FFCP PHASE1:Hg19::chr4:111536708..111536738,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-94bp_to_ENST00000513690_5end | |association_with_transcript=-94bp_to_ENST00000513690_5end | ||
|cluster_id=chr4:111536708..111536738,- | |||
|coexpression_cluster_id=C4360 | |coexpression_cluster_id=C4360 | ||
|description=CAGE_peak_1_at_ENST00000513690_5end | |description=CAGE_peak_1_at_ENST00000513690_5end | ||
|id=chr4:111536708..111536738,- | |id=chr4:111536708..111536738,- | ||
|ontology_enrichment_celltype=CL:0002322!1.29e-12!5;CL:0002621!5.96e-08!3;CL:0002569!8.78e-08!6;CL:1000507!8.82e-07!12;CL:1000494!8.82e-07!12 | |ontology_enrichment_celltype=CL:0002322!1.29e-12!5;CL:0002621!5.96e-08!3;CL:0002569!8.78e-08!6;CL:1000507!8.82e-07!12;CL:1000494!8.82e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0002569;2.38e-13;6!CL:0002367;5.75e-11;2!CL:0002363;2.72e-10;2!CL:0002588;2.72e-10;2!CL:0002322;7.02e-09;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002569,1.90e-13,6;CL:0002367,6.35e-11,2;CL:0002588,2.25e-10,2;CL:0002363,2.86e-10,2;CL:0000008,2.86e-10,2;CL:0002322,7.12e-09,5 | |||
|ontology_enrichment_development_v019=CL:0000008;2.72e-10;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000020!8.50e-10!23;UBERON:0001032!2.68e-09!24;UBERON:0004456!2.68e-09!24;UBERON:0003103!1.82e-08!69;UBERON:0001949!5.96e-08!3;UBERON:0003422!8.78e-08!6;UBERON:0000481!2.00e-07!347;UBERON:0000970!2.67e-07!20;UBERON:0002331!6.16e-07!10;UBERON:0000358!6.16e-07!10;UBERON:0000307!6.16e-07!10;UBERON:0000091!6.16e-07!10;UBERON:0000087!6.16e-07!10;UBERON:0007806!6.16e-07!10;UBERON:0008780!6.16e-07!10;UBERON:0005728!6.16e-07!10;UBERON:0002104!6.97e-07!21;UBERON:0009773!8.82e-07!12;UBERON:0001231!8.82e-07!12;UBERON:0004810!8.82e-07!12;UBERON:0000007!9.52e-07!2 | |ontology_enrichment_uberon=UBERON:0000020!8.50e-10!23;UBERON:0001032!2.68e-09!24;UBERON:0004456!2.68e-09!24;UBERON:0003103!1.82e-08!69;UBERON:0001949!5.96e-08!3;UBERON:0003422!8.78e-08!6;UBERON:0000481!2.00e-07!347;UBERON:0000970!2.67e-07!20;UBERON:0002331!6.16e-07!10;UBERON:0000358!6.16e-07!10;UBERON:0000307!6.16e-07!10;UBERON:0000091!6.16e-07!10;UBERON:0000087!6.16e-07!10;UBERON:0007806!6.16e-07!10;UBERON:0008780!6.16e-07!10;UBERON:0005728!6.16e-07!10;UBERON:0002104!6.97e-07!21;UBERON:0009773!8.82e-07!12;UBERON:0001231!8.82e-07!12;UBERON:0004810!8.82e-07!12;UBERON:0000007!9.52e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0003422;2.38e-13;6!UBERON:0000020;1.81e-12;23!UBERON:0002331;2.79e-12;10!UBERON:0001032;6.75e-12;24!UBERON:0004456;6.75e-12;24!UBERON:0003104;1.86e-11;7!UBERON:0009142;1.86e-11;7!UBERON:0000007;4.96e-11;2!UBERON:0003891;5.58e-11;4!UBERON:0005969;5.75e-11;2!UBERON:0003956;5.75e-11;2!UBERON:0003566;2.72e-10;2!UBERON:0001777;2.72e-10;2!UBERON:0000970;2.51e-08;20!UBERON:0002104;6.70e-08;21!UBERON:0001723;1.81e-07;3!UBERON:0001033;1.81e-07;3!UBERON:0000478;8.75e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003422,1.90e-13,6;UBERON:0002331,2.34e-12,10;UBERON:0000358,2.34e-12,10;UBERON:0000307,2.34e-12,10;UBERON:0000091,2.34e-12,10;UBERON:0000087,2.34e-12,10;UBERON:0007010,2.34e-12,10;UBERON:0007806,2.34e-12,10;UBERON:0008780,2.34e-12,10;UBERON:0005728,2.34e-12,10;UBERON:0000020,6.81e-12,24;UBERON:0001032,6.81e-12,24;UBERON:0004456,6.81e-12,24;UBERON:0000007,4.96e-11,2;UBERON:0005969,6.35e-11,2;UBERON:0003956,6.35e-11,2;UBERON:0003891,7.01e-11,4;UBERON:0003566,2.86e-10,2;UBERON:0001777,2.86e-10,2;UBERON:0000970,6.92e-08,21;UBERON:0002104,6.92e-08,21;UBERON:0001723,1.69e-07,3;UBERON:0001033,1.69e-07,3;UBERON:0010056,1.69e-07,3;UBERON:0000478,7.68e-07,24 | |||
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| ||
|short_description=p1@ENST00000513690 | |short_description=p1@ENST00000513690 | ||
}} | }} |
Latest revision as of 00:55, 30 July 2015
Short description: | p1@ENST00000513690 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000513690_5end |
Coexpression cluster: | C4360_left_retina_heart_umbilical_Mesenchymal_eye_teratocarcinoma |
Association with transcript: | -94bp_to_ENST00000513690_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of umbilical cord | 1.90e-13 | 6 |
trabecular meshwork cell | 6.35e-11 | 2 |
smooth muscle cell of the umbilical vein | 2.25e-10 | 2 |
keratocyte | 2.86e-10 | 2 |
migratory cranial neural crest cell | 2.86e-10 | 2 |
embryonic stem cell | 7.12e-09 | 5 |
Ontology term | p-value | n |
---|---|---|
mesenchyme of umbilical cord | 1.90e-13 | 6 |
umbilical cord | 2.34e-12 | 10 |
blastocyst | 2.34e-12 | 10 |
blastula | 2.34e-12 | 10 |
bilaminar disc | 2.34e-12 | 10 |
inner cell mass | 2.34e-12 | 10 |
cleaving embryo | 2.34e-12 | 10 |
connecting stalk | 2.34e-12 | 10 |
inner cell mass derived epiblast | 2.34e-12 | 10 |
extraembryonic mesoderm | 2.34e-12 | 10 |
sense organ | 6.81e-12 | 24 |
sensory system | 6.81e-12 | 24 |
entire sense organ system | 6.81e-12 | 24 |
pituitary gland | 4.96e-11 | 2 |
reticulum trabeculare | 6.35e-11 | 2 |
aqueous drainage system | 6.35e-11 | 2 |
stroma | 7.01e-11 | 4 |
head connective tissue | 2.86e-10 | 2 |
substantia propria of cornea | 2.86e-10 | 2 |
eye | 6.92e-08 | 21 |
visual system | 6.92e-08 | 21 |
tongue | 1.69e-07 | 3 |
gustatory system | 1.69e-07 | 3 |
future tongue | 1.69e-07 | 3 |
extraembryonic structure | 7.68e-07 | 24 |