FFCP PHASE1:Hg19::chr2:114002106..114002117,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:114002106..114002117,- | |||
|coexpression_cluster_id=C1493 | |coexpression_cluster_id=C1493 | ||
|description=CAGE_peak_at_chr2:114002106..114002117,- | |description=CAGE_peak_at_chr2:114002106..114002117,- | ||
|id=chr2:114002106..114002117,- | |id=chr2:114002106..114002117,- | ||
|ontology_enrichment_celltype=CL:1000497!5.97e-21!18;CL:0002518!5.97e-21!18;CL:1000507!7.82e-21!12;CL:1000494!7.82e-21!12;CL:0002149!7.17e-18!6;CL:0002255!7.17e-18!6;CL:1000449!2.72e-15!16;CL:0000239!7.39e-13!3;CL:1000615!7.39e-13!3;CL:0002306!7.39e-13!3;CL:0000159!1.10e-09!2;CL:0002681!1.15e-07!13;CL:0002584!1.15e-07!13 | |ontology_enrichment_celltype=CL:1000497!5.97e-21!18;CL:0002518!5.97e-21!18;CL:1000507!7.82e-21!12;CL:1000494!7.82e-21!12;CL:0002149!7.17e-18!6;CL:0002255!7.17e-18!6;CL:1000449!2.72e-15!16;CL:0000239!7.39e-13!3;CL:1000615!7.39e-13!3;CL:0002306!7.39e-13!3;CL:0000159!1.10e-09!2;CL:0002681!1.15e-07!13;CL:0002584!1.15e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0000159;1.84e-24;2!CL:0002149;1.21e-18;6!CL:0002255;1.21e-18;6!CL:0000319;2.62e-13;1!CL:0002581;6.05e-13;1!CL:0000313;6.05e-13;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000159,3.76e-24,2;CL:0002149,1.14e-18,6;CL:0002255,1.14e-18,6;CL:0000319,2.95e-13,1;CL:0002581,5.38e-13,1;CL:0000313,1.09e-12,1 | |||
|ontology_enrichment_development_v019=UBERON:0007123;1.19e-21;5!UBERON:0005754;6.05e-13;1!UBERON:0005795;2.00e-11;10!UBERON:0007297;4.17e-07;2 | |||
|ontology_enrichment_disease=DOID:3001!7.17e-18!6;DOID:299!2.62e-12!25;DOID:120!4.03e-11!27;DOID:193!3.07e-10!29;DOID:4468!1.54e-09!2 | |ontology_enrichment_disease=DOID:3001!7.17e-18!6;DOID:299!2.62e-12!25;DOID:120!4.03e-11!27;DOID:193!3.07e-10!29;DOID:4468!1.54e-09!2 | ||
|ontology_enrichment_disease_v019=DOID:3001;1.21e-18;6!DOID:299;7.31e-17;25!DOID:3030;2.62e-13;1!DOID:2152;6.05e-13;1!DOID:120;5.12e-11;27!DOID:193;2.99e-10;29!DOID:4468;2.15e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3001,1.14e-18,6;DOID:299,8.41e-17,25;DOID:3030,2.95e-13,1;DOID:2152,1.09e-12,1;DOID:120,5.57e-11,27;DOID:193,3.23e-10,29;DOID:4468,2.15e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0000489!8.12e-29!32;UBERON:0002113!9.51e-27!27;UBERON:0003918!9.51e-27!27;UBERON:0005095!9.51e-27!27;UBERON:0007687!9.51e-27!27;UBERON:0006554!1.40e-22!44;UBERON:0001008!5.46e-22!45;UBERON:0000080!4.59e-21!18;UBERON:0002120!4.59e-21!18;UBERON:0004875!4.59e-21!18;UBERON:0005721!4.59e-21!18;UBERON:0005754!4.59e-21!18;UBERON:0007297!4.59e-21!18;UBERON:0009773!7.82e-21!12;UBERON:0001231!7.82e-21!12;UBERON:0004810!7.82e-21!12;UBERON:0004876!9.30e-19!20;UBERON:0006555!5.32e-18!17;UBERON:0005103!5.32e-18!17;UBERON:0000083!5.32e-18!17;UBERON:0009201!5.32e-18!17;UBERON:0004819!5.32e-18!17;UBERON:0006553!5.32e-18!17;UBERON:0003074!5.32e-18!17;UBERON:0003060!5.32e-18!17;UBERON:0003887!9.05e-18!21;UBERON:0000058!5.34e-17!26;UBERON:0003064!1.31e-15!37;UBERON:0004211!2.72e-15!16;UBERON:0001285!2.72e-15!16;UBERON:0007684!2.72e-15!16;UBERON:0003220!2.72e-15!16;UBERON:0004208!2.72e-15!16;UBERON:0003103!1.05e-14!69;UBERON:0004175!1.24e-14!25;UBERON:0002046!4.03e-14!5;UBERON:0004117!4.03e-14!5;UBERON:0007689!4.03e-14!5;UBERON:0007123!4.03e-14!5;UBERON:0003091!4.03e-14!5;UBERON:0006947!3.68e-13!3;UBERON:0004054!3.68e-13!3;UBERON:0006853!7.39e-13!3;UBERON:0007685!7.39e-13!3;UBERON:0004134!7.39e-13!3;UBERON:0005156!5.46e-12!59;UBERON:0000990!5.46e-12!59;UBERON:0003133!1.57e-11!48;UBERON:0005172!1.68e-11!55;UBERON:0005173!1.68e-11!55;UBERON:0002417!4.56e-10!61;UBERON:0000916!4.56e-10!61;UBERON:0005904!5.55e-10!4;UBERON:0003886!1.78e-09!63;UBERON:0000341!1.82e-09!2;UBERON:0003134!4.25e-09!37;UBERON:0000474!4.25e-09!37;UBERON:0000995!9.98e-09!21;UBERON:0005795!2.76e-08!22;UBERON:0003975!2.76e-08!22;UBERON:0002553!3.12e-08!70;UBERON:0003100!4.99e-08!41;UBERON:0001225!1.15e-07!13;UBERON:0008987!1.15e-07!13;UBERON:0005177!4.97e-07!107 | |ontology_enrichment_uberon=UBERON:0000489!8.12e-29!32;UBERON:0002113!9.51e-27!27;UBERON:0003918!9.51e-27!27;UBERON:0005095!9.51e-27!27;UBERON:0007687!9.51e-27!27;UBERON:0006554!1.40e-22!44;UBERON:0001008!5.46e-22!45;UBERON:0000080!4.59e-21!18;UBERON:0002120!4.59e-21!18;UBERON:0004875!4.59e-21!18;UBERON:0005721!4.59e-21!18;UBERON:0005754!4.59e-21!18;UBERON:0007297!4.59e-21!18;UBERON:0009773!7.82e-21!12;UBERON:0001231!7.82e-21!12;UBERON:0004810!7.82e-21!12;UBERON:0004876!9.30e-19!20;UBERON:0006555!5.32e-18!17;UBERON:0005103!5.32e-18!17;UBERON:0000083!5.32e-18!17;UBERON:0009201!5.32e-18!17;UBERON:0004819!5.32e-18!17;UBERON:0006553!5.32e-18!17;UBERON:0003074!5.32e-18!17;UBERON:0003060!5.32e-18!17;UBERON:0003887!9.05e-18!21;UBERON:0000058!5.34e-17!26;UBERON:0003064!1.31e-15!37;UBERON:0004211!2.72e-15!16;UBERON:0001285!2.72e-15!16;UBERON:0007684!2.72e-15!16;UBERON:0003220!2.72e-15!16;UBERON:0004208!2.72e-15!16;UBERON:0003103!1.05e-14!69;UBERON:0004175!1.24e-14!25;UBERON:0002046!4.03e-14!5;UBERON:0004117!4.03e-14!5;UBERON:0007689!4.03e-14!5;UBERON:0007123!4.03e-14!5;UBERON:0003091!4.03e-14!5;UBERON:0006947!3.68e-13!3;UBERON:0004054!3.68e-13!3;UBERON:0006853!7.39e-13!3;UBERON:0007685!7.39e-13!3;UBERON:0004134!7.39e-13!3;UBERON:0005156!5.46e-12!59;UBERON:0000990!5.46e-12!59;UBERON:0003133!1.57e-11!48;UBERON:0005172!1.68e-11!55;UBERON:0005173!1.68e-11!55;UBERON:0002417!4.56e-10!61;UBERON:0000916!4.56e-10!61;UBERON:0005904!5.55e-10!4;UBERON:0003886!1.78e-09!63;UBERON:0000341!1.82e-09!2;UBERON:0003134!4.25e-09!37;UBERON:0000474!4.25e-09!37;UBERON:0000995!9.98e-09!21;UBERON:0005795!2.76e-08!22;UBERON:0003975!2.76e-08!22;UBERON:0002553!3.12e-08!70;UBERON:0003100!4.99e-08!41;UBERON:0001225!1.15e-07!13;UBERON:0008987!1.15e-07!13;UBERON:0005177!4.97e-07!107 | ||
|ontology_enrichment_uberon_v019=UBERON:0002046;1.19e-21;5!UBERON:0000998;6.05e-13;1!UBERON:0004911;6.05e-13;1!UBERON:0006868;6.05e-13;1!UBERON:0004175;2.49e-09;21!UBERON:0000341;4.17e-07;2!UBERON:0004909;4.17e-07;2!UBERON:0005406;4.17e-07;2!UBERON:0000995;6.29e-07;17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002046,9.68e-22,5;UBERON:0004117,9.68e-22,5;UBERON:0007689,9.68e-22,5;UBERON:0007123,9.68e-22,5;UBERON:0003091,9.68e-22,5;UBERON:0000998,3.76e-13,1;UBERON:0006868,3.76e-13,1;UBERON:0004911,1.09e-12,1;UBERON:0009722,3.24e-10,11;UBERON:0007690,3.24e-10,11;UBERON:0004175,6.62e-08,25;UBERON:0002113,2.06e-07,26;UBERON:0003918,2.06e-07,26;UBERON:0011143,2.06e-07,26;UBERON:0005095,2.06e-07,26;UBERON:0007687,2.06e-07,26;UBERON:0000341,3.48e-07,2;UBERON:0005406,3.93e-07,2;UBERON:0004909,5.60e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48418066444991,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0.616122696835318,0.784349769176855,1.46139224653261,0.73886140225013,0,0,0,0,0.812839312631559,0,0.254876273045038,1.66215201785745,0.447749509444357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22439575525196,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.22892451659305,0.489698424477443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.789168805698781,0,0,0,0,0,0,0,0,0,0.284609546029793,0,3.47119476670262,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26089131678717,0.577000469484979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429642228169954,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512483037175893,0,0,0,0,0,0,0,2.21195617878347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,1.21023041222112,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156986185701028,0,0,0,0.647782773655864,0.47775168788705,0,0,0,0,0,0,0,0,0,0,0,1.69354820076372,2.2910686854405,0.93061915699296,3.82215575590973,1.00669888618013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,1.05868461514708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639701945702943,1.66645102024618,0,0,0.784923038064294,1.90941474834495,2.22328907854041,0,0,0,0,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48418066444991,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0.616122696835318,0.784349769176855,1.46139224653261,0.73886140225013,0,0,0,0,0.812839312631559,0,0.254876273045038,1.66215201785745,0.447749509444357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22439575525196,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.22892451659305,0.489698424477443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.789168805698781,0,0,0,0,0,0,0,0,0,0.284609546029793,0,3.47119476670262,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26089131678717,0.577000469484979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429642228169954,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512483037175893,0,0,0,0,0,0,0,2.21195617878347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,1.21023041222112,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156986185701028,0,0,0,0.647782773655864,0.47775168788705,0,0,0,0,0,0,0,0,0,0,0,1.69354820076372,2.2910686854405,0.93061915699296,3.82215575590973,1.00669888618013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,1.05868461514708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639701945702943,1.66645102024618,0,0,0.784923038064294,1.90941474834495,2.22328907854041,0,0,0,0,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p@chr2:114002106..114002117,- | |short_description=p@chr2:114002106..114002117,- | ||
}} | }} |
Latest revision as of 23:38, 28 July 2015
Short description: | p@chr2:114002106..114002117, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:114002106..114002117, - |
Coexpression cluster: | C1493_clear_thyroid_endometrioid_serous_throat_anaplastic_renal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
seromucus secreting cell | 3.76e-24 | 2 |
epithelial cell of uterus | 1.14e-18 | 6 |
stromal cell of endometrium | 1.14e-18 | 6 |
mucus secreting cell | 2.95e-13 | 1 |
perirenal preadipocyte | 5.38e-13 | 1 |
serous secreting cell | 1.09e-12 | 1 |
Ontology term | p-value | n |
---|---|---|
thyroid gland | 9.68e-22 | 5 |
pharyngeal pouch | 9.68e-22 | 5 |
thyroid diverticulum | 9.68e-22 | 5 |
pharyngeal pouch 2 | 9.68e-22 | 5 |
thyroid primordium | 9.68e-22 | 5 |
seminal vesicle | 3.76e-13 | 1 |
seminal fluid secreting gland | 3.76e-13 | 1 |
epithelium of female gonad | 1.09e-12 | 1 |
entire pharyngeal arch endoderm | 3.24e-10 | 11 |
early pharyngeal endoderm | 3.24e-10 | 11 |
internal genitalia | 6.62e-08 | 25 |
kidney | 2.06e-07 | 26 |
kidney mesenchyme | 2.06e-07 | 26 |
upper urinary tract | 2.06e-07 | 26 |
kidney rudiment | 2.06e-07 | 26 |
kidney field | 2.06e-07 | 26 |
throat | 3.48e-07 | 2 |
perirenal fat | 3.93e-07 | 2 |
epithelium of gonad | 5.60e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 1.14e-18 | 6 |
adenocarcinoma | 8.41e-17 | 25 |
mucinous adenocarcinoma | 2.95e-13 | 1 |
ovary epithelial cancer | 1.09e-12 | 1 |
female reproductive organ cancer | 5.57e-11 | 27 |
reproductive organ cancer | 3.23e-10 | 29 |
clear cell adenocarcinoma | 2.15e-07 | 2 |