FFCP PHASE1:Hg19::chr19:12917364..12917407,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:12917364..12917407,+
|short_description=p2@RNASEH2A
|description=CAGE_peak_2_at_RNASEH2A_5end
|association_with_transcript=0bp_to_uc002mvf.1_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10535 | |EntrezGene=10535 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18518 | |HGNC=18518 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc002mvf.1_5end | |||
|cluster_id=chr19:12917364..12917407,+ | |||
|coexpression_cluster_id=C1713 | |||
|description=CAGE_peak_2_at_RNASEH2A_5end | |||
|id=chr19:12917364..12917407,+ | |||
|ontology_enrichment_celltype=CL:0000012!1.45e-19!682;CL:0000548!2.36e-19!679;CL:0000004!2.36e-19!679;CL:0000255!2.36e-19!679;CL:0000066!9.34e-18!254;CL:0000003!2.95e-14!722;CL:0002321!1.69e-11!248;CL:0000220!6.88e-11!246;CL:0000333!4.14e-09!41;CL:0000144!1.07e-08!625;CL:0000133!8.08e-08!59;CL:0000221!8.44e-08!71;CL:0000063!4.88e-07!578;CL:0002319!5.62e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:1000449;6.04e-07;15!CL:0002319;6.52e-07;25!CL:1000497;7.03e-07;17!CL:0002518;7.03e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.14e-18,253;CL:0002321,1.52e-11,250;CL:0000333,4.14e-09,41;CL:0000133,8.08e-08,59;CL:0000221,1.31e-07,72;CL:0002319,5.62e-07,25;CL:1000449,5.89e-07,15;CL:1000497,7.40e-07,17;CL:0002518,7.40e-07,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.79e-27!235;DOID:14566!1.23e-26!239;DOID:2531!2.76e-15!51;DOID:0060083!2.76e-15!51;DOID:0050686!4.24e-15!137;DOID:0050687!1.90e-12!143;DOID:1240!2.41e-12!39;DOID:305!5.92e-10!106;DOID:8692!3.26e-09!31 | |||
|ontology_enrichment_disease_v019=DOID:2531;1.05e-09;51!DOID:0060083;1.05e-09;51!DOID:1240;1.10e-09;39!DOID:8692;5.88e-09;31 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.79e-27,235;DOID:14566,1.23e-26,239;DOID:2531,2.76e-15,51;DOID:0060083,2.76e-15,51;DOID:0050686,4.24e-15,137;DOID:0050687,1.90e-12,143;DOID:1240,2.40e-12,39;DOID:305,5.92e-10,106;DOID:8692,3.25e-09,31 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.87e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.84e-07;9!UBERON:0001557;1.84e-07;9!UBERON:0002113;2.45e-07;24!UBERON:0011143;2.45e-07;24!UBERON:0006555;6.04e-07;15!UBERON:0004819;6.04e-07;15!UBERON:0001285;6.04e-07;15!UBERON:0007684;6.04e-07;15!UBERON:0000353;9.12e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.87e-07,9;UBERON:0004211,5.89e-07,15;UBERON:0009773,5.89e-07,15;UBERON:0001231,5.89e-07,15;UBERON:0001285,5.89e-07,15;UBERON:0007684,5.89e-07,15;UBERON:0004208,5.89e-07,15;UBERON:0000353,8.94e-07,15 | |||
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| ||
|short_description=p2@RNASEH2A | |||
}} | }} |
Latest revision as of 21:21, 15 September 2015
Short description: | p2@RNASEH2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RNASEH2A_5end |
Coexpression cluster: | C1713_Alveolar_Renal_Hodgkin_chronic_MCF7_Placental_Melanocyte |
Association with transcript: | 0bp_to_uc002mvf.1_5end |
EntrezGene: | RNASEH2A |
HGNC: | 18518 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.14e-18 | 253 |
embryonic cell | 1.52e-11 | 250 |
migratory neural crest cell | 4.14e-09 | 41 |
neurectodermal cell | 8.08e-08 | 59 |
ectodermal cell | 1.31e-07 | 72 |
neural cell | 5.62e-07 | 25 |
epithelial cell of nephron | 5.89e-07 | 15 |
kidney cell | 7.40e-07 | 17 |
kidney epithelial cell | 7.40e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.87e-07 | 9 |
nephron epithelium | 5.89e-07 | 15 |
renal tubule | 5.89e-07 | 15 |
nephron tubule | 5.89e-07 | 15 |
nephron | 5.89e-07 | 15 |
uriniferous tubule | 5.89e-07 | 15 |
nephrogenic mesenchyme | 5.89e-07 | 15 |
parenchyma | 8.94e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.79e-27 | 235 |
disease of cellular proliferation | 1.23e-26 | 239 |
hematologic cancer | 2.76e-15 | 51 |
immune system cancer | 2.76e-15 | 51 |
organ system cancer | 4.24e-15 | 137 |
cell type cancer | 1.90e-12 | 143 |
leukemia | 2.40e-12 | 39 |
carcinoma | 5.92e-10 | 106 |
myeloid leukemia | 3.25e-09 | 31 |