FFCP PHASE1:Hg19::chr5:115910646..115910657,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57556 | |EntrezGene=57556 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10738 | |HGNC=10738 | ||
|TSSclassifier=strong | |||
|UniProt=Q9H2E6 | |UniProt=Q9H2E6 | ||
|association_with_transcript=-16bp_to_ENST00000343348_5end | |association_with_transcript=-16bp_to_ENST00000343348_5end | ||
|cluster_id=chr5:115910646..115910657,- | |||
|coexpression_cluster_id=C49 | |coexpression_cluster_id=C49 | ||
|description=CAGE_peak_6_at_SEMA6A_5end | |description=CAGE_peak_6_at_SEMA6A_5end | ||
|id=chr5:115910646..115910657,- | |id=chr5:115910646..115910657,- | ||
|ontology_enrichment_celltype=CL:0000148!1.07e-13!10;CL:0000541!1.07e-13!10;CL:0000147!2.33e-10!14;CL:0002322!3.04e-08!5 | |ontology_enrichment_celltype=CL:0000148!1.07e-13!10;CL:0000541!1.07e-13!10;CL:0000147!2.33e-10!14;CL:0002322!3.04e-08!5 | ||
|ontology_enrichment_celltype_v019=CL:0000148;1.76e-34;10!CL:0000147;3.69e-24;14!CL:0002322;1.24e-23;5!CL:0000710;2.06e-16;20!CL:0002567;1.66e-13;3!CL:0000075;9.92e-12;27!CL:0000039;1.71e-10;7!CL:0000586;1.71e-10;7!CL:0002077;1.75e-08;34!CL:0002321;1.21e-07;15!CL:0000540;1.92e-07;6!CL:0000404;1.92e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,1.32e-34,10;CL:0000541,1.32e-34,10;CL:0000147,3.01e-24,14;CL:0002322,1.24e-23,5;CL:0000710,1.79e-16,20;CL:0002567,1.08e-13,3;CL:0000075,8.98e-12,27;CL:0000039,1.77e-10,7;CL:0000586,1.77e-10,7;CL:0000133,1.50e-09,59;CL:0000047,2.60e-09,8;CL:0002077,5.16e-09,34;CL:0000540,1.92e-07,6;CL:0000031,1.92e-07,6;CL:0000404,1.92e-07,6;CL:0000221,2.15e-07,72;CL:0000333,8.50e-07,41 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.11e-11;10!UBERON:0005564;3.11e-11;10!CL:0000031;1.92e-07;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3095;5.54e-09;22!DOID:2994;5.54e-09;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,6.30e-09,22;DOID:2994,6.30e-09,22 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.70e-28!115;UBERON:0001049!7.24e-18!57;UBERON:0005068!7.24e-18!57;UBERON:0006241!7.24e-18!57;UBERON:0007135!7.24e-18!57;UBERON:0001017!2.93e-17!82;UBERON:0005743!9.80e-17!86;UBERON:0000073!3.01e-15!94;UBERON:0001016!3.01e-15!94;UBERON:0003075!4.94e-15!86;UBERON:0007284!4.94e-15!86;UBERON:0002780!6.42e-15!41;UBERON:0001890!6.42e-15!41;UBERON:0006240!6.42e-15!41;UBERON:0002346!1.20e-14!90;UBERON:0003080!2.32e-14!42;UBERON:0002020!6.57e-14!34;UBERON:0003528!6.57e-14!34;UBERON:0001893!1.94e-13!34;UBERON:0002616!1.97e-13!59;UBERON:0002791!6.40e-13!33;UBERON:0001869!5.01e-12!32;UBERON:0000955!2.33e-11!69;UBERON:0006238!2.33e-11!69;UBERON:0003056!1.95e-10!61;UBERON:0004121!2.48e-09!169;UBERON:0000924!2.81e-09!173;UBERON:0006601!2.81e-09!173;UBERON:0000956!5.22e-09!25;UBERON:0000203!5.22e-09!25;UBERON:0002619!4.65e-08!22;UBERON:0001950!5.68e-08!20;UBERON:0000153!1.71e-07!129;UBERON:0007811!1.71e-07!129;UBERON:0000033!6.12e-07!123 | |ontology_enrichment_uberon=UBERON:0007023!4.70e-28!115;UBERON:0001049!7.24e-18!57;UBERON:0005068!7.24e-18!57;UBERON:0006241!7.24e-18!57;UBERON:0007135!7.24e-18!57;UBERON:0001017!2.93e-17!82;UBERON:0005743!9.80e-17!86;UBERON:0000073!3.01e-15!94;UBERON:0001016!3.01e-15!94;UBERON:0003075!4.94e-15!86;UBERON:0007284!4.94e-15!86;UBERON:0002780!6.42e-15!41;UBERON:0001890!6.42e-15!41;UBERON:0006240!6.42e-15!41;UBERON:0002346!1.20e-14!90;UBERON:0003080!2.32e-14!42;UBERON:0002020!6.57e-14!34;UBERON:0003528!6.57e-14!34;UBERON:0001893!1.94e-13!34;UBERON:0002616!1.97e-13!59;UBERON:0002791!6.40e-13!33;UBERON:0001869!5.01e-12!32;UBERON:0000955!2.33e-11!69;UBERON:0006238!2.33e-11!69;UBERON:0003056!1.95e-10!61;UBERON:0004121!2.48e-09!169;UBERON:0000924!2.81e-09!173;UBERON:0006601!2.81e-09!173;UBERON:0000956!5.22e-09!25;UBERON:0000203!5.22e-09!25;UBERON:0002619!4.65e-08!22;UBERON:0001950!5.68e-08!20;UBERON:0000153!1.71e-07!129;UBERON:0007811!1.71e-07!129;UBERON:0000033!6.12e-07!123 | ||
|ontology_enrichment_uberon_v019=UBERON:0000922;2.41e-09;49 | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p6@SEMA6A | |short_description=p6@SEMA6A | ||
}} | }} |
Latest revision as of 20:51, 19 September 2015
Short description: | p6@SEMA6A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SEMA6A_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | -16bp_to_ENST00000343348_5end |
EntrezGene: | SEMA6A |
HGNC: | 10738 |
UniProt: | Q9H2E6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.32e-34 | 10 |
melanoblast | 1.32e-34 | 10 |
pigment cell | 3.01e-24 | 14 |
embryonic stem cell | 1.24e-23 | 5 |
neurecto-epithelial cell | 1.79e-16 | 20 |
light melanocyte | 1.08e-13 | 3 |
columnar/cuboidal epithelial cell | 8.98e-12 | 27 |
germ line cell | 1.77e-10 | 7 |
germ cell | 1.77e-10 | 7 |
neurectodermal cell | 1.50e-09 | 59 |
neuronal stem cell | 2.60e-09 | 8 |
ecto-epithelial cell | 5.16e-09 | 34 |
neuron | 1.92e-07 | 6 |
neuroblast | 1.92e-07 | 6 |
electrically signaling cell | 1.92e-07 | 6 |
ectodermal cell | 2.15e-07 | 72 |
migratory neural crest cell | 8.50e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 6.30e-09 | 22 |
germ cell cancer | 6.30e-09 | 22 |