FFCP PHASE1:Hg19::chr1:26230247..26230298,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3925 | |EntrezGene=3925 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6510 | |HGNC=6510 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=5bp_to_ENST00000485226_5end | |association_with_transcript=5bp_to_ENST00000485226_5end | ||
|cluster_id=chr1:26230247..26230298,- | |||
|coexpression_cluster_id=C3961 | |coexpression_cluster_id=C3961 | ||
|description=CAGE_peak_4_at_STMN1_5end | |description=CAGE_peak_4_at_STMN1_5end | ||
|id=chr1:26230247..26230298,- | |id=chr1:26230247..26230298,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!4.95e-21!235;DOID:14566!1.72e-20!239;DOID:2531!2.13e-12!51;DOID:0060083!2.13e-12!51;DOID:0050686!3.77e-12!137;DOID:1240!3.58e-11!39;DOID:0050687!4.95e-08!143;DOID:8692!5.62e-08!31 | |ontology_enrichment_disease=DOID:162!4.95e-21!235;DOID:14566!1.72e-20!239;DOID:2531!2.13e-12!51;DOID:0060083!2.13e-12!51;DOID:0050686!3.77e-12!137;DOID:1240!3.58e-11!39;DOID:0050687!4.95e-08!143;DOID:8692!5.62e-08!31 | ||
|ontology_enrichment_disease_v019=DOID:1240;4.24e-09;39!DOID:2531;4.74e-09;51!DOID:0060083;4.74e-09;51!DOID:8692;4.51e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:162,8.60e-15,235;DOID:14566,3.95e-14,239;DOID:2531,1.49e-12,51;DOID:0060083,1.49e-12,51;DOID:1240,1.37e-11,39;DOID:0050686,1.42e-08,137;DOID:8692,1.01e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0001017!9.33e-17!82;UBERON:0000073!3.54e-16!94;UBERON:0001016!3.54e-16!94;UBERON:0005743!1.86e-15!86;UBERON:0001049!1.33e-12!57;UBERON:0005068!1.33e-12!57;UBERON:0006241!1.33e-12!57;UBERON:0007135!1.33e-12!57;UBERON:0000955!3.77e-12!69;UBERON:0006238!3.77e-12!69;UBERON:0002780!5.05e-11!41;UBERON:0001890!5.05e-11!41;UBERON:0006240!5.05e-11!41;UBERON:0000924!7.77e-11!173;UBERON:0006601!7.77e-11!173;UBERON:0002020!1.57e-10!34;UBERON:0003528!1.57e-10!34;UBERON:0002616!2.36e-10!59;UBERON:0003080!2.91e-10!42;UBERON:0004121!5.91e-10!169;UBERON:0002346!7.19e-10!90;UBERON:0000956!1.37e-09!25;UBERON:0000203!1.37e-09!25;UBERON:0002791!1.46e-09!33;UBERON:0001893!1.50e-09!34;UBERON:0001869!4.20e-09!32;UBERON:0003075!6.86e-09!86;UBERON:0007284!6.86e-09!86;UBERON:0002619!1.88e-08!22;UBERON:0000153!5.18e-08!129;UBERON:0007811!5.18e-08!129;UBERON:0001950!1.12e-07!20;UBERON:0003056!1.45e-07!61;UBERON:0000033!3.06e-07!123 | |ontology_enrichment_uberon=UBERON:0001017!9.33e-17!82;UBERON:0000073!3.54e-16!94;UBERON:0001016!3.54e-16!94;UBERON:0005743!1.86e-15!86;UBERON:0001049!1.33e-12!57;UBERON:0005068!1.33e-12!57;UBERON:0006241!1.33e-12!57;UBERON:0007135!1.33e-12!57;UBERON:0000955!3.77e-12!69;UBERON:0006238!3.77e-12!69;UBERON:0002780!5.05e-11!41;UBERON:0001890!5.05e-11!41;UBERON:0006240!5.05e-11!41;UBERON:0000924!7.77e-11!173;UBERON:0006601!7.77e-11!173;UBERON:0002020!1.57e-10!34;UBERON:0003528!1.57e-10!34;UBERON:0002616!2.36e-10!59;UBERON:0003080!2.91e-10!42;UBERON:0004121!5.91e-10!169;UBERON:0002346!7.19e-10!90;UBERON:0000956!1.37e-09!25;UBERON:0000203!1.37e-09!25;UBERON:0002791!1.46e-09!33;UBERON:0001893!1.50e-09!34;UBERON:0001869!4.20e-09!32;UBERON:0003075!6.86e-09!86;UBERON:0007284!6.86e-09!86;UBERON:0002619!1.88e-08!22;UBERON:0000153!5.18e-08!129;UBERON:0007811!5.18e-08!129;UBERON:0001950!1.12e-07!20;UBERON:0003056!1.45e-07!61;UBERON:0000033!3.06e-07!123 | ||
|ontology_enrichment_uberon_v019=UBERON:0000956;1.26e-10;25!UBERON:0000203;1.26e-10;25!UBERON:0002619;2.39e-09;22!UBERON:0003528;1.03e-08;34!UBERON:0002020;1.03e-08;34!UBERON:0001950;2.28e-08;20!UBERON:0001869;4.01e-08;32!UBERON:0002791;4.50e-08;32!UBERON:0002780;8.79e-08;41!UBERON:0001890;8.79e-08;41!UBERON:0001893;3.12e-07;34!UBERON:0000955;6.65e-07;68 | |||
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| ||
|short_description=p4@STMN1 | |short_description=p4@STMN1 | ||
}} | }} |
Latest revision as of 04:11, 17 September 2015
Short description: | p4@STMN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_STMN1_5end |
Coexpression cluster: | C3961_duodenum_occipital_Neurons_merkel_mesenchymal_temporal_parietal |
Association with transcript: | 5bp_to_ENST00000485226_5end |
EntrezGene: | STMN1 |
HGNC: | 6510 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.47e-15 | 81 |
nervous system | 1.59e-15 | 89 |
neural tube | 1.70e-11 | 56 |
neural rod | 1.70e-11 | 56 |
future spinal cord | 1.70e-11 | 56 |
neural keel | 1.70e-11 | 56 |
cerebral cortex | 7.15e-11 | 25 |
pallium | 7.15e-11 | 25 |
brain | 1.33e-10 | 68 |
future brain | 1.33e-10 | 68 |
brain grey matter | 2.64e-10 | 34 |
gray matter | 2.64e-10 | 34 |
regional part of forebrain | 4.33e-10 | 41 |
forebrain | 4.33e-10 | 41 |
anterior neural tube | 4.33e-10 | 41 |
future forebrain | 4.33e-10 | 41 |
regional part of nervous system | 5.56e-10 | 53 |
regional part of brain | 5.56e-10 | 53 |
regional part of cerebral cortex | 1.96e-09 | 22 |
regional part of telencephalon | 3.04e-09 | 32 |
neurectoderm | 6.42e-09 | 86 |
telencephalon | 1.00e-08 | 34 |
cerebral hemisphere | 1.20e-08 | 32 |
neocortex | 1.87e-08 | 20 |
ectoderm-derived structure | 3.11e-08 | 171 |
ectoderm | 3.11e-08 | 171 |
presumptive ectoderm | 3.11e-08 | 171 |
neural plate | 4.14e-08 | 82 |
presumptive neural plate | 4.14e-08 | 82 |
ecto-epithelium | 1.15e-07 | 104 |
pre-chordal neural plate | 3.90e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
cancer | 8.60e-15 | 235 |
disease of cellular proliferation | 3.95e-14 | 239 |
hematologic cancer | 1.49e-12 | 51 |
immune system cancer | 1.49e-12 | 51 |
leukemia | 1.37e-11 | 39 |
organ system cancer | 1.42e-08 | 137 |
myeloid leukemia | 1.01e-07 | 31 |