FFCP PHASE1:Hg19::chr19:4400432..4400570,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6455 | |EntrezGene=6455 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10830 | |HGNC=10830 | ||
|TSSclassifier=strong | |||
|UniProt=Q99961,E7EVZ4,B4DRA1,Q6FGM0 | |UniProt=Q99961,E7EVZ4,B4DRA1,Q6FGM0 | ||
|association_with_transcript=0bp_to_ENST00000269886,ENST00000417295,NM_001199943,NM_003025,uc002maj.2,uc002mak.2,uc010xig.1_5end | |association_with_transcript=0bp_to_ENST00000269886,ENST00000417295,NM_001199943,NM_003025,uc002maj.2,uc002mak.2,uc010xig.1_5end | ||
|cluster_id=chr19:4400432..4400570,- | |||
|coexpression_cluster_id=C1220 | |coexpression_cluster_id=C1220 | ||
|description=CAGE_peak_1_at_SH3GL1_5end | |description=CAGE_peak_1_at_SH3GL1_5end | ||
|id=chr19:4400432..4400570,- | |id=chr19:4400432..4400570,- | ||
|ontology_enrichment_celltype=CL:0000222!8.65e-29!119;CL:0000220!2.75e-27!246;CL:0002321!5.57e-27!248;CL:0000055!7.29e-27!180;CL:0002371!1.18e-23!591;CL:0000144!3.02e-23!625;CL:0000183!6.62e-17!59;CL:0002078!3.14e-16!44;CL:0000115!8.16e-16!35;CL:0000680!4.39e-15!57;CL:0000056!4.39e-15!57;CL:0000355!4.39e-15!57;CL:0000548!7.32e-15!679;CL:0000004!7.32e-15!679;CL:0000255!7.32e-15!679;CL:0000012!1.03e-14!682;CL:0000187!2.64e-14!54;CL:0000213!4.74e-13!57;CL:0000215!4.74e-13!57;CL:0000057!6.55e-13!75;CL:0000393!3.95e-12!60;CL:0000211!3.95e-12!60;CL:0002139!2.43e-11!24;CL:0000192!3.98e-11!42;CL:0000514!3.98e-11!42;CL:0000071!2.60e-10!18;CL:0002546!2.60e-10!18;CL:0000359!5.79e-09!32 | |ontology_enrichment_celltype=CL:0000222!8.65e-29!119;CL:0000220!2.75e-27!246;CL:0002321!5.57e-27!248;CL:0000055!7.29e-27!180;CL:0002371!1.18e-23!591;CL:0000144!3.02e-23!625;CL:0000183!6.62e-17!59;CL:0002078!3.14e-16!44;CL:0000115!8.16e-16!35;CL:0000680!4.39e-15!57;CL:0000056!4.39e-15!57;CL:0000355!4.39e-15!57;CL:0000548!7.32e-15!679;CL:0000004!7.32e-15!679;CL:0000255!7.32e-15!679;CL:0000012!1.03e-14!682;CL:0000187!2.64e-14!54;CL:0000213!4.74e-13!57;CL:0000215!4.74e-13!57;CL:0000057!6.55e-13!75;CL:0000393!3.95e-12!60;CL:0000211!3.95e-12!60;CL:0002139!2.43e-11!24;CL:0000192!3.98e-11!42;CL:0000514!3.98e-11!42;CL:0000071!2.60e-10!18;CL:0002546!2.60e-10!18;CL:0000359!5.79e-09!32 | ||
|ontology_enrichment_celltype_v019=CL:0000115;1.03e-13;36!CL:0002139;2.42e-11;24!CL:0002078;2.45e-11;45!CL:0000071;2.59e-10;18!CL:0000187;1.21e-08;55!CL:0000192;1.53e-08;43!CL:0000359;1.74e-08;32!CL:0000213;2.20e-08;58!CL:0000215;2.20e-08;58!CL:0000393;2.26e-07;61!CL:0000211;2.26e-07;61!CL:0000134;2.38e-07;55!CL:0000723;9.83e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,8.12e-30,121;CL:0002321,6.83e-28,250;CL:0002078,9.24e-17,45;CL:0000115,2.34e-16,36;CL:0000680,1.57e-15,58;CL:0000056,1.57e-15,58;CL:0000355,1.57e-15,58;CL:0000187,9.50e-15,55;CL:0000213,1.58e-13,58;CL:0000215,1.58e-13,58;CL:0000057,7.08e-13,76;CL:0000393,1.52e-12,61;CL:0000211,1.52e-12,61;CL:0000192,1.46e-11,43;CL:0000514,1.46e-11,43;CL:0002139,2.43e-11,24;CL:0000071,2.60e-10,18;CL:0002546,2.60e-10,18;CL:0000359,5.79e-09,32 | |||
|ontology_enrichment_development_v019=CL:0002546;2.59e-10;18!CL:0000355;3.01e-09;58!CL:0000222;1.21e-08;121!CL:0000514;1.53e-08;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0004638;2.59e-10;18!UBERON:0001986;2.59e-10;18!UBERON:0004852;2.59e-10;18!UBERON:0007500;4.16e-10;56!UBERON:0001981;4.16e-10;56!UBERON:0004537;4.16e-10;56!UBERON:0000055;8.54e-10;65!UBERON:0003914;1.03e-09;74!UBERON:0002049;1.36e-09;75!UBERON:0007798;1.36e-09;75!UBERON:0006914;1.50e-09;25!UBERON:0001637;2.92e-09;42!UBERON:0003509;2.92e-09;42!UBERON:0004572;2.92e-09;42!UBERON:0000490;4.31e-09;33!UBERON:0000487;4.57e-09;22!UBERON:0004573;8.02e-08;33!UBERON:0004571;8.02e-08;33 | |||
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|short_description=p1@SH3GL1 | |short_description=p1@SH3GL1 | ||
}} | }} |
Latest revision as of 11:06, 18 September 2015
Short description: | p1@SH3GL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SH3GL1_5end |
Coexpression cluster: | C1220_Mesenchymal_Fibroblast_Renal_Alveolar_Trabecular_Smooth_Hepatic |
Association with transcript: | 0bp_to_ENST00000269886, ENST00000417295, NM_001199943, NM_003025, uc002maj.2, uc002mak.2, uc010xig.1_5end |
EntrezGene: | SH3GL1 |
HGNC: | 10830 |
UniProt: | Q99961E7EVZ4B4DRA1Q6FGM0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 8.12e-30 | 121 |
embryonic cell | 6.83e-28 | 250 |
meso-epithelial cell | 9.24e-17 | 45 |
endothelial cell | 2.34e-16 | 36 |
muscle precursor cell | 1.57e-15 | 58 |
myoblast | 1.57e-15 | 58 |
multi-potent skeletal muscle stem cell | 1.57e-15 | 58 |
muscle cell | 9.50e-15 | 55 |
lining cell | 1.58e-13 | 58 |
barrier cell | 1.58e-13 | 58 |
fibroblast | 7.08e-13 | 76 |
electrically responsive cell | 1.52e-12 | 61 |
electrically active cell | 1.52e-12 | 61 |
smooth muscle cell | 1.46e-11 | 43 |
smooth muscle myoblast | 1.46e-11 | 43 |
endothelial cell of vascular tree | 2.43e-11 | 24 |
blood vessel endothelial cell | 2.60e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.60e-10 | 18 |
vascular associated smooth muscle cell | 5.79e-09 | 32 |