FFCP PHASE1:Hg19::chr1:60139264..60139277,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55277 | |EntrezGene=55277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25610 | |HGNC=25610 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-51bp_to_ENST00000472783_5end | |association_with_transcript=-51bp_to_ENST00000472783_5end | ||
|cluster_id=chr1:60139264..60139277,+ | |||
|coexpression_cluster_id=C0 | |coexpression_cluster_id=C0 | ||
|description=CAGE_peak_8_at_FGGY_5end | |description=CAGE_peak_8_at_FGGY_5end | ||
|id=chr1:60139264..60139277,+ | |id=chr1:60139264..60139277,+ | ||
|ontology_enrichment_celltype=CL:0002057!1.90e-39!42;CL:0000860!2.50e-36!45;CL:0002009!1.19e-26!65;CL:0002194!1.82e-25!63;CL:0000576!1.82e-25!63;CL:0000040!1.82e-25!63;CL:0000559!1.82e-25!63;CL:0000557!8.64e-24!71;CL:0000839!3.14e-22!70;CL:0000766!1.21e-21!76;CL:0000763!5.17e-16!112;CL:0000049!5.17e-16!112;CL:0002087!2.49e-12!119;CL:0000738!3.02e-12!140;CL:0002031!1.24e-11!124;CL:0002166!1.76e-09!3;CL:0000037!2.54e-09!172;CL:0000566!2.54e-09!172;CL:0002032!2.96e-09!165;CL:0000837!2.96e-09!165;CL:0000988!2.17e-08!182;CL:0002097!7.10e-07!2 | |ontology_enrichment_celltype=CL:0002057!1.90e-39!42;CL:0000860!2.50e-36!45;CL:0002009!1.19e-26!65;CL:0002194!1.82e-25!63;CL:0000576!1.82e-25!63;CL:0000040!1.82e-25!63;CL:0000559!1.82e-25!63;CL:0000557!8.64e-24!71;CL:0000839!3.14e-22!70;CL:0000766!1.21e-21!76;CL:0000763!5.17e-16!112;CL:0000049!5.17e-16!112;CL:0002087!2.49e-12!119;CL:0000738!3.02e-12!140;CL:0002031!1.24e-11!124;CL:0002166!1.76e-09!3;CL:0000037!2.54e-09!172;CL:0000566!2.54e-09!172;CL:0002032!2.96e-09!165;CL:0000837!2.96e-09!165;CL:0000988!2.17e-08!182;CL:0002097!7.10e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.24e-56;33!CL:0002057;1.24e-56;33!CL:0000473;5.18e-41;39!CL:0000234;5.18e-41;39!CL:0000576;4.29e-23;48!CL:0000766;2.21e-17;69!CL:0002087;1.15e-11;104!CL:0000763;1.32e-09;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.68e-48,42;CL:0002057,1.68e-48,42;CL:0000473,2.86e-42,48;CL:0000234,2.86e-42,48;CL:0002194,1.55e-33,59;CL:0000576,1.55e-33,59;CL:0000040,1.55e-33,59;CL:0000559,1.55e-33,59;CL:0002009,2.08e-32,61;CL:0000839,6.98e-30,66;CL:0000557,2.02e-29,67;CL:0000766,2.63e-27,72;CL:0000763,8.75e-18,108;CL:0000049,8.75e-18,108;CL:0002087,1.29e-16,115;CL:0002031,7.29e-16,120;CL:0000738,8.02e-14,136;CL:0002032,1.96e-11,161;CL:0000837,1.96e-11,161;CL:0000037,6.86e-11,168;CL:0000988,2.97e-10,177 | |||
|ontology_enrichment_development_v019=CL:0002057;2.76e-32;42!UBERON:0005425;1.83e-13;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3112;1.18e-13;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3112,1.10e-13,1 | |||
|ontology_enrichment_uberon=UBERON:0002371!2.65e-20!80;UBERON:0004765!7.98e-19!101;UBERON:0001434!7.98e-19!101;UBERON:0001474!2.19e-18!86;UBERON:0002390!6.98e-17!102;UBERON:0003061!6.98e-17!102;UBERON:0002193!1.06e-14!112;UBERON:0002405!5.15e-13!115;UBERON:0002204!3.99e-09!167;UBERON:0001708!3.37e-07!4;UBERON:0001704!3.37e-07!4;UBERON:0003081!4.36e-07!216 | |ontology_enrichment_uberon=UBERON:0002371!2.65e-20!80;UBERON:0004765!7.98e-19!101;UBERON:0001434!7.98e-19!101;UBERON:0001474!2.19e-18!86;UBERON:0002390!6.98e-17!102;UBERON:0003061!6.98e-17!102;UBERON:0002193!1.06e-14!112;UBERON:0002405!5.15e-13!115;UBERON:0002204!3.99e-09!167;UBERON:0001708!3.37e-07!4;UBERON:0001704!3.37e-07!4;UBERON:0003081!4.36e-07!216 | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.83e-13;1!UBERON:0001785;1.83e-13;1!UBERON:0002464;1.83e-13;1!UBERON:0004904;1.83e-13;1!UBERON:0001021;1.83e-13;1!UBERON:0003714;2.25e-07;2!UBERON:0005162;2.25e-07;2!UBERON:0000122;2.25e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.23e-26,76;UBERON:0001474,7.75e-24,82;UBERON:0004765,1.31e-21,90;UBERON:0002405,7.18e-21,93;UBERON:0002390,9.73e-20,98;UBERON:0003061,9.73e-20,98;UBERON:0001434,2.57e-19,100;UBERON:0002193,8.75e-18,108;UBERON:0000941,2.07e-13,1;UBERON:0001785,2.07e-13,1;UBERON:0002464,2.07e-13,1;UBERON:0004904,2.07e-13,1;UBERON:0001021,2.07e-13,1;UBERON:0003902,2.07e-13,1;UBERON:0005425,2.07e-13,1;UBERON:0002204,5.77e-11,167;UBERON:0003081,9.99e-09,203;UBERON:0003714,2.40e-07,2;UBERON:0005162,2.40e-07,2;UBERON:0000122,2.40e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0.436194716338694,0,0.970336244751265,0.464858073811369,0.822335776043652,1.85823822537062,0,0.512321413058201,0,4.13694816883942,1.93645405075148,5.41705946377367,0.564727018627814,0.818718450173537,0.898893937780338,5.50951006267625,5.45579346029359,5.75403413219137,0,0.797854630486527,0,6.96502172708602,5.10646702222026,8.71951148593805,0.251248665256743,0,0.65156653411535,5.44859552370032,5.52416453981347,9.17740923578565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0.93733833986777,0.503946384596579,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0.907170879989041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0.384380134730212,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.23874448473769,0,0,0,0,0.111308705022906,0,0,0,0,0,0.102268682502155,0.369254416383208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0.108647371922008,0.638002319463839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.674921674654501,0,0,0,0,0,3.37921076862101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.770479321629213,0.428883182749851,0,0,0,0.489473409012935,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0.60511520611056,0,0,4.25806985526251,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.0887023701626388,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0.955538938977433,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109265571963696,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0.0620747142958579,0.112131862580613,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0.436194716338694,0,0.970336244751265,0.464858073811369,0.822335776043652,1.85823822537062,0,0.512321413058201,0,4.13694816883942,1.93645405075148,5.41705946377367,0.564727018627814,0.818718450173537,0.898893937780338,5.50951006267625,5.45579346029359,5.75403413219137,0,0.797854630486527,0,6.96502172708602,5.10646702222026,8.71951148593805,0.251248665256743,0,0.65156653411535,5.44859552370032,5.52416453981347,9.17740923578565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0.93733833986777,0.503946384596579,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0.907170879989041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0.384380134730212,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.23874448473769,0,0,0,0,0.111308705022906,0,0,0,0,0,0.102268682502155,0.369254416383208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0.108647371922008,0.638002319463839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.674921674654501,0,0,0,0,0,3.37921076862101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.770479321629213,0.428883182749851,0,0,0,0.489473409012935,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0.60511520611056,0,0,4.25806985526251,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.0887023701626388,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0.955538938977433,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109265571963696,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0.0620747142958579,0.112131862580613,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p8@FGGY | |short_description=p8@FGGY | ||
}} | }} |
Latest revision as of 17:38, 18 September 2015
Short description: | p8@FGGY |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_FGGY_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -51bp_to_ENST00000472783_5end |
EntrezGene: | FGGY |
HGNC: | 25610 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.68e-48 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.68e-48 | 42 |
defensive cell | 2.86e-42 | 48 |
phagocyte | 2.86e-42 | 48 |
monopoietic cell | 1.55e-33 | 59 |
monocyte | 1.55e-33 | 59 |
monoblast | 1.55e-33 | 59 |
promonocyte | 1.55e-33 | 59 |
macrophage dendritic cell progenitor | 2.08e-32 | 61 |
myeloid lineage restricted progenitor cell | 6.98e-30 | 66 |
granulocyte monocyte progenitor cell | 2.02e-29 | 67 |
myeloid leukocyte | 2.63e-27 | 72 |
myeloid cell | 8.75e-18 | 108 |
common myeloid progenitor | 8.75e-18 | 108 |
nongranular leukocyte | 1.29e-16 | 115 |
hematopoietic lineage restricted progenitor cell | 7.29e-16 | 120 |
leukocyte | 8.02e-14 | 136 |
hematopoietic oligopotent progenitor cell | 1.96e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.96e-11 | 161 |
hematopoietic stem cell | 6.86e-11 | 168 |
hematopoietic cell | 2.97e-10 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.23e-26 | 76 |
bone element | 7.75e-24 | 82 |
skeletal element | 1.31e-21 | 90 |
immune system | 7.18e-21 | 93 |
hematopoietic system | 9.73e-20 | 98 |
blood island | 9.73e-20 | 98 |
skeletal system | 2.57e-19 | 100 |
hemolymphoid system | 8.75e-18 | 108 |
cranial nerve II | 2.07e-13 | 1 |
cranial nerve | 2.07e-13 | 1 |
nerve trunk | 2.07e-13 | 1 |
nerve connecting eye with brain | 2.07e-13 | 1 |
nerve | 2.07e-13 | 1 |
retinal neural layer | 2.07e-13 | 1 |
presumptive neural retina | 2.07e-13 | 1 |
musculoskeletal system | 5.77e-11 | 167 |
lateral plate mesoderm | 9.99e-09 | 203 |
neural tissue | 2.40e-07 | 2 |
multi cell component structure | 2.40e-07 | 2 |
neuron projection bundle | 2.40e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
papillary adenocarcinoma | 1.10e-13 | 1 |