FFCP PHASE1:Hg19::chr4:1723197..1723261,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10460 | |EntrezGene=10460 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11524 | |HGNC=11524 | ||
|TSSclassifier=strong | |||
|UniProt=F8WC55,C9JWI7,Q9Y6A5 | |UniProt=F8WC55,C9JWI7,Q9Y6A5 | ||
|association_with_transcript=0bp_to_ENST00000467746,ENST00000484651,ENST00000485989,NM_006342_5end | |association_with_transcript=0bp_to_ENST00000467746,ENST00000484651,ENST00000485989,NM_006342_5end | ||
|cluster_id=chr4:1723197..1723261,+ | |||
|coexpression_cluster_id=C281 | |coexpression_cluster_id=C281 | ||
|description=CAGE_peak_1_at_TACC3_5end | |description=CAGE_peak_1_at_TACC3_5end | ||
|id=chr4:1723197..1723261,+ | |id=chr4:1723197..1723261,+ | ||
|ontology_enrichment_celltype=CL:0000012!8.49e-22!682;CL:0000548!2.25e-21!679;CL:0000004!2.25e-21!679;CL:0000255!2.25e-21!679;CL:0000066!1.04e-14!254;CL:0000003!5.54e-14!722;CL:0000144!1.55e-11!625;CL:0002321!1.84e-11!248;CL:0000220!6.55e-11!246;CL:0000055!4.83e-09!180;CL:0000063!7.14e-09!578;CL:0000333!6.68e-08!41;CL:0000133!7.16e-08!59;CL:0002319!9.73e-08!25;CL:0002371!1.75e-07!591;CL:0000221!5.41e-07!71 | |ontology_enrichment_celltype=CL:0000012!8.49e-22!682;CL:0000548!2.25e-21!679;CL:0000004!2.25e-21!679;CL:0000255!2.25e-21!679;CL:0000066!1.04e-14!254;CL:0000003!5.54e-14!722;CL:0000144!1.55e-11!625;CL:0002321!1.84e-11!248;CL:0000220!6.55e-11!246;CL:0000055!4.83e-09!180;CL:0000063!7.14e-09!578;CL:0000333!6.68e-08!41;CL:0000133!7.16e-08!59;CL:0002319!9.73e-08!25;CL:0002371!1.75e-07!591;CL:0000221!5.41e-07!71 | ||
|ontology_enrichment_celltype_v019=CL:0002319;8.54e-08;25!CL:1000449;8.69e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.28e-15,253;CL:0002321,1.01e-11,250;CL:0000133,5.22e-08,59;CL:0000333,5.39e-08,41;CL:0002319,9.12e-08,25;CL:1000449,8.77e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!8.53e-31!235;DOID:14566!6.23e-30!239;DOID:2531!2.94e-19!51;DOID:0060083!2.94e-19!51;DOID:0050686!4.69e-18!137;DOID:1240!1.35e-15!39;DOID:0050687!3.77e-12!143;DOID:8692!1.42e-11!31;DOID:305!2.92e-09!106 | |ontology_enrichment_disease=DOID:162!8.53e-31!235;DOID:14566!6.23e-30!239;DOID:2531!2.94e-19!51;DOID:0060083!2.94e-19!51;DOID:0050686!4.69e-18!137;DOID:1240!1.35e-15!39;DOID:0050687!3.77e-12!143;DOID:8692!1.42e-11!31;DOID:305!2.92e-09!106 | ||
|ontology_enrichment_disease_v019=DOID:1240;3.64e-12;39!DOID:2531;6.05e-12;51!DOID:0060083;6.05e-12;51!DOID:8692;3.36e-11;31 | |||
|ontology_enrichment_disease_v019_2=DOID:162,8.90e-31,235;DOID:14566,6.51e-30,239;DOID:2531,2.44e-19,51;DOID:0060083,2.44e-19,51;DOID:0050686,5.44e-18,137;DOID:1240,1.16e-15,39;DOID:0050687,4.07e-12,143;DOID:8692,1.27e-11,31;DOID:305,2.69e-09,106 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;8.69e-07;15!UBERON:0004819;8.69e-07;15!UBERON:0001285;8.69e-07;15!UBERON:0007684;8.69e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,8.77e-07,15;UBERON:0009773,8.77e-07,15;UBERON:0001231,8.77e-07,15;UBERON:0001285,8.77e-07,15;UBERON:0007684,8.77e-07,15;UBERON:0004208,8.77e-07,15 | |||
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| ||
|short_description=p1@TACC3 | |short_description=p1@TACC3 | ||
}} | }} |
Latest revision as of 18:34, 16 September 2015
Short description: | p1@TACC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TACC3_5end |
Coexpression cluster: | C281_Hodgkin_Reticulocytes_chronic_NK_acute_retinoblastoma_small |
Association with transcript: | 0bp_to_ENST00000467746, ENST00000484651, ENST00000485989, NM_006342_5end |
EntrezGene: | TACC3 |
HGNC: | 11524 |
UniProt: | F8WC55C9JWI7Q9Y6A5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.28e-15 | 253 |
embryonic cell | 1.01e-11 | 250 |
neurectodermal cell | 5.22e-08 | 59 |
migratory neural crest cell | 5.39e-08 | 41 |
neural cell | 9.12e-08 | 25 |
epithelial cell of nephron | 8.77e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 8.77e-07 | 15 |
renal tubule | 8.77e-07 | 15 |
nephron tubule | 8.77e-07 | 15 |
nephron | 8.77e-07 | 15 |
uriniferous tubule | 8.77e-07 | 15 |
nephrogenic mesenchyme | 8.77e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cancer | 8.90e-31 | 235 |
disease of cellular proliferation | 6.51e-30 | 239 |
hematologic cancer | 2.44e-19 | 51 |
immune system cancer | 2.44e-19 | 51 |
organ system cancer | 5.44e-18 | 137 |
leukemia | 1.16e-15 | 39 |
cell type cancer | 4.07e-12 | 143 |
myeloid leukemia | 1.27e-11 | 31 |
carcinoma | 2.69e-09 | 106 |