FFCP PHASE1:Hg19::chr13:36052713..36052724,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:36052713..36052724,- | |||
|coexpression_cluster_id=C369 | |coexpression_cluster_id=C369 | ||
|description=CAGE_peak_at_chr13:36052713..36052724,- | |description=CAGE_peak_at_chr13:36052713..36052724,- | ||
|id=chr13:36052713..36052724,- | |id=chr13:36052713..36052724,- | ||
|ontology_enrichment_celltype=CL:0000064!9.13e-22!3;CL:0005012!9.13e-22!3;CL:0000067!9.13e-22!3;CL:0002304!9.13e-22!3;CL:0000075!4.57e-15!27;CL:0000710!9.67e-12!20;CL:0000197!1.99e-10!6;CL:0000098!1.99e-10!6;CL:0002167!1.99e-10!6;CL:0002586!5.24e-10!3;CL:0000133!3.26e-09!59;CL:0000342!2.35e-08!1;CL:0002565!2.35e-08!1;CL:0002574!5.05e-08!1;CL:0000306!6.42e-08!4;CL:0002222!6.42e-08!4;CL:0002224!6.42e-08!4;CL:0000149!1.03e-07!4;CL:0000221!1.99e-07!71;CL:0002077!6.71e-07!33 | |ontology_enrichment_celltype=CL:0000064!9.13e-22!3;CL:0005012!9.13e-22!3;CL:0000067!9.13e-22!3;CL:0002304!9.13e-22!3;CL:0000075!4.57e-15!27;CL:0000710!9.67e-12!20;CL:0000197!1.99e-10!6;CL:0000098!1.99e-10!6;CL:0002167!1.99e-10!6;CL:0002586!5.24e-10!3;CL:0000133!3.26e-09!59;CL:0000342!2.35e-08!1;CL:0002565!2.35e-08!1;CL:0002574!5.05e-08!1;CL:0000306!6.42e-08!4;CL:0002222!6.42e-08!4;CL:0002224!6.42e-08!4;CL:0000149!1.03e-07!4;CL:0000221!1.99e-07!71;CL:0002077!6.71e-07!33 | ||
|ontology_enrichment_celltype_v019=CL:0000064;1.52e-87;3!CL:0000067;1.52e-87;3!CL:0005012;1.52e-87;3!CL:0002304;1.52e-87;3!CL:0000075;5.98e-23;27!CL:0000306;7.35e-18;4!CL:0002222;7.35e-18;4!CL:0002224;7.35e-18;4!CL:0000710;2.76e-14;20!CL:0002077;2.91e-09;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,1.52e-87,3;CL:0000067,1.52e-87,3;CL:0005012,1.52e-87,3;CL:0002304,1.52e-87,3;CL:0000075,5.98e-23,27;CL:0000306,7.35e-18,4;CL:0002222,7.35e-18,4;CL:0002224,7.35e-18,4;CL:0000710,2.76e-14,20;CL:0002077,7.08e-09,34 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:169!2.42e-10!6 | |ontology_enrichment_disease=DOID:169!2.42e-10!6 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007625!3.11e-39!11;UBERON:0000970!5.34e-33!20;UBERON:0002104!2.40e-31!21;UBERON:0000020!1.80e-28!23;UBERON:0000488!2.30e-28!4;UBERON:0000019!3.46e-28!19;UBERON:0000047!3.46e-28!19;UBERON:0004088!3.46e-28!19;UBERON:0003072!3.46e-28!19;UBERON:0003071!3.46e-28!19;UBERON:0004128!3.46e-28!19;UBERON:0001032!3.25e-27!24;UBERON:0004456!3.25e-27!24;UBERON:0001456!2.29e-25!21;UBERON:0001778!9.13e-22!3;UBERON:0001775!9.13e-22!3;UBERON:0002203!5.48e-19!6;UBERON:0001768!5.48e-19!6;UBERON:0005085!5.69e-18!29;UBERON:0001801!1.55e-17!14;UBERON:0000966!5.79e-13!5;UBERON:0005388!5.79e-13!5;UBERON:0001802!5.79e-13!5;UBERON:0001444!1.07e-12!48;UBERON:0003075!1.73e-12!86;UBERON:0007284!1.73e-12!86;UBERON:0000013!2.64e-12!5;UBERON:0002410!2.64e-12!5;UBERON:0002346!8.04e-12!90;UBERON:0003056!2.39e-11!61;UBERON:0000033!1.31e-10!123;UBERON:0002200!2.01e-10!11;UBERON:0006876!2.01e-10!11;UBERON:0004121!2.79e-10!169;UBERON:0001781!5.24e-10!3;UBERON:0001782!5.24e-10!3;UBERON:0005424!5.24e-10!3;UBERON:0000153!5.58e-10!129;UBERON:0007811!5.58e-10!129;UBERON:0000924!5.81e-10!173;UBERON:0006601!5.81e-10!173;UBERON:0000063!2.14e-09!97;UBERON:0002506!2.35e-08!1;UBERON:0001769!2.35e-08!1;UBERON:0000989!3.83e-08!1;UBERON:0008811!3.83e-08!1;UBERON:0006258!3.83e-08!1;UBERON:0005876!3.83e-08!1;UBERON:0004874!3.83e-08!1;UBERON:0001736!4.11e-08!1;UBERON:0006298!4.11e-08!1;UBERON:0010077!6.42e-08!4;UBERON:0005389!6.42e-08!4;UBERON:0000484!6.42e-08!4;UBERON:0002546!6.42e-08!4;UBERON:0000965!6.42e-08!4;UBERON:0001803!6.42e-08!4;UBERON:0003073!6.42e-08!4;UBERON:0005426!6.42e-08!4;UBERON:0002902!1.21e-07!1;UBERON:0009899!1.21e-07!1;UBERON:0000073!1.58e-07!94;UBERON:0001016!1.58e-07!94;UBERON:0002680!4.43e-07!9;UBERON:0001895!4.43e-07!9;UBERON:0010092!4.43e-07!9;UBERON:0000010!4.72e-07!8 | |ontology_enrichment_uberon=UBERON:0007625!3.11e-39!11;UBERON:0000970!5.34e-33!20;UBERON:0002104!2.40e-31!21;UBERON:0000020!1.80e-28!23;UBERON:0000488!2.30e-28!4;UBERON:0000019!3.46e-28!19;UBERON:0000047!3.46e-28!19;UBERON:0004088!3.46e-28!19;UBERON:0003072!3.46e-28!19;UBERON:0003071!3.46e-28!19;UBERON:0004128!3.46e-28!19;UBERON:0001032!3.25e-27!24;UBERON:0004456!3.25e-27!24;UBERON:0001456!2.29e-25!21;UBERON:0001778!9.13e-22!3;UBERON:0001775!9.13e-22!3;UBERON:0002203!5.48e-19!6;UBERON:0001768!5.48e-19!6;UBERON:0005085!5.69e-18!29;UBERON:0001801!1.55e-17!14;UBERON:0000966!5.79e-13!5;UBERON:0005388!5.79e-13!5;UBERON:0001802!5.79e-13!5;UBERON:0001444!1.07e-12!48;UBERON:0003075!1.73e-12!86;UBERON:0007284!1.73e-12!86;UBERON:0000013!2.64e-12!5;UBERON:0002410!2.64e-12!5;UBERON:0002346!8.04e-12!90;UBERON:0003056!2.39e-11!61;UBERON:0000033!1.31e-10!123;UBERON:0002200!2.01e-10!11;UBERON:0006876!2.01e-10!11;UBERON:0004121!2.79e-10!169;UBERON:0001781!5.24e-10!3;UBERON:0001782!5.24e-10!3;UBERON:0005424!5.24e-10!3;UBERON:0000153!5.58e-10!129;UBERON:0007811!5.58e-10!129;UBERON:0000924!5.81e-10!173;UBERON:0006601!5.81e-10!173;UBERON:0000063!2.14e-09!97;UBERON:0002506!2.35e-08!1;UBERON:0001769!2.35e-08!1;UBERON:0000989!3.83e-08!1;UBERON:0008811!3.83e-08!1;UBERON:0006258!3.83e-08!1;UBERON:0005876!3.83e-08!1;UBERON:0004874!3.83e-08!1;UBERON:0001736!4.11e-08!1;UBERON:0006298!4.11e-08!1;UBERON:0010077!6.42e-08!4;UBERON:0005389!6.42e-08!4;UBERON:0000484!6.42e-08!4;UBERON:0002546!6.42e-08!4;UBERON:0000965!6.42e-08!4;UBERON:0001803!6.42e-08!4;UBERON:0003073!6.42e-08!4;UBERON:0005426!6.42e-08!4;UBERON:0002902!1.21e-07!1;UBERON:0009899!1.21e-07!1;UBERON:0000073!1.58e-07!94;UBERON:0001016!1.58e-07!94;UBERON:0002680!4.43e-07!9;UBERON:0001895!4.43e-07!9;UBERON:0010092!4.43e-07!9;UBERON:0000010!4.72e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0001778;1.52e-87;3!UBERON:0001775;1.52e-87;3!UBERON:0000488;4.67e-66;4!UBERON:0007625;2.16e-54;11!UBERON:0002203;1.52e-44;6!UBERON:0001768;1.52e-44;6!UBERON:0002200;1.52e-44;6!UBERON:0001801;4.85e-43;14!UBERON:0000019;4.52e-32;19!UBERON:0000047;4.52e-32;19!UBERON:0004088;4.52e-32;19!UBERON:0010230;4.52e-32;19!UBERON:0000970;1.56e-30;20!UBERON:0002104;3.84e-29;21!UBERON:0001456;3.84e-29;21!UBERON:0000020;1.01e-26;23!UBERON:0001032;1.16e-25;24!UBERON:0004456;1.16e-25;24!UBERON:0006876;6.20e-25;11!UBERON:0010371;8.88e-21;31!UBERON:0010077;7.35e-18;4!UBERON:0005389;7.35e-18;4!UBERON:0000484;7.35e-18;4!UBERON:0000965;7.35e-18;4!UBERON:0001803;7.35e-18;4!UBERON:0001444;1.92e-11;48!UBERON:0000033;3.65e-11;50!UBERON:0000153;3.67e-08;54!UBERON:0007811;6.07e-08;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,1.52e-87,3;UBERON:0001775,1.52e-87,3;UBERON:0000488,4.67e-66,4;UBERON:0007625,2.16e-54,11;UBERON:0002203,1.52e-44,6;UBERON:0001768,1.52e-44,6;UBERON:0002200,1.52e-44,6;UBERON:0001801,4.85e-43,14;UBERON:0000019,1.56e-30,20;UBERON:0000047,1.56e-30,20;UBERON:0010312,1.56e-30,20;UBERON:0004088,1.56e-30,20;UBERON:0010230,1.56e-30,20;UBERON:0003072,1.56e-30,20;UBERON:0004128,1.56e-30,20;UBERON:0003071,1.56e-30,20;UBERON:0000970,3.84e-29,21;UBERON:0002104,3.84e-29,21;UBERON:0001456,7.08e-28,22;UBERON:0000020,1.16e-25,24;UBERON:0001032,1.16e-25,24;UBERON:0004456,1.16e-25,24;UBERON:0006876,6.20e-25,11;UBERON:0005085,3.79e-20,31;UBERON:0010077,7.35e-18,4;UBERON:0005389,7.35e-18,4;UBERON:0000484,7.35e-18,4;UBERON:0002546,7.35e-18,4;UBERON:0000965,7.35e-18,4;UBERON:0001803,7.35e-18,4;UBERON:0003073,7.35e-18,4;UBERON:0005426,7.35e-18,4;UBERON:0001444,3.57e-13,49;UBERON:0000033,1.15e-11,56;UBERON:0000153,1.22e-10,62;UBERON:0007811,1.22e-10,62;UBERON:0003056,1.22e-10,61;UBERON:0000076,1.24e-09,8;UBERON:0003075,3.31e-08,82;UBERON:0007284,3.31e-08,82;UBERON:0002346,7.10e-08,86 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.06499713805492,0.665188192387692,2.45937399940753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686271241194102,0,0,0,0,0,0,0,5.10093781890338,0.587043471179108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0.157702415033935,0.35142424497814,0,0,0,0,0,0.347534457872331,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0.650756789328606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0.591095237907095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677942222341597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0.852548188666271,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255788742607303,0.323474434190045,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857718530119876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.06499713805492,0.665188192387692,2.45937399940753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686271241194102,0,0,0,0,0,0,0,5.10093781890338,0.587043471179108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0.157702415033935,0.35142424497814,0,0,0,0,0,0.347534457872331,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0.650756789328606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0.591095237907095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677942222341597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0.852548188666271,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255788742607303,0.323474434190045,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857718530119876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr13:36052713..36052724,- | |short_description=p@chr13:36052713..36052724,- | ||
}} | }} |
Latest revision as of 15:46, 24 July 2015
Short description: | p@chr13:36052713..36052724, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:36052713..36052724, - |
Coexpression cluster: | C369_Lens_eye_Ciliary_retina_H9_Retinal_Renal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 1.52e-87 | 3 |
ciliated epithelial cell | 1.52e-87 | 3 |
multi-ciliated epithelial cell | 1.52e-87 | 3 |
non-pigmented ciliary epithelial cell | 1.52e-87 | 3 |
columnar/cuboidal epithelial cell | 5.98e-23 | 27 |
crystallin accumulating cell | 7.35e-18 | 4 |
vertebrate lens cell | 7.35e-18 | 4 |
lens epithelial cell | 7.35e-18 | 4 |
neurecto-epithelial cell | 2.76e-14 | 20 |
ecto-epithelial cell | 7.08e-09 | 34 |