FFCP PHASE1:Hg19::chr4:103266043..103266060,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64116 | |EntrezGene=64116 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20862 | |HGNC=20862 | ||
|TSSclassifier=strong | |||
|UniProt=Q9C0K1 | |UniProt=Q9C0K1 | ||
|association_with_transcript=235bp_to_ENST00000394833_5end | |association_with_transcript=235bp_to_ENST00000394833_5end | ||
|cluster_id=chr4:103266043..103266060,- | |||
|coexpression_cluster_id=C137 | |coexpression_cluster_id=C137 | ||
|description=CAGE_peak_12_at_SLC39A8_5end | |description=CAGE_peak_12_at_SLC39A8_5end | ||
|id=chr4:103266043..103266060,- | |id=chr4:103266043..103266060,- | ||
|ontology_enrichment_celltype=CL:0000037!5.12e-11!172;CL:0000566!5.12e-11!172;CL:0002032!5.76e-11!165;CL:0000837!5.76e-11!165;CL:0000988!9.40e-11!182;CL:0000763!1.64e-08!112;CL:0000049!1.64e-08!112 | |ontology_enrichment_celltype=CL:0000037!5.12e-11!172;CL:0000566!5.12e-11!172;CL:0002032!5.76e-11!165;CL:0000837!5.76e-11!165;CL:0000988!9.40e-11!182;CL:0000763!1.64e-08!112;CL:0000049!1.64e-08!112 | ||
|ontology_enrichment_celltype_v019=CL:0000764;9.73e-14;2!CL:0000558;9.73e-14;2!CL:0002032;1.42e-07;1!CL:0000557;1.42e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000764,9.14e-14,2;CL:0000765,9.14e-14,2;CL:0000050,9.14e-14,2;CL:0000038,9.14e-14,2;CL:0000558,9.14e-14,2;CL:0000547,9.14e-14,2;CL:0000549,9.14e-14,2;CL:0000550,9.14e-14,2;CL:0000552,9.14e-14,2;CL:0000763,9.26e-13,108;CL:0000049,9.26e-13,108;CL:0002032,1.65e-08,161;CL:0000837,1.65e-08,161;CL:0000037,5.23e-08,168;CL:0000988,2.02e-07,177 | |||
|ontology_enrichment_development_v019=UBERON:0010227;1.89e-07;1!UBERON:0005425;3.40e-07;1 | |||
|ontology_enrichment_disease=DOID:1240!4.14e-09!39;DOID:1036!1.18e-08!8;DOID:2531!2.28e-08!51;DOID:0060083!2.28e-08!51;DOID:8692!4.10e-08!31 | |ontology_enrichment_disease=DOID:1240!4.14e-09!39;DOID:1036!1.18e-08!8;DOID:2531!2.28e-08!51;DOID:0060083!2.28e-08!51;DOID:8692!4.10e-08!31 | ||
|ontology_enrichment_disease_v019=DOID:1036;3.55e-36;8!DOID:8692;2.76e-17;31!DOID:1240;7.36e-13;39!DOID:2531;1.85e-08;51!DOID:0060083;1.85e-08;51!DOID:8552;7.50e-08;1!DOID:3347;1.89e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,5.15e-36,8;DOID:8692,4.84e-18,31;DOID:1240,7.24e-17,39;DOID:2531,2.02e-12,51;DOID:0060083,2.02e-12,51;DOID:8552,7.50e-08,1;DOID:3347,2.07e-07,1 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0002079;1.89e-07;1!UBERON:0001282;1.89e-07;1!UBERON:0009842;1.89e-07;1!UBERON:0003704;1.89e-07;1!UBERON:0001171;1.89e-07;1!UBERON:0001172;1.89e-07;1!UBERON:0000941;3.40e-07;1!UBERON:0002171;3.40e-07;1!UBERON:0001785;3.40e-07;1!UBERON:0002464;3.40e-07;1!UBERON:0004904;3.40e-07;1!UBERON:0001021;3.40e-07;1!UBERON:0006518;3.40e-07;1!UBERON:0008949;3.40e-07;1!UBERON:0000101;3.40e-07;1!UBERON:0002167;3.40e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001282,1.83e-07,1;UBERON:0009842,1.83e-07,1;UBERON:0003704,1.83e-07,1;UBERON:0001171,1.83e-07,1;UBERON:0001172,1.83e-07,1;UBERON:0002079,1.95e-07,1;UBERON:0002171,2.83e-07,1;UBERON:0006518,2.83e-07,1;UBERON:0008949,2.83e-07,1;UBERON:0000101,2.83e-07,1;UBERON:0002167,2.83e-07,1;UBERON:0000941,3.20e-07,1;UBERON:0001785,3.20e-07,1;UBERON:0002464,3.20e-07,1;UBERON:0004904,3.20e-07,1;UBERON:0001021,3.20e-07,1;UBERON:0003902,3.20e-07,1;UBERON:0005425,3.20e-07,1 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0.136874425072884,0,0.0764134057479513,0.0821005894499457,0.157421562627358,0.393364276848904,0,0,0,0,0,0,0.284338464974843,0.880801318004542,0,0,0,0.223915474239924,0.32389366601898,0,0.145398238779565,0.377875943688809,0,0.697287110717054,0.411167888021826,0.619412741790207,0,0.256160706529101,0.47296445977717,0.689491361473237,0,0,0,0,0.224723484445085,1.22433556948361,0.320929027076094,0,0,0,0,0.870627715885752,0.56738522469114,3.73693349397345,0,0,0,0.605399502633369,0.736555271975129,0.949387162322653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,6.60856642895129,5.04457706683382,4.21414535640123,0.196709770113833,0,0.411202997999018,0,0,0,0,0.334231370655521,0,0.221533894583621,0,0.512365278902701,0.260118695119756,0,0,1.15921234294021,0,0,0,0.226618685395132,0,0,0.253019692019503,0.318565414324097,0,0,0.150575119077773,0.255973222308837,0,0.236777252044017,0,0.201606743224732,0.802320587350522,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.0654895377488563,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0.25326102332916,0,0,0.354668382198357,0,0,0,0.311211035399766,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0.122834317311768,0,2.37600571456411,0.247266929278557,0,0,0.168336113954066,0,0,0,0,0.150238058906597,0.113432183160021,0,0.213557388818567,0,0,0,0,0.18611685633159,0,0,0,0,0.161646056818812,0,0,0,0,0,0.573609190778008,0.121973706129595,0.132529768321485,0.232387885739037,0.207322110030741,0.756962552626885,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0,0,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0.594524649154913,0,0,0.141775097242386,0,0,0,4.92663237895944,2.0251139823042,0.414656231081544,0.576479813667846,0.6312121671319,0.063497894292169,0,0,0,0,0,0,0.112131084345361,0.43596006883328,0.1466765716419,0.258543431515556,0,0,0.26593811658487,1.04007436911366,0,0,0,0.142977993658148,0,0,0,0,0,1.80863626235752,0,1.19967589418468,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.385029108839245,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0.106727557803444,0,0,0,0,0,0.280660094433074,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.92001666944023,4.44440266742331,0.256450125116389,0,0,0.103041011647722,0.183138929636687,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0,0.165284915360978,0.192190067365106,0,0,0,0,0,0.308033580176089,0.532306030317022,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0.48763373908959,0.243713489631284,0,0.136499911407986,0.282810863907425,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0.35667105148125,0,0.844430541190656,0,0,0,0.0962221127255121,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0.79312517629427,0,0,0,0,0.28853842595289,0.142283686696828,0.956557636372934,0.399158742865633,0,0.635020748171649,0,0.280797178113459,0,0,0,0.169291777801603,0.1605880751037,0.201799707191048,0,0,0,0.223676107892416,0,0.19538809540204,0.278406173895242,3.69262196843137,1.6227340708559,0.33307196799782,9.86909035614947,0,0.293016358543788,0,0,0,0,0,0,0,0.140669416410513,0.445234820091624,0.16480387422676,0,0.19924798825107,0.276283915531148,0,0,0.123084805461069,0,0.0898683511473268,0.179021174675609,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0.724999575434793,0.1137934482855,0,0.236387681767936,0,0,0.173624994933292,0,0.120596438625408,0,0.221158519862449,0,0,0.10893846351899,0.139423744278603,0.0769502585037971,2.16489906109302,0,0.179515288819544,0,0.638002319463839,0.0915975934018623,0,1.02193298195737,1.09886179476517,17.7846499633167,0.451191321234361,1.17637520590644,1.67821586975843,2.65655225813859,22.5689942152138,0.210998064528027,0,0,0,0.995261931078505,0.265372693510018,0,0.296521128680622,0.86494757262552,0.522109747527277,0.134802265961354,0,0,0,0,0,0,0,0,0.31593289814244,0.150323419414493,0.311064574191741,0,0,0,0,0,0,0.173559738335131,0,0.0870592065804026,0.34945333648406,0,0.580537987734511,0.65780385377567,0.821154570532092,0.0969890164884194,0,0,0.137041924646751,0,0,0,0.160317640503067,0.213452994739353,0,0.144090417154106,0,0,0,0,0,0,0,0,0.288950589901519,0,0,3.83239764200917,0,0.262887354279314,0,0.229160424011684,0,0,0,0.223171457441873,0.0671834724867263,0,0,0,0,0,0,0.508039992394707,0,0.272406812223151,0.803765742325096,0.137539436597234,0,0.449947783103001,0,0.121499113316049,0.335434687599266,0,0.157363764404994,0.105600336519406,116.178195887683,0,2.1440859791201,0,0,0.542999601753713,0,0,0,4.02253351671761,0,0,0.732761168390412,0,0,0,0,0,1.70859860108311,0.157204305099666,1.65695622138878,0,0,0.243585196761792,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0.18628920882415,0,0,0.151649117541648,0.285465333544967,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0.147855149989634,0.318593534327405,0.899606224327209,0,0,0,0,0.150257608997218,0.761610424337591,0,0,0.1074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| ||
|short_description=p12@SLC39A8 | |short_description=p12@SLC39A8 | ||
}} | }} |
Latest revision as of 03:37, 20 September 2015
Short description: | p12@SLC39A8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_SLC39A8_5end |
Coexpression cluster: | C137_large_ductal_melanoma_cervical_Endothelial_Smooth_chronic |
Association with transcript: | 235bp_to_ENST00000394833_5end |
EntrezGene: | SLC39A8 |
HGNC: | 20862 |
UniProt: | Q9C0K1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
erythroid lineage cell | 9.14e-14 | 2 |
erythroblast | 9.14e-14 | 2 |
megakaryocyte-erythroid progenitor cell | 9.14e-14 | 2 |
erythroid progenitor cell | 9.14e-14 | 2 |
reticulocyte | 9.14e-14 | 2 |
proerythroblast | 9.14e-14 | 2 |
basophilic erythroblast | 9.14e-14 | 2 |
polychromatophilic erythroblast | 9.14e-14 | 2 |
orthochromatic erythroblast | 9.14e-14 | 2 |
myeloid cell | 9.26e-13 | 108 |
common myeloid progenitor | 9.26e-13 | 108 |
hematopoietic oligopotent progenitor cell | 1.65e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.65e-08 | 161 |
hematopoietic stem cell | 5.23e-08 | 168 |
hematopoietic cell | 2.02e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
intralobular bile duct | 1.83e-07 | 1 |
acinus | 1.83e-07 | 1 |
intrahepatic bile duct | 1.83e-07 | 1 |
portal lobule | 1.83e-07 | 1 |
hepatic acinus | 1.83e-07 | 1 |
left cardiac atrium | 1.95e-07 | 1 |
lower lobe of right lung | 2.83e-07 | 1 |
right lung lobe | 2.83e-07 | 1 |
lower lobe of lung | 2.83e-07 | 1 |
lobe of lung | 2.83e-07 | 1 |
right lung | 2.83e-07 | 1 |
cranial nerve II | 3.20e-07 | 1 |
cranial nerve | 3.20e-07 | 1 |
nerve trunk | 3.20e-07 | 1 |
nerve connecting eye with brain | 3.20e-07 | 1 |
nerve | 3.20e-07 | 1 |
retinal neural layer | 3.20e-07 | 1 |
presumptive neural retina | 3.20e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 5.15e-36 | 8 |
myeloid leukemia | 4.84e-18 | 31 |
leukemia | 7.24e-17 | 39 |
hematologic cancer | 2.02e-12 | 51 |
immune system cancer | 2.02e-12 | 51 |
chronic myeloid leukemia | 7.50e-08 | 1 |
osteosarcoma | 2.07e-07 | 1 |