FFCP PHASE1:Hg19::chr15:89178857..89178898,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3669 | |EntrezGene=3669 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6130 | |HGNC=6130 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-5bp_to_uc002bmu.1_5end | |association_with_transcript=-5bp_to_uc002bmu.1_5end | ||
|cluster_id=chr15:89178857..89178898,+ | |||
|coexpression_cluster_id=C272 | |coexpression_cluster_id=C272 | ||
|description=CAGE_peak_3_at_ISG20_5end | |description=CAGE_peak_3_at_ISG20_5end | ||
|id=chr15:89178857..89178898,+ | |id=chr15:89178857..89178898,+ | ||
|ontology_enrichment_celltype=CL:0000542!2.15e-41!53;CL:0000051!2.15e-41!53;CL:0000838!1.58e-40!52;CL:0000738!5.72e-24!140;CL:0002087!1.19e-22!119;CL:0000791!2.40e-21!18;CL:0000789!2.40e-21!18;CL:0002420!2.40e-21!18;CL:0002419!2.40e-21!18;CL:0000790!2.40e-21!18;CL:0000945!3.88e-20!24;CL:0000826!3.88e-20!24;CL:0000084!2.36e-18!25;CL:0000827!2.36e-18!25;CL:0002031!8.39e-18!124;CL:0000037!5.51e-16!172;CL:0000566!5.51e-16!172;CL:0000236!5.53e-15!14;CL:0000988!6.37e-14!182;CL:0000625!9.20e-14!11;CL:0002032!2.01e-12!165;CL:0000837!2.01e-12!165;CL:0000624!2.47e-08!6 | |ontology_enrichment_celltype=CL:0000542!2.15e-41!53;CL:0000051!2.15e-41!53;CL:0000838!1.58e-40!52;CL:0000738!5.72e-24!140;CL:0002087!1.19e-22!119;CL:0000791!2.40e-21!18;CL:0000789!2.40e-21!18;CL:0002420!2.40e-21!18;CL:0002419!2.40e-21!18;CL:0000790!2.40e-21!18;CL:0000945!3.88e-20!24;CL:0000826!3.88e-20!24;CL:0000084!2.36e-18!25;CL:0000827!2.36e-18!25;CL:0002031!8.39e-18!124;CL:0000037!5.51e-16!172;CL:0000566!5.51e-16!172;CL:0000236!5.53e-15!14;CL:0000988!6.37e-14!182;CL:0000625!9.20e-14!11;CL:0002032!2.01e-12!165;CL:0000837!2.01e-12!165;CL:0000624!2.47e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.68e-34;18!CL:0000789;3.68e-34;18!CL:0002419;3.68e-34;18!CL:0000542;1.90e-30;53!CL:0000084;1.12e-25;25!CL:0000236;1.25e-22;13!CL:0000625;1.20e-21;11!CL:0000945;1.20e-20;24!CL:0000624;1.06e-12;6!CL:0002087;6.99e-11;104!CL:0000898;1.05e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.19e-51,53;CL:0000051,1.19e-51,53;CL:0000838,2.87e-50,52;CL:0000791,3.62e-34,18;CL:0000789,3.62e-34,18;CL:0002420,3.62e-34,18;CL:0002419,3.62e-34,18;CL:0000790,3.62e-34,18;CL:0000738,2.52e-31,136;CL:0002087,1.46e-30,115;CL:0000084,1.12e-25,25;CL:0000827,1.12e-25,25;CL:0000236,5.00e-24,14;CL:0002031,2.48e-23,120;CL:0000037,2.47e-22,168;CL:0000625,1.21e-21,11;CL:0000945,1.01e-20,24;CL:0000826,1.01e-20,24;CL:0000988,2.09e-20,177;CL:0002032,1.21e-17,161;CL:0000837,1.21e-17,161;CL:0000624,1.05e-12,6;CL:0000898,1.05e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;3.68e-34;18!CL:0000051;1.90e-30;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.89e-20!115;UBERON:0000178!1.70e-10!15;UBERON:0000179!1.70e-10!15;UBERON:0000463!1.70e-10!15;UBERON:0004177!3.56e-08!7 | |ontology_enrichment_uberon=UBERON:0007023!1.89e-20!115;UBERON:0000178!1.70e-10!15;UBERON:0000179!1.70e-10!15;UBERON:0000463!1.70e-10!15;UBERON:0004177!3.56e-08!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.00e-17;15!UBERON:0000179;4.00e-17;15!UBERON:0000463;4.00e-17;15!UBERON:0002390;3.49e-11;32!UBERON:0002193;9.30e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.80e-17,15;UBERON:0000179,3.80e-17,15;UBERON:0000463,3.80e-17,15;UBERON:0004177,6.21e-10,7;UBERON:0005057,6.21e-10,7;UBERON:0002370,1.23e-08,4;UBERON:0005058,1.23e-08,4;UBERON:0009113,1.23e-08,4;UBERON:0003295,1.23e-08,4;UBERON:0005562,1.23e-08,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.328402357799783,0.236132343941038,5.90046415273356,7.29275856384704,3.40595471295367,0,0,0,2.32401601740905,1.84820002233648,0.880801318004542,1.66198622559563,2.20598892217156,3.25516306073778,1.34349284543955,6.80176698639857,2.06060454107349,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0,1.10483290796269,0.949387162322653,0,0,0,0,0,0.16072558669708,0,0,0.182664153764634,68.6385353399158,95.574256970873,87.1719068786284,77.6649005071043,110.509292421939,79.8905891536732,75.3591154974743,86.8188916627181,52.3675931580693,20.5533016279829,21.789574003138,2.64342657158052,2.24203425192614,2.37045676297569,19.6709770113833,9.82526906872912,16.0369169219617,35.1091640320424,112.117259721955,123.569877296765,77.9306913631645,14.2605384813022,72.47305323881,68.8970412155062,56.3272036631232,11.0158534964081,15.6071217071854,9.37296056240954,14.0938509070783,18.8372005727784,66.5806668597651,81.3324117392728,58.539893330787,13.3705024383128,62.4649404571132,62.196567632356,39.2180522630229,70.4029565656254,62.5040115702162,47.5226022224187,48.7863385811984,48.1229657940613,29.983374372563,48.5393366690235,41.0563998460523,12.7012248231581,5.08136371988664,18.1030504853499,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.327447688744282,0,0,0,0.174129737299267,0,2.14641561874808,6.29194401858141,4.08603251462521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302714855289863,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,7.94633578946371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14382394926518,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36255431980582,11.2307533315099,6.90008239550455,10.5241289749394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.6466897241106,11.4328526433867,8.96511485548932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,23.850037633912,16.0573813499899,19.3680043639215,23.5849457703211,22.2135627466545,14.9148861574325,11.3406601820004,23.7937552888281,0,0,0,2.04383492638291,0,6.33162405800886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0.334330152832435,0,0,0,0,0,0.281338832821026,0,0,0,0.19924798825107,6.63081397274754,0.251932747854276,0,1.84627208191604,0,0,0,0,2.46608514092334,28.7379710816328,0,0,0,0,0,0,0.724999575434793,0.1137934482855,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0.307801034015188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.97157158647103,1.06149077404007,3.66618086960175,0,0,0,0.067401132980677,0,0,3.28418620588199,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0.34945333648406,0,0,0,0,0.775912131907355,0,0.225980740780532,0,0,0,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.199679000498991,0.429226048136571,0,0.268733889946905,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0.2249738915515,0,0,0,0.551639951094387,0.472091293214983,0,0.35857467866569,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,1.81538601365081,0.471612915298998,1.24271716604159,17.8619767852302,1.18566979138767,1.70509637733254,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0.573409195690071,0.110929051536852,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414706207840855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0.194860308839388,0.265729680626726,0,0,0,0,0.39997479170986,0,0.861074898304078,0,0,0,0,0,0,0,0,0,0.637724760305049,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0.11796972334774,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,1.09651553371436,0.496211178389294,0,0,0.535701835878287,0,0,0.455324382702595,0.177404740325278,3.22655165156182,0,0.0679697329768317,0.0657727735628491,0,0,0.235479278551542,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,1.389134845943,0,0,0.245148321753905,0,0,0.297046400327086,0,0,8.55253653616668,9.21747798022154,0.199882311849858,0,0,0,0.730336388246517,3.21110498383179,0.286679166302903,0,0,0,2.645134202577,0,0,0,0,0,0,0,0,0,0,0.378893491091197,0,0,0,0.852935927603924,0.714193294391221,20.797628967194,32.775449148213,0,0.318235791390825,0.202117188958219,0.435433495793923,0.342233301085281,10.3722161642465,1.14755528628282,0,0,0,0,0,0,0,0.406896178315738,0,16.1019034872821,0.961705476909699 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.328402357799783,0.236132343941038,5.90046415273356,7.29275856384704,3.40595471295367,0,0,0,2.32401601740905,1.84820002233648,0.880801318004542,1.66198622559563,2.20598892217156,3.25516306073778,1.34349284543955,6.80176698639857,2.06060454107349,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0,1.10483290796269,0.949387162322653,0,0,0,0,0,0.16072558669708,0,0,0.182664153764634,68.6385353399158,95.574256970873,87.1719068786284,77.6649005071043,110.509292421939,79.8905891536732,75.3591154974743,86.8188916627181,52.3675931580693,20.5533016279829,21.789574003138,2.64342657158052,2.24203425192614,2.37045676297569,19.6709770113833,9.82526906872912,16.0369169219617,35.1091640320424,112.117259721955,123.569877296765,77.9306913631645,14.2605384813022,72.47305323881,68.8970412155062,56.3272036631232,11.0158534964081,15.6071217071854,9.37296056240954,14.0938509070783,18.8372005727784,66.5806668597651,81.3324117392728,58.539893330787,13.3705024383128,62.4649404571132,62.196567632356,39.2180522630229,70.4029565656254,62.5040115702162,47.5226022224187,48.7863385811984,48.1229657940613,29.983374372563,48.5393366690235,41.0563998460523,12.7012248231581,5.08136371988664,18.1030504853499,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.327447688744282,0,0,0,0.174129737299267,0,2.14641561874808,6.29194401858141,4.08603251462521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302714855289863,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,7.94633578946371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14382394926518,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36255431980582,11.2307533315099,6.90008239550455,10.5241289749394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.6466897241106,11.4328526433867,8.96511485548932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,23.850037633912,16.0573813499899,19.3680043639215,23.5849457703211,22.2135627466545,14.9148861574325,11.3406601820004,23.7937552888281,0,0,0,2.04383492638291,0,6.33162405800886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0.334330152832435,0,0,0,0,0,0.281338832821026,0,0,0,0.19924798825107,6.63081397274754,0.251932747854276,0,1.84627208191604,0,0,0,0,2.46608514092334,28.7379710816328,0,0,0,0,0,0,0.724999575434793,0.1137934482855,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0.307801034015188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.97157158647103,1.06149077404007,3.66618086960175,0,0,0,0.067401132980677,0,0,3.28418620588199,0,0,0,0,0,0.189559738885464,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0.34945333648406,0,0,0,0,0.775912131907355,0,0.225980740780532,0,0,0,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.199679000498991,0.429226048136571,0,0.268733889946905,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0.2249738915515,0,0,0,0.551639951094387,0.472091293214983,0,0.35857467866569,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,1.81538601365081,0.471612915298998,1.24271716604159,17.8619767852302,1.18566979138767,1.70509637733254,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0.573409195690071,0.110929051536852,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414706207840855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0.194860308839388,0.265729680626726,0,0,0,0,0.39997479170986,0,0.861074898304078,0,0,0,0,0,0,0,0,0,0.637724760305049,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0.11796972334774,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,0,1.09651553371436,0.496211178389294,0,0,0.535701835878287,0,0,0.455324382702595,0.177404740325278,3.22655165156182,0,0.0679697329768317,0.0657727735628491,0,0,0.235479278551542,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,1.389134845943,0,0,0.245148321753905,0,0,0.297046400327086,0,0,8.55253653616668,9.21747798022154,0.199882311849858,0,0,0,0.730336388246517,3.21110498383179,0.286679166302903,0,0,0,2.645134202577,0,0,0,0,0,0,0,0,0,0,0.378893491091197,0,0,0,0.852935927603924,0.714193294391221,20.797628967194,32.775449148213,0,0.318235791390825,0.202117188958219,0.435433495793923,0.342233301085281,10.3722161642465,1.14755528628282,0,0,0,0,0,0,0,0.406896178315738,0,16.1019034872821,0.961705476909699 | ||
|short_description=p3@ISG20 | |short_description=p3@ISG20 | ||
}} | }} |
Latest revision as of 15:32, 19 September 2015
Short description: | p3@ISG20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ISG20_5end |
Coexpression cluster: | C272_CD19_CD4_CD8_Whole_Peripheral_lymph_tonsil |
Association with transcript: | -5bp_to_uc002bmu.1_5end |
EntrezGene: | ISG20 |
HGNC: | 6130 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.19e-51 | 53 |
common lymphoid progenitor | 1.19e-51 | 53 |
lymphoid lineage restricted progenitor cell | 2.87e-50 | 52 |
mature alpha-beta T cell | 3.62e-34 | 18 |
alpha-beta T cell | 3.62e-34 | 18 |
immature T cell | 3.62e-34 | 18 |
mature T cell | 3.62e-34 | 18 |
immature alpha-beta T cell | 3.62e-34 | 18 |
leukocyte | 2.52e-31 | 136 |
nongranular leukocyte | 1.46e-30 | 115 |
T cell | 1.12e-25 | 25 |
pro-T cell | 1.12e-25 | 25 |
B cell | 5.00e-24 | 14 |
hematopoietic lineage restricted progenitor cell | 2.48e-23 | 120 |
hematopoietic stem cell | 2.47e-22 | 168 |
CD8-positive, alpha-beta T cell | 1.21e-21 | 11 |
lymphocyte of B lineage | 1.01e-20 | 24 |
pro-B cell | 1.01e-20 | 24 |
hematopoietic cell | 2.09e-20 | 177 |
hematopoietic oligopotent progenitor cell | 1.21e-17 | 161 |
hematopoietic multipotent progenitor cell | 1.21e-17 | 161 |
CD4-positive, alpha-beta T cell | 1.05e-12 | 6 |
naive T cell | 1.05e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 3.80e-17 | 15 |
haemolymphatic fluid | 3.80e-17 | 15 |
organism substance | 3.80e-17 | 15 |
hemopoietic organ | 6.21e-10 | 7 |
immune organ | 6.21e-10 | 7 |
thymus | 1.23e-08 | 4 |
hemolymphoid system gland | 1.23e-08 | 4 |
thymic region | 1.23e-08 | 4 |
pharyngeal gland | 1.23e-08 | 4 |
thymus primordium | 1.23e-08 | 4 |