FFCP PHASE1:Hg19::chr19:41725256..41725320,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:41725256..41725320,+
|short_description=p3@AXL
|description=CAGE_peak_3_at_AXL_5end
|association_with_transcript=148bp_to_ENST00000301178,ENST00000359092,...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=558 | |EntrezGene=558 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=905 | |HGNC=905 | ||
|TSSclassifier=strong | |||
|UniProt=P30530 | |UniProt=P30530 | ||
|association_with_transcript=148bp_to_ENST00000301178,ENST00000359092,NM_001699,NM_021913,uc010ehi.1,uc010ehj.2,uc010ehk.2_5end | |||
|cluster_id=chr19:41725256..41725320,+ | |||
|coexpression_cluster_id=C3794 | |||
|description=CAGE_peak_3_at_AXL_5end | |||
|id=chr19:41725256..41725320,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.80e-26!180;CL:0000057!5.69e-19!75;CL:0000220!7.56e-13!246;CL:0002321!1.60e-12!248;CL:0000222!2.35e-11!119;CL:0002620!2.56e-10!23;CL:0000680!1.19e-07!57;CL:0000056!1.19e-07!57;CL:0000355!1.19e-07!57;CL:0000183!2.12e-07!59;CL:0000077!3.48e-07!19;CL:0000192!4.60e-07!42;CL:0000514!4.60e-07!42;CL:0000066!8.77e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.41e-10;23!CL:0000057;1.26e-08;73!CL:0000077;2.96e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.63e-20,76;CL:0002321,7.44e-11,250;CL:0002620,1.47e-10,23;CL:0000222,3.56e-10,121;CL:0000680,6.31e-08,58;CL:0000056,6.31e-08,58;CL:0000355,6.31e-08,58;CL:0000077,2.44e-07,19;CL:0000192,2.55e-07,43;CL:0000514,2.55e-07,43;CL:0000187,9.43e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.80e-25!365;UBERON:0000481!1.02e-22!347;UBERON:0000119!7.13e-17!312;UBERON:0000483!3.27e-16!309;UBERON:0000477!1.01e-15!286;UBERON:0005256!5.22e-15!143;UBERON:0000468!1.48e-14!659;UBERON:0000914!1.43e-13!83;UBERON:0002329!1.43e-13!83;UBERON:0003077!1.43e-13!83;UBERON:0003059!1.43e-13!83;UBERON:0007282!1.43e-13!83;UBERON:0009618!1.43e-13!83;UBERON:0007285!1.43e-13!83;UBERON:0000467!3.63e-13!625;UBERON:0000480!6.58e-13!626;UBERON:0003102!6.93e-13!95;UBERON:0000064!2.98e-12!219;UBERON:0000033!3.99e-12!123;UBERON:0003104!5.19e-12!238;UBERON:0009142!5.19e-12!238;UBERON:0002100!7.61e-11!216;UBERON:0000153!9.07e-11!129;UBERON:0007811!9.07e-11!129;UBERON:0000486!2.99e-10!82;UBERON:0000923!3.28e-10!604;UBERON:0005291!3.28e-10!604;UBERON:0006598!3.28e-10!604;UBERON:0002532!3.28e-10!604;UBERON:0002050!3.72e-10!605;UBERON:0005423!3.72e-10!605;UBERON:0004111!3.83e-10!241;UBERON:0001444!1.16e-09!48;UBERON:0000922!1.24e-09!612;UBERON:0000062!1.77e-09!511;UBERON:0004290!2.55e-09!70;UBERON:0004121!4.49e-09!169;UBERON:0000924!2.60e-08!173;UBERON:0006601!2.60e-08!173;UBERON:0002097!1.04e-07!40;UBERON:0001637!1.18e-07!42;UBERON:0003509!1.18e-07!42;UBERON:0004572!1.18e-07!42;UBERON:0000025!1.38e-07!194;UBERON:0002049!3.12e-07!79;UBERON:0007798!3.12e-07!79;UBERON:0002385!7.99e-07!63;UBERON:0001015!7.99e-07!63;UBERON:0000383!7.99e-07!63;UBERON:0001134!8.41e-07!61;UBERON:0002036!8.41e-07!61;UBERON:0003082!8.41e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0000075;6.64e-08;16!UBERON:0001444;6.97e-07;48 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,1.80e-16,309;UBERON:0000483,8.28e-16,306;UBERON:0003102,1.45e-13,99;UBERON:0003104,2.27e-11,160;UBERON:0009142,2.27e-11,160;UBERON:0000486,1.88e-10,83;UBERON:0007503,2.19e-10,78;UBERON:0010314,2.25e-10,132;UBERON:0007524,3.29e-10,73;UBERON:0003077,7.78e-10,72;UBERON:0007285,7.78e-10,72;UBERON:0002329,1.09e-09,71;UBERON:0003059,1.09e-09,71;UBERON:0007282,1.09e-09,71;UBERON:0004290,1.09e-09,71;UBERON:0009618,1.09e-09,71;UBERON:0005256,1.23e-09,122;UBERON:0000033,3.17e-09,56;UBERON:0001444,3.34e-09,49;UBERON:0004111,3.80e-09,240;UBERON:0002097,2.25e-08,41;UBERON:0000075,6.14e-08,16;UBERON:0004121,6.40e-08,171;UBERON:0000924,6.40e-08,171;UBERON:0006601,6.40e-08,171;UBERON:0001637,7.15e-08,42;UBERON:0003509,7.15e-08,42;UBERON:0004572,7.15e-08,42;UBERON:0002100,1.02e-07,199;UBERON:0000490,1.13e-07,148;UBERON:0005423,1.31e-07,581;UBERON:0000153,3.53e-07,62;UBERON:0007811,3.53e-07,62;UBERON:0002385,4.08e-07,64;UBERON:0001015,4.08e-07,64;UBERON:0000383,4.08e-07,64;UBERON:0001134,4.29e-07,62;UBERON:0002036,4.29e-07,62;UBERON:0003082,4.29e-07,62;UBERON:0000025,4.37e-07,192;UBERON:0002050,5.57e-07,564;UBERON:0000922,5.60e-07,592;UBERON:0002199,6.44e-07,46;UBERON:0002416,6.44e-07,46;UBERON:0005085,7.66e-07,31;UBERON:0011137,9.74e-07,14 | |||
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| ||
|short_description=p3@AXL | |||
}} | }} |
Latest revision as of 03:51, 18 September 2015
Short description: | p3@AXL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_AXL_5end |
Coexpression cluster: | C3794_lens_mesothelioma_bone_myxofibrosarcoma_large_Renal_Fibroblast |
Association with transcript: | 148bp_to_ENST00000301178, ENST00000359092, NM_001699, NM_021913, uc010ehi.1, uc010ehj.2, uc010ehk.2_5end |
EntrezGene: | AXL |
HGNC: | 905 |
UniProt: | P30530 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.63e-20 | 76 |
embryonic cell | 7.44e-11 | 250 |
skin fibroblast | 1.47e-10 | 23 |
mesodermal cell | 3.56e-10 | 121 |
muscle precursor cell | 6.31e-08 | 58 |
myoblast | 6.31e-08 | 58 |
multi-potent skeletal muscle stem cell | 6.31e-08 | 58 |
mesothelial cell | 2.44e-07 | 19 |
smooth muscle cell | 2.55e-07 | 43 |
smooth muscle myoblast | 2.55e-07 | 43 |
muscle cell | 9.43e-07 | 55 |