FFCP PHASE1:Hg19::chr13:112721521..112721535,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6656 | |EntrezGene=6656 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11189 | |HGNC=11189 | ||
|TSSclassifier=strong | |||
|UniProt=O00570 | |UniProt=O00570 | ||
|association_with_transcript=-377bp_to_ENST00000330949,NM_005986,uc001vsb.1_5end | |association_with_transcript=-377bp_to_ENST00000330949,NM_005986,uc001vsb.1_5end | ||
|cluster_id=chr13:112721521..112721535,+ | |||
|coexpression_cluster_id=C152 | |coexpression_cluster_id=C152 | ||
|description=CAGE_peak_3_at_SOX1_5end | |description=CAGE_peak_3_at_SOX1_5end | ||
|id=chr13:112721521..112721535,+ | |id=chr13:112721521..112721535,+ | ||
|ontology_enrichment_celltype=CL:0000047!1.42e-08!8 | |ontology_enrichment_celltype=CL:0000047!1.42e-08!8 | ||
|ontology_enrichment_celltype_v019=CL:0000047;3.96e-66;2!CL:0000123;9.07e-18;2!CL:0000242;9.07e-18;2!CL:0002319;9.62e-12;25!CL:0000312;6.55e-08;5!CL:0000240;8.48e-07;6!CL:0000311;8.48e-07;6!CL:0000079;8.48e-07;6!CL:0000237;8.48e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,6.48e-18,2;CL:0000047,2.01e-17,8;CL:0002319,9.28e-12,25;CL:0000312,5.73e-08,5;CL:0000240,7.58e-07,6;CL:0000311,7.58e-07,6;CL:0000079,7.58e-07,6;CL:0000237,7.58e-07,6;CL:0000036,7.58e-07,6;CL:0000357,7.58e-07,6;CL:0000114,7.58e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000357;8.48e-07;6!CL:0000114;8.48e-07;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:171;2.84e-14;10!DOID:3095;5.09e-07;22!DOID:2994;5.09e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,3.25e-14,10;DOID:3095,5.40e-07,22;DOID:2994,5.40e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0005743!9.70e-51!86;UBERON:0001049!1.01e-50!57;UBERON:0005068!1.01e-50!57;UBERON:0006241!1.01e-50!57;UBERON:0007135!1.01e-50!57;UBERON:0001017!2.14e-50!82;UBERON:0002346!1.15e-45!90;UBERON:0002616!2.63e-45!59;UBERON:0000073!3.00e-45!94;UBERON:0001016!3.00e-45!94;UBERON:0000955!2.45e-40!69;UBERON:0006238!2.45e-40!69;UBERON:0003075!4.55e-39!86;UBERON:0007284!4.55e-39!86;UBERON:0001893!8.56e-37!34;UBERON:0002020!1.31e-36!34;UBERON:0003528!1.31e-36!34;UBERON:0002791!7.16e-34!33;UBERON:0002780!2.97e-33!41;UBERON:0001890!2.97e-33!41;UBERON:0006240!2.97e-33!41;UBERON:0003080!2.31e-32!42;UBERON:0001869!2.74e-31!32;UBERON:0000924!1.48e-29!173;UBERON:0006601!1.48e-29!173;UBERON:0003056!1.07e-25!61;UBERON:0001950!2.50e-25!20;UBERON:0004121!4.57e-25!169;UBERON:0000033!3.34e-23!123;UBERON:0002619!6.80e-23!22;UBERON:0000153!8.46e-22!129;UBERON:0007811!8.46e-22!129;UBERON:0002308!2.15e-20!9;UBERON:0000125!2.15e-20!9;UBERON:0007023!3.52e-20!115;UBERON:0000956!6.05e-20!25;UBERON:0000203!6.05e-20!25;UBERON:0004733!7.29e-20!12;UBERON:0002028!7.29e-20!12;UBERON:0007277!7.29e-20!12;UBERON:0003076!1.16e-19!15;UBERON:0003057!1.16e-19!15;UBERON:0004732!3.09e-18!13;UBERON:0002298!4.37e-17!8;UBERON:0002420!4.81e-15!9;UBERON:0007245!4.81e-15!9;UBERON:0010009!4.81e-15!9;UBERON:0010011!4.81e-15!9;UBERON:0000454!4.81e-15!9;UBERON:0002680!5.19e-15!9;UBERON:0001895!5.19e-15!9;UBERON:0010092!5.19e-15!9;UBERON:0009663!7.31e-14!7;UBERON:0001871!2.90e-12!7;UBERON:0006331!4.19e-12!3;UBERON:0000988!5.71e-12!3;UBERON:0000025!3.58e-11!194;UBERON:0000200!6.70e-11!6;UBERON:0000369!1.05e-09!4;UBERON:0002435!1.05e-09!4;UBERON:0000204!1.05e-09!4;UBERON:0010082!1.05e-09!4;UBERON:0002148!1.04e-08!2;UBERON:0009662!1.04e-08!2;UBERON:0000064!2.66e-08!219;UBERON:0002021!2.85e-08!5;UBERON:0004111!1.07e-07!241;UBERON:0000483!5.65e-07!309;UBERON:0000119!7.74e-07!312 | |ontology_enrichment_uberon=UBERON:0005743!9.70e-51!86;UBERON:0001049!1.01e-50!57;UBERON:0005068!1.01e-50!57;UBERON:0006241!1.01e-50!57;UBERON:0007135!1.01e-50!57;UBERON:0001017!2.14e-50!82;UBERON:0002346!1.15e-45!90;UBERON:0002616!2.63e-45!59;UBERON:0000073!3.00e-45!94;UBERON:0001016!3.00e-45!94;UBERON:0000955!2.45e-40!69;UBERON:0006238!2.45e-40!69;UBERON:0003075!4.55e-39!86;UBERON:0007284!4.55e-39!86;UBERON:0001893!8.56e-37!34;UBERON:0002020!1.31e-36!34;UBERON:0003528!1.31e-36!34;UBERON:0002791!7.16e-34!33;UBERON:0002780!2.97e-33!41;UBERON:0001890!2.97e-33!41;UBERON:0006240!2.97e-33!41;UBERON:0003080!2.31e-32!42;UBERON:0001869!2.74e-31!32;UBERON:0000924!1.48e-29!173;UBERON:0006601!1.48e-29!173;UBERON:0003056!1.07e-25!61;UBERON:0001950!2.50e-25!20;UBERON:0004121!4.57e-25!169;UBERON:0000033!3.34e-23!123;UBERON:0002619!6.80e-23!22;UBERON:0000153!8.46e-22!129;UBERON:0007811!8.46e-22!129;UBERON:0002308!2.15e-20!9;UBERON:0000125!2.15e-20!9;UBERON:0007023!3.52e-20!115;UBERON:0000956!6.05e-20!25;UBERON:0000203!6.05e-20!25;UBERON:0004733!7.29e-20!12;UBERON:0002028!7.29e-20!12;UBERON:0007277!7.29e-20!12;UBERON:0003076!1.16e-19!15;UBERON:0003057!1.16e-19!15;UBERON:0004732!3.09e-18!13;UBERON:0002298!4.37e-17!8;UBERON:0002420!4.81e-15!9;UBERON:0007245!4.81e-15!9;UBERON:0010009!4.81e-15!9;UBERON:0010011!4.81e-15!9;UBERON:0000454!4.81e-15!9;UBERON:0002680!5.19e-15!9;UBERON:0001895!5.19e-15!9;UBERON:0010092!5.19e-15!9;UBERON:0009663!7.31e-14!7;UBERON:0001871!2.90e-12!7;UBERON:0006331!4.19e-12!3;UBERON:0000988!5.71e-12!3;UBERON:0000025!3.58e-11!194;UBERON:0000200!6.70e-11!6;UBERON:0000369!1.05e-09!4;UBERON:0002435!1.05e-09!4;UBERON:0000204!1.05e-09!4;UBERON:0010082!1.05e-09!4;UBERON:0002148!1.04e-08!2;UBERON:0009662!1.04e-08!2;UBERON:0000064!2.66e-08!219;UBERON:0002021!2.85e-08!5;UBERON:0004111!1.07e-07!241;UBERON:0000483!5.65e-07!309;UBERON:0000119!7.74e-07!312 | ||
|ontology_enrichment_uberon_v019=UBERON:0002346;5.98e-34;4!UBERON:0000923;5.98e-34;4!UBERON:0010316;5.98e-34;4!UBERON:0005291;5.98e-34;4!UBERON:0002050;2.08e-27;5!UBERON:0005423;2.08e-27;5!UBERON:0002114;2.59e-12;2!UBERON:0002108;6.55e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002114,2.31e-12,2;UBERON:0002108,6.13e-08,4 | |||
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| ||
|short_description=p3@SOX1 | |short_description=p3@SOX1 | ||
}} | }} |
Latest revision as of 14:29, 16 September 2015
Short description: | p3@SOX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SOX1_5end |
Coexpression cluster: | C152_peripheral_neuroectodermal_neuroepithelioma_neuroblastoma_testicular_carcinoid_lung |
Association with transcript: | -377bp_to_ENST00000330949, NM_005986, uc001vsb.1_5end |
EntrezGene: | SOX1 |
HGNC: | 11189 |
UniProt: | O00570 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 6.48e-18 | 2 |
neuronal stem cell | 2.01e-17 | 8 |
neural cell | 9.28e-12 | 25 |
keratinocyte | 5.73e-08 | 5 |
stratified squamous epithelial cell | 7.58e-07 | 6 |
keratin accumulating cell | 7.58e-07 | 6 |
stratified epithelial cell | 7.58e-07 | 6 |
keratinizing barrier epithelial cell | 7.58e-07 | 6 |
epithelial fate stem cell | 7.58e-07 | 6 |
stratified epithelial stem cell | 7.58e-07 | 6 |
surface ectodermal cell | 7.58e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
duodenum | 2.31e-12 | 2 |
small intestine | 6.13e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 3.25e-14 | 10 |
germ cell and embryonal cancer | 5.40e-07 | 22 |
germ cell cancer | 5.40e-07 | 22 |