FFCP PHASE1:Hg19::chr2:235591306..235591328,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:235591306..235591328,+ | |||
|coexpression_cluster_id=C839 | |coexpression_cluster_id=C839 | ||
|description=CAGE_peak_at_chr2:235591306..235591328,+ | |description=CAGE_peak_at_chr2:235591306..235591328,+ | ||
|id=chr2:235591306..235591328,+ | |id=chr2:235591306..235591328,+ | ||
|ontology_enrichment_celltype=CL:0002586!1.75e-09!3;CL:0000055!5.70e-09!180;CL:0000149!3.58e-07!4;CL:0000181!6.19e-07!12;CL:0000417!6.19e-07!12;CL:0000668!6.19e-07!12;CL:0000414!6.19e-07!12;CL:0000412!6.19e-07!12;CL:0000182!6.19e-07!12 | |ontology_enrichment_celltype=CL:0002586!1.75e-09!3;CL:0000055!5.70e-09!180;CL:0000149!3.58e-07!4;CL:0000181!6.19e-07!12;CL:0000417!6.19e-07!12;CL:0000668!6.19e-07!12;CL:0000414!6.19e-07!12;CL:0000412!6.19e-07!12;CL:0000182!6.19e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0002586;2.17e-98;3!CL:0000149;4.26e-74;4!CL:0000147;6.67e-22;14!CL:0002592;2.89e-12;3!CL:0000569;1.32e-09;4!CL:0002494;3.01e-09;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,2.17e-98,3;CL:0000149,4.26e-74,4;CL:0000147,6.67e-22,14;CL:0002592,2.89e-12,3;CL:0000569,1.32e-09,4;CL:0000011,1.32e-09,4;CL:0002494,3.01e-09,16 | |||
|ontology_enrichment_development_v019=CL:0000011;1.32e-09;4 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001781!1.75e-09!3;UBERON:0001782!1.75e-09!3;UBERON:0005424!1.75e-09!3;UBERON:0007625!1.81e-08!11 | |ontology_enrichment_uberon=UBERON:0001781!1.75e-09!3;UBERON:0001782!1.75e-09!3;UBERON:0005424!1.75e-09!3;UBERON:0007625!1.81e-08!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0001781;2.17e-98;3!UBERON:0001782;2.17e-98;3!UBERON:0000966;1.65e-59;5!UBERON:0005388;1.65e-59;5!UBERON:0001802;1.65e-59;5!UBERON:0007625;1.28e-27;11!UBERON:0000019;2.27e-16;19!UBERON:0000047;2.27e-16;19!UBERON:0004088;2.27e-16;19!UBERON:0010230;2.27e-16;19!UBERON:0000970;1.36e-15;20!UBERON:0002104;6.85e-15;21!UBERON:0001456;6.85e-15;21!UBERON:0000020;1.15e-13;23!UBERON:0001032;3.94e-13;24!UBERON:0004456;3.94e-13;24!UBERON:0003498;2.89e-12;3!UBERON:0005985;2.89e-12;3!UBERON:0001621;2.89e-12;3!UBERON:0010371;1.36e-09;31!UBERON:0000948;5.57e-07;22!UBERON:0000033;7.74e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,2.17e-98,3;UBERON:0005424,2.17e-98,3;UBERON:0001781,4.26e-74,4;UBERON:0000966,8.88e-50,6;UBERON:0005388,8.88e-50,6;UBERON:0001802,8.88e-50,6;UBERON:0007625,1.28e-27,11;UBERON:0000019,1.36e-15,20;UBERON:0000047,1.36e-15,20;UBERON:0010312,1.36e-15,20;UBERON:0004088,1.36e-15,20;UBERON:0010230,1.36e-15,20;UBERON:0003072,1.36e-15,20;UBERON:0004128,1.36e-15,20;UBERON:0003071,1.36e-15,20;UBERON:0000970,6.85e-15,21;UBERON:0002104,6.85e-15,21;UBERON:0001456,2.99e-14,22;UBERON:0000020,3.94e-13,24;UBERON:0001032,3.94e-13,24;UBERON:0004456,3.94e-13,24;UBERON:0001621,2.89e-12,3;UBERON:0005085,2.44e-10,31;UBERON:0003498,7.01e-08,5;UBERON:0005985,7.01e-08,5;UBERON:0001444,8.57e-07,49 | |||
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|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0,0.730310090387373,0.487932798790507,0.123121058076788,0,0,0.85870796139317,0.547497700291537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378139268656271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397227542439656,0.286836620748814,0,0,0,0.24666754841716,0,0,0,0,0,0,0.312160076830321,0,0,0.23486899728753,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0,0.113432183160021,0.179389635688862,0,0,0,0,0,0,0,0.0974370051611986,0,0.184099797284599,0,0,0.201504196455281,0,0,0,0,0,0,0,0,0,0,0,0,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.927443239800615,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579125226670317,0,0,0,0,0,0,0.76228387266739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0.496215615637554,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,16.1563578823325,1.64007322849853,1.30151357865721,0,0.0915694648183434,0,0,0,0,0.096670718292122,0,0,0,0,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0.464845549297286,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0.179872457583315,0.274537029736055,0,0.202182481573316,1.58510321173008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.37486652257111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.689486746482929,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0,0,0.19871461170299,0,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0.313808538937,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236349546921671,0.329663433524666,0.404421263125109,0.393709926058995,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0.511164065356265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0.144921028610825,0.149254802886874,0,0,0,0,0,2.51724075236616,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0.179088841081487,0.308801447160972,0,0.530067437837643,0,0,0,0.690860683462397,0,0,0,0,0,0.327609848846413,0.983091635014877,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392590874004102,0,0,0.808679663052368,0,0,0,0,0.40341013740704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171488009437418,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347716544605159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0.109265571963696,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr2:235591306..235591328,+ | |short_description=p@chr2:235591306..235591328,+ | ||
}} | }} |
Latest revision as of 08:03, 29 July 2015
Short description: | p@chr2:235591306..235591328, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:235591306..235591328, + |
Coexpression cluster: | C839_Retinal_Mallassezderived_retina_medulla_mesothelioma_osteosarcoma_Saos2 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 2.17e-98 | 3 |
visual pigment cell | 4.26e-74 | 4 |
pigment cell | 6.67e-22 | 14 |
smooth muscle cell of the coronary artery | 2.89e-12 | 3 |
cardiac mesenchymal cell | 1.32e-09 | 4 |
migratory trunk neural crest cell | 1.32e-09 | 4 |
cardiocyte | 3.01e-09 | 16 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 2.17e-98 | 3 |
presumptive retinal pigmented epithelium | 2.17e-98 | 3 |
layer of retina | 4.26e-74 | 4 |
retina | 8.88e-50 | 6 |
photoreceptor array | 8.88e-50 | 6 |
posterior segment of eyeball | 8.88e-50 | 6 |
pigment epithelium of eye | 1.28e-27 | 11 |
camera-type eye | 1.36e-15 | 20 |
simple eye | 1.36e-15 | 20 |
immature eye | 1.36e-15 | 20 |
ocular region | 1.36e-15 | 20 |
eyeball of camera-type eye | 1.36e-15 | 20 |
optic cup | 1.36e-15 | 20 |
optic vesicle | 1.36e-15 | 20 |
eye primordium | 1.36e-15 | 20 |
eye | 6.85e-15 | 21 |
visual system | 6.85e-15 | 21 |
face | 2.99e-14 | 22 |
sense organ | 3.94e-13 | 24 |
sensory system | 3.94e-13 | 24 |
entire sense organ system | 3.94e-13 | 24 |
coronary artery | 2.89e-12 | 3 |
ectodermal placode | 2.44e-10 | 31 |
heart blood vessel | 7.01e-08 | 5 |
coronary vessel | 7.01e-08 | 5 |
subdivision of head | 8.57e-07 | 49 |