..90097302,+!p2@Gatad2b!0.22!2.67!Gatad2b;;chr18:76401074..76401118,+!p3@Smad2!0.22!2.67!Smad2;;chr17:44872561..44872615,-!p1@Runx2!0.22!2.60!Runx2;;chr12:78063057..78063070,-!p3@Max!0.22!2.38!Max;;chr11:18918820..18918831,-!p4@Meis1!0.22!2.03!Meis1;;chr6:72185210..72185228,-!p3@Atoh8!0.22!1.75!Atoh8;;chr12:37835120..37835133,+!p2@Meox2!0.22!1.33!Meox2;;chr12:58646974..58647003,-!p1@Foxa1!0.22!1.19!Foxa1;;chrX:103070960..103070973,-!p7@Atrx!0.22!1.19!Atrx;;chr9:122812411..122812426,+!p@chr9:122812411..122812426,+!0.22!1.19!Gm8008;;chr1:4486505..4486527,-!p5@Sox17!0.22!1.19!Sox17;;chr14:56443781..56443800,+!p3@Nfatc4!0.22!1.12!Nfatc4;;chr7:134169357..134169366,-!p18@Maz!0.22!0.98!Maz;;chr7:52472041..52472065,+!p2@Tead2!0.22!0.91!Tead2;;chr1:170362027..170362036,-!p15@Pbx1!0.22!0.84!Pbx1;;chr2:27532912..27532923,+!p9@Rxra!0.22!0.77!Rxra;;chr5:137043112..137043157,-!p1@Cux1!0.21!135.92!Cux1;;chr8:74842952..74842970,+!p1@Klf2!0.21!99.45!Klf2;;chrX:10312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326..133914346,+!p8@Elk4!0.18!1.68!Elk4;;chr1:186556375..186556404,-!p3@Hlx!0.18!1.61!Hlx;;chr15:50721670..50721684,-!p8@Trps1!0.18!1.61!Trps1;;chr11:121380594..121380609,-!p2@Zfp750!0.18!1.54!Zfp750;;chr1:167932722..167932740,-!p2@Pou2f1!0.18!1.47!Pou2f1;;chr12:85559762..85559778,-!p5@C130039O16Rik!0.18!1.40!C130039O16Rik;;chr13:83663600..83663625,+!p6@Mef2c!0.18!1.26!Mef2c;;chr5:67698263..67698272,+!p3@Slc30a9!0.18!1.26!Slc30a9;;chr3:103772552..103772584,+!p2@Phtf1!0.18!1.26!Phtf1;;chr17:32501360..32501371,-!p5@Wiz!0.18!1.19!Wiz;;chr13:78339428..78339466,-!p2@Nr2f1!0.18!1.05!Nr2f1;;chr2:126501184..126501196,-!p6@Gabpb1!0.18!1.05!Gabpb1;;chr15:102865088..102865107,+!p1@Hoxc4!0.18!0.98!Hoxc4;;chr16:43364215..43364252,+!p14@Zbtb20!0.18!0.91!Zbtb20;;chr4:32325955..32325971,+!p3@Bach2!0.18!0.91!Bach2;;chr6:133985790..133985801,+!p8@Etv6!0.18!0.91!Etv6;;chr6:128250380..128250442,-!p2@Tead4!0.18!0.91!Tead4;;chr7:119822940..119822945,+!p6@Tead1!0.18!0.91!Tead1;;chr11:69749299..69749319,+!p5@Ybx2!0.18!0.84!Ybx2;;chr7:91558537..91558558,-!p4@Arnt2!0.18!0.84!Arnt2;;chr13:29045174..29045188,-!p7@Sox4!0.18!0.77!Sox4;;chr13:37918661..37918673,+!p17@Rreb1!0.18!0.77!Rreb1;;chr13:78339382..78339420,-!p3@Nr2f1!0.18!0.77!Nr2f1;;chr4:154010334..154010347,-!p8@Prdm16!0.18!0.77!Prdm16;;chr1:69732354..69732402,-!p1@Ikzf2!0.18!0.70!Ikzf2;;chr18:73863393..73863460,-!p1@Smad4!0.17!120.21!Smad4;;chr2:31428295..31428361,+!p1@Fubp3!0.17!35.63!Fubp3;;chr4:94645754..94645797,-!p1@LOC100047941,p1@Mysm1!0.17!34.86!Mysm1;;chr11:106993428..106993480,-!p1@Bptf!0.17!33.81!Bptf;;chr17:32501375..32501433,-!p1@Wiz!0.17!31.28!Wiz;;chr18:14131126..14131211,-!p1@Zfp521!0.17!27.84!Zfp521;;chr12:3807017..3807063,+!p1@Dnmt3a!0.17!21.74!Dnmt3a;;chr9:31193772..31193820,+!p1@Nfrkb!0.17!20.55!Nfrkb;;chr11:96838974..96839007,-!p1@Sp2!0.17!20.20!Sp2;;chr4:133310237..133310293,-!p2@Arid1a!0.17!16.48!Arid1a;;chr11:115891618..115891699,+!p1@Unk!0.17!15.78!Unk;;chr17:34053127..34053141,+!p1@Zbtb22!0.17!13.89!Zbtb22;;chr2:17986272..17986332,+!p2@Mllt10!0.17!13.40!Mllt10;;chr5:39075982..39076052,-!p1@Zfp518b!0.17!8.77!Zfp518b;;chr6:133985993..133986029,+!p2@Etv6!0.17!8.00!Etv6;;chr17:48061584..48061601,-!p2@Foxp4!0.17!7.86!Foxp4;;chrX:132420399..132420436,+!p1@Bhlhb9!0.17!7.29!Bhlhb9;;chr5:65194720..65194738,+!p2@Klf3!0.17!6.59!Klf3;;chr10:79389784..79389833,+!p1@Arid3a!0.17!6.38!Arid3a;;chr3:135354289..135354334,-!p3@Nfkb1!0.17!6.10!Nfkb1;;chr1:133904131..133904168,+!p4@Elk4!0.17!5.05!Elk4;;chr6:133986088..133986122,+!p4@Etv6!0.17!4.98!Etv6;;chr15:102034446..102034506,+!p2@Zfp740!0.17!3.86!Zfp740;;chr13:15555496..15555544,+!p1@Gli3!0.17!3.86!Gli3;;chr10:126726021..126726053,-!p4@Mbd6!0.17!3.86!Mbd6;;chr11:87881803..87881817,+!p3@Vezf1!0.17!3.58!Vezf1;;chrX:48558950..48559016,-!p1@Mbnl3!0.17!3.51!Mbnl3;;chr18:11052456..11052477,+!p3@Gata6!0.17!3.37!Gata6;;chr3:95021799..95021840,-!p4@Gabpb2!0.17!3.30!Gabpb2;;chr17:71202822..71202877,-!p3@Tgif1!0.17!3.09!Tgif1;;chr5:107125807..107125835,-!p3@Zfp644!0.17!2.95!Zfp644;;chr10:114821393..114821431,-!p5@Thap2!0.17!2.88!Thap2;;chr18:55150248..55150308,-!p6@Zfp608!0.17!2.38!Zfp608;;chr17:27693818..27693830,+!p7@Hmga1-rs1,p8@Hmga1!0.17!2.17!Hmga1;;chr9:96653241..96653288,-!p1@E030011O05Rik,p5@Zbtb38!0.17!1.68!Zbtb38;;chr2:35960919..35960954,-!p1@Lhx6!0.17!1.68!Lhx6;;chr10:67599375..67599386,-!p3@Arid5b!0.17!1.61!Arid5b;;chr5:138187583..138187602,+!p6@Tsc22d4!0.17!1.61!Tsc22d4;;chr11:44430989..44431015,+!p4@Ebf1!0.17!1.54!Ebf1;;chr11:44431710..44431725,+!p7@Ebf1!0.17!1.33!Ebf1;;chr11:98789140..98789168,+!p5@Rara!0.17!1.33!Rara;;chr5:9161608..9161619,-!p3@Dmtf1!0.17!1.33!Dmtf1;;chr4:54960713..54960727,+!p7@Zfp462!0.17!1.33!Zfp462;;
+|ffid_belonging_in_development=UBERON:0003104,UBERON:0003918,UBERON:0007687,FF:0000294
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |has_quality=
 |id=FF:646-21G7
-|is_a=EFO:0002091;;FF:0000004;;FF:0000103;;FF:0011396
+|is_a=EFO:0002091;;FF:0011396
+|is_obsolete=
+|library_id=CNhs11214
+|library_id_phase_based=2:CNhs11214
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;646
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;646
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/kidney%252c%2520neonate%2520N00.CNhs11214.646-21G7.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/kidney%252c%2520neonate%2520N00.CNhs11214.646-21G7.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/kidney%252c%2520neonate%2520N00.CNhs11214.646-21G7.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/kidney%252c%2520neonate%2520N00.CNhs11214.646-21G7.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/kidney%252c%2520neonate%2520N00.CNhs11214.646-21G7.mm9.nobarcode.rdna.fa.gz
 |name=kidney, neonate N00
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11214,LSID748,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=0.468054985641694,0.0294389011296462,0.014011593970994,0,0.0570083229196787,0,0.357206257880142,0.025530981480069,0.0799955403639101,0,0,0.146456517913239,0,0,0,0,0,0,0.247975246976501,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140351017188268,0,0.326780808986559,0,0.212513170969648,0.0294389011296462,0.0742228519215435,0.0673515507370595,-0.0434633841312475,-0.0545609096828338,0.056912170976208,0,0,0.193426984489104,0,0,0,0,0,0,0,0.107394261255838,0,0.246179702795661,0.0294389011296462,0,0,0,0.0400846364722009,0,0.056185246342361,0.107394261255838,0.193426984489104,0.0527329213577243,0.0698239622734119,0.0700518549807846,-0.128652141641436,0.198899146915991,0,0.103746844531008,0.0643272203585754,0.101922944554325,0.0829315915550757,0,0.0795687256941666,-0.0689766422032422,-0.347575190404629,0.114595389649196,0,0,0,0,0.096713492244552,0.354577983865091,-0.15592371954814,-0.135999653918117,-0.174640075825942,0.0231372116255401,0.0829315915550757,0,0,0.0294389011296462
 |rna_box=21
 |rna_catalog_number=
@@ Line 57: / Line 76: @@
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 76: / Line 96: @@
 |sample_tissue=kidney
 |top_motifs=FOXQ1:1.91917003017;RXR{A,B,G}:1.81238406002;HNF1A:1.62419187702;TOPORS:1.50636001218;NFIX:1.49953665741;BPTF:1.2876981249;PAX6:1.24318620918;IKZF2:1.21795252612;ESRRA:1.18637506361;ADNP_IRX_SIX_ZHX:1.16223772777;ONECUT1,2:1.15905928105;XCPE1{core}:1.14507853174;FOXO1,3,4:1.13485347357;FOXN1:1.10201378849;ZNF384:1.02085015234;FOXD3:0.993017251136;SREBF1,2:0.985237049288;FOX{I1,J2}:0.965195177271;SOX5:0.928009603114;TFAP2{A,C}:0.916277455043;GFI1B:0.87407542973;MAZ:0.854797718332;NKX3-1:0.792884164249;TFCP2:0.77675072778;HNF4A_NR2F1,2:0.766546197533;PAX5:0.764812062517;TEAD1:0.75360016379;FOX{D1,D2}:0.746650265488;NKX2-1,4:0.735521086341;ESR1:0.73538450062;TFDP1:0.729775012537;NANOG{mouse}:0.729502441728;ZBTB16:0.719754991571;FOXP1:0.711863060634;SP1:0.708936146546;TFAP2B:0.686381158915;T:0.679644611017;GZF1:0.665054599129;MYBL2:0.615429244678;TEF:0.612616341575;MED-1{core}:0.609944550427;PITX1..3:0.604012369486;GFI1:0.58807604101;PATZ1:0.586181521198;VSX1,2:0.555154558421;IKZF1:0.513243399539;GTF2I:0.465755714788;SNAI1..3:0.459568183346;HIC1:0.416946636272;GATA4:0.415357385398;PRRX1,2:0.408341444052;SOX2:0.403064090599;DBP:0.392202733964;BREu{core}:0.390620890832;HMGA1,2:0.3587721211;RREB1:0.358686133659;PBX1:0.352827106443;EBF1:0.325567891006;KLF4:0.323008031552;MZF1:0.30048058047;HBP1_HMGB_SSRP1_UBTF:0.283375058473;NFATC1..3:0.224080392101;ZIC1..3:0.211089357861;EGR1..3:0.199813915347;TP53:0.191498310098;IRF7:0.188403786835;MTE{core}:0.180944194101;CUX2:0.153951778131;TLX1..3_NFIC{dimer}:0.139661342126;NKX2-3_NKX2-5:0.137718578764;PAX4:0.130746068106;AR:0.109131081847;LEF1_TCF7_TCF7L1,2:0.104260188174;CDX1,2,4:0.10333836744;NR3C1:0.100840980792;E2F1..5:0.0948228033037;ZNF238:0.0849832229131;RXRA_VDR{dimer}:0.0766434072167;TFAP4:0.0707296017924;PDX1:0.0698806168847;FOXA2:0.0487795987376;NR1H4:0.0334344398184;ELF1,2,4:0.0316927180327;GTF2A1,2:0.0124132352336;ZFP161:0.010520241046;ZEB1:0.00559063865599;NFY{A,B,C}:-0.00767862110115;NKX6-1,2:-0.0203903850447;NFIL3:-0.0208213607166;CRX:-0.0229469323967;ATF2:-0.043182850373;SRF:-0.045155775909;ZBTB6:-0.0500609703418;PAX1,9:-0.0635382414609;PRDM1:-0.0689895168505;POU6F1:-0.0741381290955;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0806787806219;NR6A1:-0.0979500253703;MTF1:-0.0990151490346;SOX17:-0.106224948642;IRF1,2:-0.110514001244;SOX{8,9,10}:-0.115003710651;GCM1,2:-0.122282991809;FOSL2:-0.133052816318;EP300:-0.134665749448;ZNF423:-0.134936944931;EVI1:-0.142162393262;NR5A1,2:-0.144266642033;HIF1A:-0.156067799318;RBPJ:-0.171765121581;AHR_ARNT_ARNT2:-0.186435371665;RFX1:-0.221922360972;PAX8:-0.226379581078;SPZ1:-0.230960863183;TBX4,5:-0.232742342555;ELK1,4_GABP{A,B1}:-0.233577698935;DMAP1_NCOR{1,2}_SMARC:-0.234053102047;MYOD1:-0.245857660386;UFEwm:-0.249282915635;ATF4:-0.249753746274;POU2F1..3:-0.252272271742;SPIB:-0.253366800458;ETS1,2:-0.265959478854;MAFB:-0.312759571142;TBP:-0.31461111433;POU1F1:-0.350135089912;POU5F1:-0.366120971767;NFKB1_REL_RELA:-0.374524101913;EN1,2:-0.380582328514;REST:-0.386618304041;ZNF143:-0.402721644446;NRF1:-0.403254374056;MYB:-0.405062542037;SPI1:-0.419283651267;PAX2:-0.433660732493;ALX4:-0.471707083434;NFE2:-0.486365098456;ATF6:-0.488398772118;PPARG:-0.495456510443;HAND1,2:-0.499406668485;MYFfamily:-0.51092137409;CDC5L:-0.525902260389;CEBPA,B_DDIT3:-0.530082384995;MEF2{A,B,C,D}:-0.531040247653;AIRE:-0.553351417007;FOXM1:-0.5571141934;bHLH_family:-0.567685155685;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.57035403055;NANOG:-0.59156719659;BACH2:-0.592658044797;OCT4_SOX2{dimer}:-0.593474438369;LMO2:-0.600078258621;STAT2,4,6:-0.601205646757;CREB1:-0.607893477321;YY1:-0.616376508589;NHLH1,2:-0.619470939177;GATA6:-0.62143216118;STAT5{A,B}:-0.627189060082;HSF1,2:-0.634546656519;STAT1,3:-0.64891765003;RUNX1..3:-0.658232276835;HMX1:-0.698120890167;TAL1_TCF{3,4,12}:-0.705650787147;FOS_FOS{B,L1}_JUN{B,D}:-0.709730438244;FOXL1:-0.72979555021;RFX2..5_RFXANK_RFXAP:-0.760634986217;TGIF1:-0.76804400983;ATF5_CREB3:-0.796708614876;POU3F1..4:-0.819622458133;JUN:-0.837444955054;NFE2L2:-0.89416278;FOX{F1,F2,J1}:-0.968000645051;FOXP3:-0.974235863505;GLI1..3:-0.989349450237;NKX3-2:-0.98999900352;RORA:-1.00898144454;LHX3,4:-1.02539776083;HOXA9_MEIS1:-1.11295132686;SMAD1..7,9:-1.1834094635;ALX1:-1.19192441791;TLX2:-1.2158897057;HLF:-1.22570197306;ZNF148:-1.24236424106;HES1:-1.2817713491;HOX{A5,B5}:-1.31300323012;ARID5B:-1.36407305437;NFE2L1:-1.49732345753;NKX2-2,8:-1.72337174283;HOX{A4,D4}:-1.87576205297
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:646-21G7;search_select_hide=table117:646-21G7
 }}

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FF:646-21G7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:19, 4 June 2020

CNhs11214

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0