FFCP PHASE1:Hg19::chr17:48263174..48263189,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt=P02452 | |UniProt=P02452 | ||
|association_with_transcript=-234bp_to_M32790,M32798_5end | |association_with_transcript=-234bp_to_M32790,M32798_5end | ||
|cluster_id=chr17:48263174..48263189,- | |||
|coexpression_cluster_id=C59 | |coexpression_cluster_id=C59 | ||
|description=CAGE_peak_2_at_COL1A1_5end | |description=CAGE_peak_2_at_COL1A1_5end | ||
|id=chr17:48263174..48263189,- | |id=chr17:48263174..48263189,- | ||
|ontology_enrichment_celltype=CL:0000055!2.31e-40!180;CL:0000057!7.90e-26!75;CL:0000183!6.89e-15!59;CL:0000680!2.13e-14!57;CL:0000056!2.13e-14!57;CL:0000355!2.13e-14!57;CL:0000187!8.41e-14!54;CL:0000393!3.42e-13!60;CL:0000211!3.42e-13!60;CL:0000192!1.46e-10!42;CL:0000514!1.46e-10!42;CL:0002620!6.34e-10!23;CL:0000499!2.10e-08!27;CL:0000144!3.50e-08!625;CL:0002334!4.43e-08!12;CL:0002371!8.31e-08!591;CL:0000222!2.89e-07!119;CL:0000359!3.89e-07!32;CL:0000048!6.11e-07!430 | |ontology_enrichment_celltype=CL:0000055!2.31e-40!180;CL:0000057!7.90e-26!75;CL:0000183!6.89e-15!59;CL:0000680!2.13e-14!57;CL:0000056!2.13e-14!57;CL:0000355!2.13e-14!57;CL:0000187!8.41e-14!54;CL:0000393!3.42e-13!60;CL:0000211!3.42e-13!60;CL:0000192!1.46e-10!42;CL:0000514!1.46e-10!42;CL:0002620!6.34e-10!23;CL:0000499!2.10e-08!27;CL:0000144!3.50e-08!625;CL:0002334!4.43e-08!12;CL:0002371!8.31e-08!591;CL:0000222!2.89e-07!119;CL:0000359!3.89e-07!32;CL:0000048!6.11e-07!430 | ||
|ontology_enrichment_celltype_v019=CL:0000134;4.45e-11;55!CL:0000057;9.16e-11;73!CL:0002620;1.25e-10;23!CL:0000723;2.32e-10;61!CL:0000048;3.91e-10;58!CL:0002320;1.82e-09;188!CL:0000187;4.74e-09;55!CL:0002334;1.18e-08;12!CL:0000192;1.21e-08;43!CL:0000499;4.36e-08;28!CL:0000034;4.64e-08;69!CL:0000393;7.12e-08;61!CL:0000211;7.12e-08;61!CL:0000359;2.70e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.38e-28,76;CL:0000680,5.54e-16,58;CL:0000056,5.54e-16,58;CL:0000355,5.54e-16,58;CL:0000187,2.47e-15,55;CL:0000393,2.11e-14,61;CL:0000211,2.11e-14,61;CL:0000192,8.46e-12,43;CL:0000514,8.46e-12,43;CL:0000048,1.77e-11,427;CL:0002620,1.18e-10,23;CL:0000723,1.21e-10,433;CL:0000034,1.67e-10,441;CL:0002334,1.19e-08,12;CL:0000222,2.73e-08,121;CL:0000499,4.52e-08,28;CL:0000359,1.26e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000355;7.05e-09;58!CL:0000514;1.21e-08;43 | |||
|ontology_enrichment_disease=DOID:2394!7.49e-07!14 | |ontology_enrichment_disease=DOID:2394!7.49e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;5.38e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,5.39e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!2.86e-18!83;UBERON:0002329!2.86e-18!83;UBERON:0003077!2.86e-18!83;UBERON:0003059!2.86e-18!83;UBERON:0007282!2.86e-18!83;UBERON:0009618!2.86e-18!83;UBERON:0007285!2.86e-18!83;UBERON:0004290!7.01e-16!70;UBERON:0005256!4.80e-15!143;UBERON:0001134!7.00e-15!61;UBERON:0002036!7.00e-15!61;UBERON:0003082!7.00e-15!61;UBERON:0000486!7.65e-15!82;UBERON:0002385!8.49e-15!63;UBERON:0001015!8.49e-15!63;UBERON:0000383!8.49e-15!63;UBERON:0002100!7.49e-11!216;UBERON:0000475!1.26e-10!365;UBERON:0003102!4.39e-09!95;UBERON:0000468!1.52e-08!659;UBERON:0002199!1.57e-08!45;UBERON:0002416!1.57e-08!45;UBERON:0003104!3.13e-08!238;UBERON:0009142!3.13e-08!238;UBERON:0000481!6.18e-08!347;UBERON:0004872!1.94e-07!84;UBERON:0001013!4.15e-07!14;UBERON:0002097!5.52e-07!40 | |ontology_enrichment_uberon=UBERON:0000914!2.86e-18!83;UBERON:0002329!2.86e-18!83;UBERON:0003077!2.86e-18!83;UBERON:0003059!2.86e-18!83;UBERON:0007282!2.86e-18!83;UBERON:0009618!2.86e-18!83;UBERON:0007285!2.86e-18!83;UBERON:0004290!7.01e-16!70;UBERON:0005256!4.80e-15!143;UBERON:0001134!7.00e-15!61;UBERON:0002036!7.00e-15!61;UBERON:0003082!7.00e-15!61;UBERON:0000486!7.65e-15!82;UBERON:0002385!8.49e-15!63;UBERON:0001015!8.49e-15!63;UBERON:0000383!8.49e-15!63;UBERON:0002100!7.49e-11!216;UBERON:0000475!1.26e-10!365;UBERON:0003102!4.39e-09!95;UBERON:0000468!1.52e-08!659;UBERON:0002199!1.57e-08!45;UBERON:0002416!1.57e-08!45;UBERON:0003104!3.13e-08!238;UBERON:0009142!3.13e-08!238;UBERON:0000481!6.18e-08!347;UBERON:0004872!1.94e-07!84;UBERON:0001013!4.15e-07!14;UBERON:0002097!5.52e-07!40 | ||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.69e-09;198!UBERON:0001013;1.51e-07;14!UBERON:0002385;2.45e-07;31!UBERON:0001015;2.45e-07;31!UBERON:0000383;2.45e-07;31!UBERON:0002199;8.27e-07;46!UBERON:0002416;8.27e-07;46 | |||
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|short_description=p2@COL1A1 | |short_description=p2@COL1A1 | ||
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Latest revision as of 23:41, 15 September 2015
Short description: | p2@COL1A1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -234bp_to_M32790, M32798_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | P02452 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.38e-28 | 76 |
muscle precursor cell | 5.54e-16 | 58 |
myoblast | 5.54e-16 | 58 |
multi-potent skeletal muscle stem cell | 5.54e-16 | 58 |
muscle cell | 2.47e-15 | 55 |
electrically responsive cell | 2.11e-14 | 61 |
electrically active cell | 2.11e-14 | 61 |
smooth muscle cell | 8.46e-12 | 43 |
smooth muscle myoblast | 8.46e-12 | 43 |
multi fate stem cell | 1.77e-11 | 427 |
skin fibroblast | 1.18e-10 | 23 |
somatic stem cell | 1.21e-10 | 433 |
stem cell | 1.67e-10 | 441 |
preadipocyte | 1.19e-08 | 12 |
mesodermal cell | 2.73e-08 | 121 |
stromal cell | 4.52e-08 | 28 |
vascular associated smooth muscle cell | 1.26e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 3.11e-17 | 78 |
somite | 7.76e-17 | 71 |
presomitic mesoderm | 7.76e-17 | 71 |
presumptive segmental plate | 7.76e-17 | 71 |
dermomyotome | 7.76e-17 | 71 |
trunk paraxial mesoderm | 7.76e-17 | 71 |
dense mesenchyme tissue | 8.65e-17 | 73 |
paraxial mesoderm | 3.01e-16 | 72 |
presumptive paraxial mesoderm | 3.01e-16 | 72 |
skeletal muscle tissue | 9.87e-16 | 62 |
striated muscle tissue | 9.87e-16 | 62 |
myotome | 9.87e-16 | 62 |
muscle tissue | 1.19e-15 | 64 |
musculature | 1.19e-15 | 64 |
musculature of body | 1.19e-15 | 64 |
mesenchyme | 9.93e-14 | 160 |
entire embryonic mesenchyme | 9.93e-14 | 160 |
trunk mesenchyme | 1.75e-13 | 122 |
multilaminar epithelium | 1.85e-13 | 83 |
integument | 6.34e-10 | 46 |
integumental system | 6.34e-10 | 46 |
surface structure | 1.53e-08 | 99 |
trunk | 2.32e-08 | 199 |
skin of body | 3.31e-08 | 41 |
splanchnic layer of lateral plate mesoderm | 1.11e-07 | 83 |
adipose tissue | 1.35e-07 | 14 |
unilaminar epithelium | 2.53e-07 | 148 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 5.39e-07 | 14 |