FFCP PHASE1:Hg19::chr19:41082755..41082801,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:41082755..41082801,+
|short_description=p1@SHKBP1
|description=CAGE_peak_1_at_SHKBP1_5end
|association_with_transcript=0bp_to_ENST00000291842,ENST00000446...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=92799 | |EntrezGene=92799 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19214 | |HGNC=19214 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TBC3,B4DUW2 | |UniProt=Q8TBC3,B4DUW2 | ||
|association_with_transcript=0bp_to_ENST00000291842,ENST00000446701,NM_138392,uc002oob.2,uc002ooc.2,uc002ood.2_5end | |||
|cluster_id=chr19:41082755..41082801,+ | |||
|coexpression_cluster_id=C3790 | |||
|description=CAGE_peak_1_at_SHKBP1_5end | |||
|id=chr19:41082755..41082801,+ | |||
|ontology_enrichment_celltype=CL:0002371!4.74e-37!591;CL:0000988!2.98e-36!182;CL:0000037!5.05e-35!172;CL:0000566!5.05e-35!172;CL:0000738!2.47e-34!140;CL:0000144!6.28e-34!625;CL:0002032!7.29e-34!165;CL:0000837!7.29e-34!165;CL:0002087!1.38e-31!119;CL:0000003!1.74e-31!722;CL:0002031!9.23e-27!124;CL:0000766!1.35e-25!76;CL:0002057!4.91e-25!42;CL:0000763!4.70e-24!112;CL:0000049!4.70e-24!112;CL:0000012!4.81e-24!682;CL:0000548!7.68e-24!679;CL:0000004!7.68e-24!679;CL:0000255!7.68e-24!679;CL:0000860!3.66e-23!45;CL:0002194!3.41e-22!63;CL:0000576!3.41e-22!63;CL:0000040!3.41e-22!63;CL:0000559!3.41e-22!63;CL:0000048!1.84e-21!430;CL:0000723!4.77e-21!436;CL:0002009!1.10e-20!65;CL:0000557!1.34e-20!71;CL:0000034!1.51e-20!444;CL:0002320!1.17e-19!365;CL:0000839!1.18e-19!70;CL:0000134!2.36e-18!358;CL:0000063!6.58e-18!578;CL:0000219!2.05e-16!390;CL:0000542!4.86e-09!53;CL:0000051!4.86e-09!53;CL:0000838!8.89e-09!52;CL:1000449!1.35e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.20e-18;33!CL:0002057;2.20e-18;33!CL:0000473;3.92e-17;39!CL:0000234;3.92e-17;39!CL:0000576;1.57e-15;48!CL:0000766;8.19e-13;69!CL:0002087;5.09e-10;104!CL:0000763;1.20e-09;100!CL:0000738;2.01e-08;136!CL:1000449;6.65e-08;15!CL:0000988;6.98e-07;177!CL:0002681;9.36e-07;12!CL:0002584;9.36e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,1.79e-36,177;CL:0000037,1.05e-35,168;CL:0000738,3.41e-35,136;CL:0002032,1.48e-34,161;CL:0000837,1.48e-34,161;CL:0002087,1.52e-32,115;CL:0002031,1.56e-27,120;CL:0000766,7.06e-27,72;CL:0000473,9.53e-27,48;CL:0000234,9.53e-27,48;CL:0000860,4.91e-25,42;CL:0002057,4.91e-25,42;CL:0000763,7.81e-25,108;CL:0000049,7.81e-25,108;CL:0002194,1.50e-23,59;CL:0000576,1.50e-23,59;CL:0000040,1.50e-23,59;CL:0000559,1.50e-23,59;CL:0002009,6.64e-22,61;CL:0000557,1.06e-21,67;CL:0000048,2.57e-21,427;CL:0000723,6.67e-21,433;CL:0000839,1.01e-20,66;CL:0000034,2.13e-20,441;CL:0002320,1.52e-19,361;CL:0000134,3.01e-18,354;CL:0000219,2.71e-16,386;CL:0000542,4.86e-09,53;CL:0000051,4.86e-09,53;CL:0000838,8.89e-09,52;CL:1000449,6.28e-08,15;CL:0000115,5.20e-07,36;CL:0002681,9.14e-07,12;CL:0002584,9.14e-07,12 | |||
|ontology_enrichment_development_v019=CL:0002057;3.43e-18;42!CL:0000049;3.54e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.41e-28!112;UBERON:0003081!6.85e-28!216;UBERON:0002390!3.34e-27!102;UBERON:0003061!3.34e-27!102;UBERON:0002371!1.61e-21!80;UBERON:0002384!5.09e-19!375;UBERON:0001474!6.68e-18!86;UBERON:0002405!8.80e-18!115;UBERON:0004765!1.53e-14!101;UBERON:0001434!1.53e-14!101;UBERON:0002204!1.31e-13!167;UBERON:0004211!1.35e-07!16;UBERON:0001285!1.35e-07!16;UBERON:0007684!1.35e-07!16;UBERON:0003220!1.35e-07!16;UBERON:0004208!1.35e-07!16;UBERON:0000353!4.69e-07!17;UBERON:0006555!8.34e-07!17;UBERON:0005103!8.34e-07!17;UBERON:0000083!8.34e-07!17;UBERON:0009201!8.34e-07!17;UBERON:0004819!8.34e-07!17;UBERON:0006553!8.34e-07!17;UBERON:0003074!8.34e-07!17;UBERON:0003060!8.34e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;6.65e-08;15!UBERON:0004819;6.65e-08;15!UBERON:0001285;6.65e-08;15!UBERON:0007684;6.65e-08;15!UBERON:0000353;2.01e-07;15!UBERON:0001225;9.36e-07;12!UBERON:0008987;9.36e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.89e-29,108;UBERON:0002390,3.48e-28,98;UBERON:0003061,3.48e-28,98;UBERON:0003081,3.67e-25,203;UBERON:0002405,4.17e-24,93;UBERON:0002371,1.57e-22,76;UBERON:0002384,6.68e-19,371;UBERON:0001474,1.13e-18,82;UBERON:0004765,2.33e-17,90;UBERON:0001434,2.78e-15,100;UBERON:0002204,4.00e-14,167;UBERON:0000926,9.21e-14,315;UBERON:0004120,9.21e-14,315;UBERON:0006603,9.21e-14,315;UBERON:0004211,6.28e-08,15;UBERON:0009773,6.28e-08,15;UBERON:0001231,6.28e-08,15;UBERON:0001285,6.28e-08,15;UBERON:0007684,6.28e-08,15;UBERON:0004208,6.28e-08,15;UBERON:0000353,1.88e-07,15;UBERON:0006555,4.51e-07,16;UBERON:0004819,4.51e-07,16;UBERON:0001225,9.14e-07,12;UBERON:0008987,9.14e-07,12 | |||
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| ||
|short_description=p1@SHKBP1 | |||
}} | }} |
Latest revision as of 02:18, 18 September 2015
Short description: | p1@SHKBP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SHKBP1_5end |
Coexpression cluster: | C3790_Neutrophils_Eosinophils_Mesenchymal_Whole_Alveolar_blood_CD14 |
Association with transcript: | 0bp_to_ENST00000291842, ENST00000446701, NM_138392, uc002oob.2, uc002ooc.2, uc002ood.2_5end |
EntrezGene: | SHKBP1 |
HGNC: | 19214 |
UniProt: | Q8TBC3B4DUW2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 2.89e-29 | 108 |
hematopoietic system | 3.48e-28 | 98 |
blood island | 3.48e-28 | 98 |
lateral plate mesoderm | 3.67e-25 | 203 |
immune system | 4.17e-24 | 93 |
bone marrow | 1.57e-22 | 76 |
connective tissue | 6.68e-19 | 371 |
bone element | 1.13e-18 | 82 |
skeletal element | 2.33e-17 | 90 |
skeletal system | 2.78e-15 | 100 |
musculoskeletal system | 4.00e-14 | 167 |
mesoderm | 9.21e-14 | 315 |
mesoderm-derived structure | 9.21e-14 | 315 |
presumptive mesoderm | 9.21e-14 | 315 |
nephron epithelium | 6.28e-08 | 15 |
renal tubule | 6.28e-08 | 15 |
nephron tubule | 6.28e-08 | 15 |
nephron | 6.28e-08 | 15 |
uriniferous tubule | 6.28e-08 | 15 |
nephrogenic mesenchyme | 6.28e-08 | 15 |
parenchyma | 1.88e-07 | 15 |
excretory tube | 4.51e-07 | 16 |
kidney epithelium | 4.51e-07 | 16 |
cortex of kidney | 9.14e-07 | 12 |
renal parenchyma | 9.14e-07 | 12 |