FFCP PHASE1:Hg19::chr7:80548333..80548354,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10512 | |EntrezGene=10512 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10725 | |HGNC=10725 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=143bp_to_ENST00000487621_5end | |association_with_transcript=143bp_to_ENST00000487621_5end | ||
|cluster_id=chr7:80548333..80548354,- | |||
|coexpression_cluster_id=C958 | |coexpression_cluster_id=C958 | ||
|description=CAGE_peak_2_at_SEMA3C_5end | |description=CAGE_peak_2_at_SEMA3C_5end | ||
|id=chr7:80548333..80548354,- | |id=chr7:80548333..80548354,- | ||
|ontology_enrichment_celltype=CL:0000055!7.48e-18!180;CL:0000057!1.91e-09!75;CL:0002076!8.77e-08!43;CL:0000680!2.02e-07!57;CL:0000056!2.02e-07!57;CL:0000355!2.02e-07!57;CL:0000220!2.71e-07!246;CL:0000499!4.47e-07!27;CL:0002321!6.43e-07!248 | |ontology_enrichment_celltype=CL:0000055!7.48e-18!180;CL:0000057!1.91e-09!75;CL:0002076!8.77e-08!43;CL:0000680!2.02e-07!57;CL:0000056!2.02e-07!57;CL:0000355!2.02e-07!57;CL:0000220!2.71e-07!246;CL:0000499!4.47e-07!27;CL:0002321!6.43e-07!248 | ||
|ontology_enrichment_celltype_v019=CL:0000499;1.45e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.54e-09,76;CL:0002076,5.04e-08,42;CL:0000499,1.48e-07,28;CL:0000680,1.75e-07,58;CL:0000056,1.75e-07,58;CL:0000355,1.75e-07,58;CL:0002321,9.05e-07,250 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.58e-07!14 | |ontology_enrichment_disease=DOID:2394!1.58e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;2.19e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.12e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000475!1.98e-15!365;UBERON:0000468!4.96e-12!659;UBERON:0000481!1.33e-11!347;UBERON:0000486!2.32e-11!82;UBERON:0002100!2.33e-11!216;UBERON:0003104!1.28e-10!238;UBERON:0009142!1.28e-10!238;UBERON:0003102!1.18e-09!95;UBERON:0000467!7.66e-09!625;UBERON:0000914!9.26e-09!83;UBERON:0002329!9.26e-09!83;UBERON:0003077!9.26e-09!83;UBERON:0003059!9.26e-09!83;UBERON:0007282!9.26e-09!83;UBERON:0009618!9.26e-09!83;UBERON:0007285!9.26e-09!83;UBERON:0000480!1.30e-08!626;UBERON:0002385!3.16e-08!63;UBERON:0001015!3.16e-08!63;UBERON:0000383!3.16e-08!63;UBERON:0001134!5.57e-08!61;UBERON:0002036!5.57e-08!61;UBERON:0003082!5.57e-08!61;UBERON:0004290!6.56e-08!70;UBERON:0004923!1.35e-07!57;UBERON:0000062!1.43e-07!511;UBERON:0004119!2.02e-07!169;UBERON:0000925!2.02e-07!169;UBERON:0006595!2.02e-07!169;UBERON:0005256!5.90e-07!143;UBERON:0004458!9.14e-07!49 | |ontology_enrichment_uberon=UBERON:0000475!1.98e-15!365;UBERON:0000468!4.96e-12!659;UBERON:0000481!1.33e-11!347;UBERON:0000486!2.32e-11!82;UBERON:0002100!2.33e-11!216;UBERON:0003104!1.28e-10!238;UBERON:0009142!1.28e-10!238;UBERON:0003102!1.18e-09!95;UBERON:0000467!7.66e-09!625;UBERON:0000914!9.26e-09!83;UBERON:0002329!9.26e-09!83;UBERON:0003077!9.26e-09!83;UBERON:0003059!9.26e-09!83;UBERON:0007282!9.26e-09!83;UBERON:0009618!9.26e-09!83;UBERON:0007285!9.26e-09!83;UBERON:0000480!1.30e-08!626;UBERON:0002385!3.16e-08!63;UBERON:0001015!3.16e-08!63;UBERON:0000383!3.16e-08!63;UBERON:0001134!5.57e-08!61;UBERON:0002036!5.57e-08!61;UBERON:0003082!5.57e-08!61;UBERON:0004290!6.56e-08!70;UBERON:0004923!1.35e-07!57;UBERON:0000062!1.43e-07!511;UBERON:0004119!2.02e-07!169;UBERON:0000925!2.02e-07!169;UBERON:0006595!2.02e-07!169;UBERON:0005256!5.90e-07!143;UBERON:0004458!9.14e-07!49 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,1.53e-11,83;UBERON:0003102,5.18e-11,99;UBERON:0002100,3.66e-10,199;UBERON:0002385,2.59e-08,64;UBERON:0001015,2.59e-08,64;UBERON:0000383,2.59e-08,64;UBERON:0004923,3.17e-08,66;UBERON:0001134,4.65e-08,62;UBERON:0002036,4.65e-08,62;UBERON:0003082,4.65e-08,62;UBERON:0002329,5.29e-08,71;UBERON:0003059,5.29e-08,71;UBERON:0007282,5.29e-08,71;UBERON:0004290,5.29e-08,71;UBERON:0009618,5.29e-08,71;UBERON:0007524,9.86e-08,73;UBERON:0003077,1.35e-07,72;UBERON:0007285,1.35e-07,72;UBERON:0004119,3.16e-07,160;UBERON:0000925,3.16e-07,160;UBERON:0006595,3.16e-07,160 | |||
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| ||
|short_description=p2@SEMA3C | |short_description=p2@SEMA3C | ||
}} | }} |
Latest revision as of 17:24, 19 September 2015
Short description: | p2@SEMA3C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SEMA3C_5end |
Coexpression cluster: | C958_Synoviocyte_Urothelial_Fibroblast_Ewing_Mallassezderived_Chondrocyte_epithelioid |
Association with transcript: | 143bp_to_ENST00000487621_5end |
EntrezGene: | SEMA3C |
HGNC: | 10725 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.54e-09 | 76 |
endo-epithelial cell | 5.04e-08 | 42 |
stromal cell | 1.48e-07 | 28 |
muscle precursor cell | 1.75e-07 | 58 |
myoblast | 1.75e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.75e-07 | 58 |
embryonic cell | 9.05e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 1.53e-11 | 83 |
surface structure | 5.18e-11 | 99 |
trunk | 3.66e-10 | 199 |
muscle tissue | 2.59e-08 | 64 |
musculature | 2.59e-08 | 64 |
musculature of body | 2.59e-08 | 64 |
organ component layer | 3.17e-08 | 66 |
skeletal muscle tissue | 4.65e-08 | 62 |
striated muscle tissue | 4.65e-08 | 62 |
myotome | 4.65e-08 | 62 |
somite | 5.29e-08 | 71 |
presomitic mesoderm | 5.29e-08 | 71 |
presumptive segmental plate | 5.29e-08 | 71 |
dermomyotome | 5.29e-08 | 71 |
trunk paraxial mesoderm | 5.29e-08 | 71 |
dense mesenchyme tissue | 9.86e-08 | 73 |
paraxial mesoderm | 1.35e-07 | 72 |
presumptive paraxial mesoderm | 1.35e-07 | 72 |
endoderm-derived structure | 3.16e-07 | 160 |
endoderm | 3.16e-07 | 160 |
presumptive endoderm | 3.16e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.12e-07 | 14 |