FFCP PHASE1:Hg19::chr2:233246764..233246778,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=250 | |EntrezGene=250 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=439 | |HGNC=439 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=292bp_to_AF217992_5end | |association_with_transcript=292bp_to_AF217992_5end | ||
|cluster_id=chr2:233246764..233246778,+ | |||
|coexpression_cluster_id=C106 | |coexpression_cluster_id=C106 | ||
|description=CAGE_peak_3_at_ALPP_5end | |description=CAGE_peak_3_at_ALPP_5end | ||
|id=chr2:233246764..233246778,+ | |id=chr2:233246764..233246778,+ | ||
|ontology_enrichment_celltype=CL:0002541!9.44e-17!3;CL:0000066!3.71e-08!254;CL:0000039!9.58e-07!7;CL:0000586!9.58e-07!7 | |ontology_enrichment_celltype=CL:0002541!9.44e-17!3;CL:0000066!3.71e-08!254;CL:0000039!9.58e-07!7;CL:0000586!9.58e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0002541;2.32e-18;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,1.94e-18,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.85e-36;29!UBERON:0003124;1.72e-14;1!UBERON:0006595;5.77e-08;86 | |||
|ontology_enrichment_disease=DOID:305!6.76e-17!106;DOID:0050687!1.28e-12!143;DOID:162!3.78e-09!235;DOID:14566!7.62e-09!239 | |ontology_enrichment_disease=DOID:305!6.76e-17!106;DOID:0050687!1.28e-12!143;DOID:162!3.78e-09!235;DOID:14566!7.62e-09!239 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.64e-11,106;DOID:0050687,3.18e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.57e-48!9;UBERON:0001557!6.71e-27!19;UBERON:0000476!9.44e-17!3;UBERON:0000920!9.44e-17!3;UBERON:0005631!4.24e-13!14;UBERON:0000158!4.24e-13!14;UBERON:0008947!1.58e-12!38;UBERON:0003258!1.58e-12!38;UBERON:0003124!1.66e-12!7;UBERON:0000065!3.46e-10!53;UBERON:0000072!5.49e-10!46;UBERON:0000077!5.04e-08!130;UBERON:0004921!5.37e-08!129;UBERON:0004185!5.37e-08!129;UBERON:0001041!1.08e-07!98;UBERON:0000478!2.19e-07!24;UBERON:0004119!5.61e-07!169;UBERON:0000925!5.61e-07!169;UBERON:0006595!5.61e-07!169;UBERON:0001004!6.08e-07!72 | |ontology_enrichment_uberon=UBERON:0001737!2.57e-48!9;UBERON:0001557!6.71e-27!19;UBERON:0000476!9.44e-17!3;UBERON:0000920!9.44e-17!3;UBERON:0005631!4.24e-13!14;UBERON:0000158!4.24e-13!14;UBERON:0008947!1.58e-12!38;UBERON:0003258!1.58e-12!38;UBERON:0003124!1.66e-12!7;UBERON:0000065!3.46e-10!53;UBERON:0000072!5.49e-10!46;UBERON:0000077!5.04e-08!130;UBERON:0004921!5.37e-08!129;UBERON:0004185!5.37e-08!129;UBERON:0001041!1.08e-07!98;UBERON:0000478!2.19e-07!24;UBERON:0004119!5.61e-07!169;UBERON:0000925!5.61e-07!169;UBERON:0006595!5.61e-07!169;UBERON:0001004!6.08e-07!72 | ||
|ontology_enrichment_uberon_v019=UBERON:0001737;6.10e-119;9!UBERON:0001557;6.10e-119;9!UBERON:0000072;1.87e-26;37!UBERON:0000065;2.59e-22;44!UBERON:0003124;2.32e-18;3!UBERON:0000920;2.32e-18;3!UBERON:0001004;9.99e-12;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,6.11e-119,9;UBERON:0001557,5.03e-56,19;UBERON:0008947,1.23e-27,38;UBERON:0003258,1.23e-27,38;UBERON:0000072,3.49e-22,47;UBERON:0000065,3.40e-19,54;UBERON:0000920,1.94e-18,3;UBERON:0003124,1.84e-17,7;UBERON:0001041,2.84e-14,87;UBERON:0001004,9.29e-14,74;UBERON:0004921,3.99e-10,118;UBERON:0005631,4.95e-09,14;UBERON:0000158,4.95e-09,14;UBERON:0004119,9.22e-09,160;UBERON:0000925,9.22e-09,160;UBERON:0006595,9.22e-09,160;UBERON:0001007,4.96e-08,145;UBERON:0001555,4.96e-08,145;UBERON:0007026,4.96e-08,145 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.9204048094032,26.9735504124963,22.1730147492803,31.3234882559999,21.7879444092406,16.3716727186657,22.3819971545873,18.2485962566572,27.3170481431937,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54561517471583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22386941009813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142283686696828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108647371922008,1.91400695839152,0.732780747214898,3.73124343213044,0,0,0,0,0,0,0,0,0,0.163232808159148,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0,0.522355239482415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79828648623917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680117776536817,0,0.244736704506468,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.193285325855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727345877715,0,0.179650404213174,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.9204048094032,26.9735504124963,22.1730147492803,31.3234882559999,21.7879444092406,16.3716727186657,22.3819971545873,18.2485962566572,27.3170481431937,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54561517471583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22386941009813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142283686696828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108647371922008,1.91400695839152,0.732780747214898,3.73124343213044,0,0,0,0,0,0,0,0,0,0.163232808159148,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0,0.522355239482415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79828648623917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680117776536817,0,0.244736704506468,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.193285325855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727345877715,0,0.179650404213174,0,0,0,0,0,0 | ||
|short_description=p3@ALPP | |short_description=p3@ALPP | ||
}} | }} |
Latest revision as of 21:10, 15 September 2015
Short description: | p3@ALPP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ALPP_5end |
Coexpression cluster: | C106_Hep2_epitheloid_placenta_cervical_rectal_anaplastic_glassy |
Association with transcript: | 292bp_to_AF217992_5end |
EntrezGene: | ALPP |
HGNC: | 439 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 1.94e-18 | 3 |
Ontology term | p-value | n |
---|---|---|
larynx | 6.11e-119 | 9 |
upper respiratory tract | 5.03e-56 | 19 |
respiratory primordium | 1.23e-27 | 38 |
endoderm of foregut | 1.23e-27 | 38 |
segment of respiratory tract | 3.49e-22 | 47 |
respiratory tract | 3.40e-19 | 54 |
egg chorion | 1.94e-18 | 3 |
chorion | 1.84e-17 | 7 |
foregut | 2.84e-14 | 87 |
respiratory system | 9.29e-14 | 74 |
subdivision of digestive tract | 3.99e-10 | 118 |
extraembryonic membrane | 4.95e-09 | 14 |
membranous layer | 4.95e-09 | 14 |
endoderm-derived structure | 9.22e-09 | 160 |
endoderm | 9.22e-09 | 160 |
presumptive endoderm | 9.22e-09 | 160 |
digestive system | 4.96e-08 | 145 |
digestive tract | 4.96e-08 | 145 |
primitive gut | 4.96e-08 | 145 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.64e-11 | 106 |
cell type cancer | 3.18e-08 | 143 |