FFCP PHASE1:Hg19::chr19:46000553..46000584,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:46000553..46000584,-
|short_description=p3@RTN2
|description=CAGE_peak_3_at_RTN2_5end
|association_with_transcript=-240bp_to_ENST00000344680,NM_206900,uc0...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6253 | |EntrezGene=6253 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10468 | |HGNC=10468 | ||
|TSSclassifier=strong | |||
|UniProt=O75298,Q7RTM9,Q96CG9 | |UniProt=O75298,Q7RTM9,Q96CG9 | ||
|association_with_transcript=-240bp_to_ENST00000344680,NM_206900,uc002pcb.2,uc002pcc.2,uc002pcd.2_5end | |||
|cluster_id=chr19:46000553..46000584,- | |||
|description=CAGE_peak_3_at_RTN2_5end | |||
|id=chr19:46000553..46000584,- | |||
|ontology_enrichment_celltype=CL:0000066!2.42e-13!254;CL:0000223!2.58e-08!59;CL:0002076!4.46e-07!43;CL:0000082!6.31e-07!19 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!5.96e-41!239;DOID:162!6.14e-41!235;DOID:0050687!5.79e-38!143;DOID:305!3.26e-29!106;DOID:0050686!3.42e-20!137;DOID:299!6.02e-12!25;DOID:0050615!3.25e-08!16;DOID:3119!4.65e-08!14;DOID:1749!5.63e-08!14;DOID:1324!2.35e-07!15 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.08e-10;14!DOID:3119;4.16e-10;14!DOID:299;6.29e-09;25!DOID:0050687;1.59e-07;143 | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.22e-19,235;DOID:14566,1.80e-18,239;DOID:0050687,2.07e-17,143;DOID:305,2.61e-11,106;DOID:1749,1.82e-10,14;DOID:3119,4.51e-10,14;DOID:0050686,4.53e-10,137;DOID:299,4.09e-09,25 | |||
|ontology_enrichment_uberon=UBERON:0004802!6.31e-07!19;UBERON:0000115!6.31e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0003343;1.06e-07;4!UBERON:0004785;1.06e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,9.39e-08,4;UBERON:0004785,9.39e-08,4 | |||
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| ||
|short_description=p3@RTN2 | |||
}} | }} |
Latest revision as of 18:18, 18 September 2015
Short description: | p3@RTN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RTN2_5end |
Coexpression cluster: | NA |
Association with transcript: | -240bp_to_ENST00000344680, NM_206900, uc002pcb.2, uc002pcc.2, uc002pcd.2_5end |
EntrezGene: | RTN2 |
HGNC: | 10468 |
UniProt: | O75298Q7RTM9Q96CG9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 9.39e-08 | 4 |
respiratory system mucosa | 9.39e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.22e-19 | 235 |
disease of cellular proliferation | 1.80e-18 | 239 |
cell type cancer | 2.07e-17 | 143 |
carcinoma | 2.61e-11 | 106 |
squamous cell carcinoma | 1.82e-10 | 14 |
gastrointestinal system cancer | 4.51e-10 | 14 |
organ system cancer | 4.53e-10 | 137 |
adenocarcinoma | 4.09e-09 | 25 |